PMC:1310620 / 4132-4919 JSONTXT

Annnotations TAB JSON ListView MergeView

    craft-sa-dev

    {"project":"craft-sa-dev","denotations":[{"id":"T1244","span":{"begin":0,"end":11},"obj":"NN"},{"id":"T1245","span":{"begin":12,"end":14},"obj":"VBZ"},{"id":"T1246","span":{"begin":15,"end":18},"obj":"CD"},{"id":"T1247","span":{"begin":27,"end":41},"obj":"NN"},{"id":"T1248","span":{"begin":19,"end":26},"obj":"JJ"},{"id":"T1249","span":{"begin":42,"end":44},"obj":"IN"},{"id":"T1250","span":{"begin":45,"end":57},"obj":"VBN"},{"id":"T1251","span":{"begin":58,"end":63},"obj":"NNS"},{"id":"T1252","span":{"begin":63,"end":64},"obj":"."},{"id":"T1253","span":{"begin":64,"end":168},"obj":"sentence"},{"id":"T1254","span":{"begin":65,"end":72},"obj":"DT"},{"id":"T1255","span":{"begin":73,"end":75},"obj":"VBZ"},{"id":"T1256","span":{"begin":76,"end":82},"obj":"VBN"},{"id":"T1257","span":{"begin":116,"end":121},"obj":"NNS"},{"id":"T1258","span":{"begin":83,"end":96},"obj":"NN"},{"id":"T1259","span":{"begin":97,"end":103},"obj":"NN"},{"id":"T1260","span":{"begin":104,"end":115},"obj":"NN"},{"id":"T1261","span":{"begin":122,"end":124},"obj":"IN"},{"id":"T1262","span":{"begin":125,"end":128},"obj":"DT"},{"id":"T1263","span":{"begin":140,"end":147},"obj":"NNS"},{"id":"T1264","span":{"begin":129,"end":139},"obj":"JJ"},{"id":"T1265","span":{"begin":148,"end":150},"obj":"IN"},{"id":"T1266","span":{"begin":151,"end":156},"obj":"DT"},{"id":"T1267","span":{"begin":157,"end":162},"obj":"NNS"},{"id":"T1268","span":{"begin":163,"end":164},"obj":"-LRB-"},{"id":"T1269","span":{"begin":164,"end":166},"obj":"CD"},{"id":"T1270","span":{"begin":166,"end":167},"obj":"-RRB-"},{"id":"T1271","span":{"begin":167,"end":168},"obj":"."},{"id":"T1272","span":{"begin":168,"end":474},"obj":"sentence"},{"id":"T1273","span":{"begin":169,"end":174},"obj":"VBN"},{"id":"T1274","span":{"begin":205,"end":217},"obj":"VBN"},{"id":"T1275","span":{"begin":175,"end":177},"obj":"IN"},{"id":"T1276","span":{"begin":178,"end":181},"obj":"DT"},{"id":"T1277","span":{"begin":188,"end":196},"obj":"NNS"},{"id":"T1278","span":{"begin":182,"end":187},"obj":"JJ"},{"id":"T1279","span":{"begin":196,"end":198},"obj":","},{"id":"T1280","span":{"begin":198,"end":200},"obj":"PRP"},{"id":"T1281","span":{"begin":201,"end":204},"obj":"VBD"},{"id":"T1282","span":{"begin":218,"end":223},"obj":"RB"},{"id":"T1283","span":{"begin":236,"end":238},"obj":"VBZ"},{"id":"T1284","span":{"begin":223,"end":225},"obj":","},{"id":"T1285","span":{"begin":225,"end":229},"obj":"IN"},{"id":"T1286","span":{"begin":230,"end":235},"obj":"EX"},{"id":"T1287","span":{"begin":239,"end":255},"obj":"JJ"},{"id":"T1288","span":{"begin":256,"end":265},"obj":"NN"},{"id":"T1289","span":{"begin":266,"end":268},"obj":"IN"},{"id":"T1290","span":{"begin":269,"end":279},"obj":"NN"},{"id":"T1291","span":{"begin":280,"end":282},"obj":"IN"},{"id":"T1292","span":{"begin":283,"end":286},"obj":"JJ"},{"id":"T1293","span":{"begin":314,"end":319},"obj":"NNS"},{"id":"T1294","span":{"begin":287,"end":298},"obj":"NN"},{"id":"T1295","span":{"begin":299,"end":302},"obj":"CC"},{"id":"T1296","span":{"begin":303,"end":306},"obj":"NN"},{"id":"T1297","span":{"begin":307,"end":313},"obj":"NN"},{"id":"T1298","span":{"begin":320,"end":322},"obj":"IN