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PMC:1310620 / 9915-10228 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T2553 0-313 sentence denotes The 1101 base pair sequences obtained from the El Dorado program then were used as the target sequences for putative transcription factor recognition site identification using the MatInspector Version 4.2 program, which yielded sites for 11 transcription factors (Genomatix Software GmbH, Munich, Germany, [17]).
T2554 1-4 DT denotes The
T2555 20-29 NNS denotes sequences
T2556 5-9 CD denotes 1101
T2557 15-19 NN denotes pair
T2558 10-14 NN denotes base
T2559 76-80 VBN denotes used
T2560 30-38 VBN denotes obtained
T2561 39-43 IN denotes from
T2562 44-47 DT denotes the
T2563 58-65 NN denotes program
T2564 48-50 NNP denotes El
T2565 51-57 NNP denotes Dorado
T2566 66-70 RB denotes then
T2567 71-75 VBD denotes were
T2568 81-83 IN denotes as
T2569 84-87 DT denotes the
T2570 95-104 NNS denotes sequences
T2571 88-94 NN denotes target
T2572 105-108 IN denotes for
T2573 109-117 JJ denotes putative
T2574 156-170 NN denotes identification
T2575 118-131 NN denotes transcription
T2576 132-138 NN denotes factor
T2577 151-155 NN denotes site
T2578 139-150 NN denotes recognition
T2579 171-176 VBG denotes using
T2580 177-180 DT denotes the
T2581 206-213 NN denotes program
T2582 181-193 NNP denotes MatInspector
T2583 194-201 NNP denotes Version
T2584 202-205 CD denotes 4.2
T2585 213-215 , denotes ,
T2586 215-220 WDT denotes which
T2587 221-228 VBD denotes yielded
T2588 229-234 NNS denotes sites
T2589 235-238 IN denotes for
T2590 239-241 CD denotes 11
T2591 256-263 NNS denotes factors
T2592 242-255 NN denotes transcription
T2593 264-265 -LRB- denotes (
T2594 284-288 NNP denotes GmbH
T2595 265-274 NNP denotes Genomatix
T2596 275-283 NNP denotes Software
T2597 288-290 , denotes ,
T2598 290-296 NNP denotes Munich
T2599 296-298 , denotes ,
T2600 298-305 NNP denotes Germany
T2601 305-307 , denotes ,
T2602 307-308 -LRB- denotes [
T2603 308-310 CD denotes 17
T2604 310-311 -RRB- denotes ]
T2605 311-312 -RRB- denotes )
T2606 312-313 . denotes .
R1647 T2554 T2555 det The,sequences
R1648 T2555 T2559 nsubjpass sequences,used
R1649 T2556 T2557 nummod 1101,pair
R1650 T2557 T2555 compound pair,sequences
R1651 T2558 T2557 compound base,pair
R1652 T2560 T2555 acl obtained,sequences
R1653 T2561 T2560 prep from,obtained
R1654 T2562 T2563 det the,program
R1656 T2564 T2565 compound El,Dorado
R1657 T2565 T2563 compound Dorado,program
R1658 T2566 T2559 advmod then,used
R1659 T2567 T2559 auxpass were,used
R1660 T2568 T2559 prep as,used
R1661 T2569 T2570 det the,sequences
R1662 T2570 T2568 pobj sequences,as
R1663 T2571 T2570 compound target,sequences
R1664 T2572 T2570 prep for,sequences
R1665 T2573 T2574 amod putative,identification
R1666 T2574 T2572 pobj identification,for
R1667 T2575 T2576 compound transcription,factor
R1668 T2576 T2577 compound factor,site
R1669 T2577 T2574 compound site,identification
R1670 T2578 T2577 compound recognition,site
R1671 T2579 T2559 advcl using,used
R1672 T2580 T2581 det the,program
R1673 T2581 T2579 dobj program,using
R1674 T2582 T2581 nmod MatInspector,program
R1675 T2583 T2581 nmod Version,program
R1676 T2584 T2583 nummod 4.2,Version
R1677 T2585 T2581 punct ", ",program
R1678 T2586 T2587 dep which,yielded
R1679 T2587 T2581 relcl yielded,program
R1680 T2588 T2587 dobj sites,yielded
R1681 T2589 T2588 prep for,sites
R1682 T2590 T2591 nummod 11,factors
R1683 T2591 T2589 pobj factors,for
R1684 T2592 T2591 compound transcription,factors
R1685 T2593 T2594 punct (,GmbH
R1687 T2595 T2594 compound Genomatix,GmbH
R1688 T2596 T2594 compound Software,GmbH
R1689 T2597 T2594 punct ", ",GmbH
R1690 T2598 T2594 npadvmod Munich,GmbH
R1691 T2599 T2594 punct ", ",GmbH
R1692 T2600 T2594 npadvmod Germany,GmbH
R1693 T2601 T2594 punct ", ",GmbH
R1694 T2602 T2603 punct [,17
R1695 T2603 T2594 parataxis 17,GmbH
R1696 T2604 T2603 punct ],17
R1697 T2605 T2594 punct ),GmbH
R1698 T2606 T2559 punct .,used
R1655 T2563 T2561 pobj program,from
R1686 T2594 T2581 parataxis GmbH,program

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2411 10-14 CHEBI_SO_EXT:base denotes base
T2412 10-19 SO_EXT:0000028 denotes base pair
T2413 20-29 SO_EXT:biological_sequence denotes sequences
T2414 95-104 SO_EXT:biological_sequence denotes sequences
T2415 118-131 GO_EXT:transcription denotes transcription
T2416 118-138 GO_EXT:transcription_factor denotes transcription factor
T2417 118-155 SO_EXT:0000235 denotes transcription factor recognition site
T2418 229-238 _FRAGMENT denotes sites for
T2419 242-263 SO_EXT:0000235 denotes transcription factors
T2420 242-255 GO_EXT:transcription denotes transcription
T2421 242-263 GO_EXT:transcription_factor denotes transcription factors
R1577 T2419 T2418 _lexicallyChainedTo transcription factors,sites for

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2458 10-19 SO:0000028 denotes base pair
T2459 118-155 SO:0000235 denotes transcription factor recognition site
T2460 229-238 _FRAGMENT denotes sites for
T2461 242-263 SO:0000235 denotes transcription factors
R1578 T2461 T2460 _lexicallyChainedTo transcription factors,sites for