"},{"id":"T1299","span":{"begin":323,"end":326},"obj":"CD"},{"id":"T1300","span":{"begin":349,"end":356},"obj":"NNS"},{"id":"T1301","span":{"begin":327,"end":329},"obj":"CC"},{"id":"T1302","span":{"begin":330,"end":334},"obj":"JJR"},{"id":"T1303","span":{"begin":335,"end":348},"obj":"NN"},{"id":"T1304","span":{"begin":357,"end":360},"obj":"CC"},{"id":"T1305","span":{"begin":361,"end":367},"obj":"RB"},{"id":"T1306","span":{"begin":418,"end":426},"obj":"VBN"},{"id":"T1307","span":{"begin":367,"end":369},"obj":","},{"id":"T1308","span":{"begin":369,"end":373},"obj":"IN"},{"id":"T1309","span":{"begin":374,"end":385},"obj":"NNS"},{"id":"T1310","span":{"begin":386,"end":390},"obj":"IN"},{"id":"T1311","span":{"begin":391,"end":402},"obj":"JJ"},{"id":"T1312","span":{"begin":403,"end":413},"obj":"NN"},{"id":"T1313","span":{"begin":414,"end":417},"obj":"VBP"},{"id":"T1314","span":{"begin":427,"end":430},"obj":"IN"},{"id":"T1315","span":{"begin":431,"end":442},"obj":"NN"},{"id":"T1316","span":{"begin":443,"end":445},"obj":"IN"},{"id":"T1317","span":{"begin":446,"end":448},"obj":"NN"},{"id":"T1318","span":{"begin":449,"end":451},"obj":"IN"},{"id":"T1319","span":{"begin":457,"end":462},"obj":"VBP"},{"id":"T1320","span":{"begin":452,"end":456},"obj":"PRP"},{"id":"T1321","span":{"begin":463,"end":473},"obj":"NNS"},{"id":"T1322","span":{"begin":473,"end":474},"obj":"."},{"id":"T1323","span":{"begin":474,"end":787},"obj":"sentence"},{"id":"T1324","span":{"begin":475,"end":477},"obj":"TO"},{"id":"T1325","span":{"begin":478,"end":482},"obj":"VB"},{"id":"T1326","span":{"begin":613,"end":623},"obj":"VBN"},{"id":"T1327","span":{"begin":483,"end":488},"obj":"DT"},{"id":"T1328","span":{"begin":489,"end":499},"obj":"NNS"},{"id":"T1329","span":{"begin":499,"end":501},"obj":","},{"id":"T1330","span":{"begin":501,"end":514},"obj":"NN"},{"id":"T1331","span":{"begin":515,"end":521},"obj":"NN"},{"id":"T1332","span":{"begin":534,"end":539},"obj":"NNS"},{"id":"T1333","span":{"begin":522,"end":533},"obj":"NN"},{"id":"T1334","span":{"begin":540,"end":546},"obj":"JJ"},{"id":"T1335","span":{"begin":547,"end":549},"obj":"IN"},{"id":"T1336","span":{"begin":550,"end":553},"obj":"DT"},{"id":"T1337","span":{"begin":565,"end":572},"obj":"NNS"},{"id":"T1338","span":{"begin":554,"end":564},"obj":"JJ"},{"id":"T1339","span":{"begin":573,"end":575},"obj":"IN"},{"id":"T1340","span":{"begin":576,"end":579},"obj":"DT"},{"id":"T1341","span":{"begin":602,"end":607},"obj":"NNS"},{"id":"T1342","span":{"begin":580,"end":585},"obj":"JJ"},{"id":"T1343","span":{"begin":586,"end":596},"obj":"VBN"},{"id":"T1344","span":{"begin":597,"end":601},"obj":"NN"},{"id":"T1345","span":{"begin":608,"end":612},"obj":"VBD"},{"id":"T1346","span":{"begin":624,"end":631},"obj":"IN"},{"id":"T1347","span":{"begin":632,"end":634},"obj":"FW"},{"id":"T1348","span":{"begin":635,"end":641},"obj":"FW"},{"id":"T1349","span":{"begin":655,"end":663},"obj":"NN"},{"id":"T1350","span":{"begin":642,"end":645},"obj":"NN"},{"id":"T1351","span":{"begin":646,"end":654},"obj":"NN"},{"id":"T1352","span":{"begin":663,"end":665},"obj":","},{"id":"T1353","span":{"begin":665,"end":668},"obj":"CC"},{"id":"T1354","span":{"begin":669,"end":674},"obj":"PRP$"},{"id":"T1355","span":{"begin":686,"end":695},"obj":"NN"},{"id":"T1356","span":{"begin":675,"end":685},"obj":"NN"},{"id":"T1357","span":{"begin":696,"end":704},"obj":"VBN"},{"id":"T1358","span":{"begin":705,"end":719},"obj":"RB"},{"id":"T1359","span":{"begin":720,"end":724},"obj":"IN"},{"id":"T1360","span":{"begin":725,"end":727},"obj":"DT"},{"id":"T1361","span":{"begin":737,"end":742},"obj":"NN"},{"id":"T1362","span":{"begin":728,"end":736},"obj":"VBN"},{"id":"T1363","span":{"begin":743,"end":745},"obj":"IN"},{"id":"T1364","span":{"begin":746,"end":749},"obj":"CD"},{"id":"T1365","span":{"begin":750,"end":761},"obj":"NN"},{"id":"T1366","span":{"begin":781,"end":786},"obj":"NNS"},{"id":"T1367","span":{"begin":762,"end":765},"obj":"CC"},{"id":"T1368","span":{"begin":766,"end":769},"obj":"CD"},{"id":"T1369","span":{"begin":774,"end":780},"obj":"NN"},{"id":"T1370","span":{"begin":770,"end":773},"obj":"NN"},{"id":"T1371","span":{"begin":786,"end":787},"obj":"."}],"relations":[{"id":"R697","pred":"attr","subj":"T1247","obj":"T1245"},{"id":"R698","pred":"amod","subj":"T1248","obj":"T1247"},{"id":"R705","pred":"attr","subj":"T1257","obj":"T1255"},{"id":"R706","pred":"compound","subj":"T1258","obj":"T1259"},{"id":"R707","pred":"compound","subj":"T1259","obj":"T1260"},{"id":"R708","pred":"compound","subj":"T1260","obj":"T1257"},{"id":"R711","pred":"pobj","subj":"T1263","obj":"T1261"},{"id":"R712","pred":"amod","subj":"T1264","obj":"T1263"},{"id":"R723","pred":"pobj","subj":"T1277","obj":"T1275"},{"id":"R724","pred":"amod","subj":"T1278","obj":"T1277"},{"id":"R729","pred":"advcl","subj":"T1283","obj":"T1274"},{"id":"R730","pred":"punct","subj":"T1284","obj":"T1283"},{"id":"R731","pred":"mark","subj":"T1285","obj":"T1283"},{"id":"R732","pred":"expl","subj":"T1286","obj":"T1283"},{"id":"R739","pred":"pobj","subj":"T1293","obj":"T1291"},{"id":"R740","pred":"nmod","subj":"T1294","obj":"T1293"},{"id":"R741","pred":"cc","subj":"T1295","obj":"T1294"},{"id":"R742","pred":"compound","subj":"T1296","obj":"T1297"},{"id":"R743","pred":"conj","subj":"T1297","obj":"T1294"},{"id":"R746","pred":"pobj","subj":"T1300","obj":"T1298"},{"id":"R747","pred":"cc","subj":"T1301","obj":"T1299"},{"id":"R748","pred":"conj","subj":"T1302","obj":"T1299"},{"id":"R749","pred":"compound","subj":"T1303","obj":"T1300"},{"id":"R752","pred":"conj","subj":"T1306","obj":"T1283"},{"id":"R753","pred":"punct","subj":"T1307","obj":"T1306"},{"id":"R754","pred":"mark","subj":"T1308","obj":"T1306"},{"id":"R755","pred":"nsubjpass","subj":"T1309","obj":"T1306"},{"id":"R756","pred":"prep","subj":"T1310","obj":"T1309"},{"id":"R757","pred":"amod","subj":"T1311","obj":"T1312"},{"id":"R758","pred":"pobj","subj":"T1312","obj":"T1310"},{"id":"R759","pred":"auxpass","subj":"T1313","obj":"T1306"},{"id":"R765","pred":"advcl","subj":"T1319","obj":"T1306"},{"id":"R766","pred":"nsubj","subj":"T1320","obj":"T1319"},{"id":"R776","pred":"nsubjpass","subj":"T1332","obj":"T1326"},{"id":"R777","pred":"compound","subj":"T1333","obj":"T1332"},{"id":"R781","pred":"pobj","subj":"T1337","obj":"T1335"},{"id":"R782","pred":"amod","subj":"T1338","obj":"T1337"},{"id":"R785","pred":"pobj","subj":"T1341","obj":"T1339"},{"id":"R786","pred":"amod","subj":"T1342","obj":"T1343"},{"id":"R787","pred":"amod","subj":"T1343","obj":"T1341"},{"id":"R788","pred":"compound","subj":"T1344","obj":"T1341"},{"id":"R793","pred":"pobj","subj":"T1349","obj":"T1346"},{"id":"R794","pred":"compound","subj":"T1350","obj":"T1351"},{"id":"R795","pred":"compound","subj":"T1351","obj":"T1349"},{"id":"R799","pred":"nsubj","subj":"T1355","obj":"T1357"},{"id":"R800","pred":"compound","subj":"T1356","obj":"T1355"},{"id":"R805","pred":"pobj","subj":"T1361","obj":"T1359"},{"id":"R806","pred":"amod","subj":"T1362","obj":"T1361"},{"id":"R810","pred":"pobj","subj":"T1366","obj":"T1363"},{"id":"R811","pred":"cc","subj":"T1367","obj":"T1365"},{"id":"R812","pred":"nummod","subj":"T1368","obj":"T1369"},{"id":"R814","pred":"compound","subj":"T1370","obj":"T1369"},{"id":"R695","pred":"nsubj","subj":"T1244","obj":"T1245"},{"id":"R696","pred":"nummod","subj":"T1246","obj":"T1247"},{"id":"R699","pred":"prep","subj":"T1249","obj":"T1247"},{"id":"R700","pred":"amod","subj":"T1250","obj":"T1251"},{"id":"R701","pred":"pobj","subj":"T1251","obj":"T1249"},{"id":"R702","pred":"punct","subj":"T1252","obj":"T1245"},{"id":"R703","pred":"nsubj","subj":"T1254","obj":"T1255"},{"id":"R704","pred":"amod","subj":"T1256","obj":"T1257"},{"id":"R709","pred":"prep","subj":"T1261","obj":"T1255"},{"id":"R710","pred":"det","subj":"T1262","obj":"T1263"},{"id":"R713","pred":"prep","subj":"T1265","obj":"T1263"},{"id":"R714","pred":"det","subj":"T1266","obj":"T1267"},{"id":"R715","pred":"pobj","subj":"T1267","obj":"T1265"},{"id":"R716","pred":"punct","subj":"T1268","obj":"T1269"},{"id":"R717","pred":"parataxis","subj":"T1269","obj":"T1255"},{"id":"R718","pred":"punct","subj":"T1270","obj":"T1269"},{"id":"R719","pred":"punct","subj":"T1271","obj":"T1255"},{"id":"R720","pred":"prep","subj":"T1273","obj":"T1274"},{"id":"R721","pred":"prep","subj":"T1275","obj":"T1273"},{"id":"R722","pred":"det","subj":"T1276","obj":"T1277"},{"id":"R725","pred":"punct","subj":"T1279","obj":"T1274"},{"id":"R726","pred":"nsubjpass","subj":"T1280","obj":"T1274"},{"id":"R727","pred":"auxpass","subj":"T1281","obj":"T1274"},{"id":"R728","pred":"advmod","subj":"T1282","obj":"T1283"},{"id":"R733","pred":"amod","subj":"T1287","obj":"T1288"},{"id":"R734","pred":"attr","subj":"T1288","obj":"T1283"},{"id":"R735","pred":"prep","subj":"T1289","obj":"T1283"},{"id":"R736","pred":"pobj","subj":"T1290","obj":"T1289"},{"id":"R737","pred":"prep","subj":"T1291","obj":"T1290"},{"id":"R738","pred":"amod","subj":"T1292","obj":"T1293"},{"id":"R744","pred":"prep","subj":"T1298","obj":"T1290"},{"id":"R745","pred":"nummod","subj":"T1299","obj":"T1300"},{"id":"R750","pred":"cc","subj":"T1304","obj":"T1283"},{"id":"R751","pred":"advmod","subj":"T1305","obj":"T1306"},{"id":"R760","pred":"prep","subj":"T1314","obj":"T1306"},{"id":"R761","pred":"pobj","subj":"T1315","obj":"T1314"},{"id":"R762","pred":"prep","subj":"T1316","obj":"T1315"},{"id":"R763","pred":"pobj","subj":"T1317","obj":"T1316"},{"id":"R764","pred":"mark","subj":"T1318","obj":"T1319"},{"id":"R767","pred":"dobj","subj":"T1321","obj":"T1319"},{"id":"R768","pred":"punct","subj":"T1322","obj":"T1274"},{"id":"R769","pred":"aux","subj":"T1324","obj":"T1325"},{"id":"R770","pred":"advcl","subj":"T1325","obj":"T1326"},{"id":"R771","pred":"det","subj":"T1327","obj":"T1328"},{"id":"R772","pred":"dobj","subj":"T1328","obj":"T1325"},{"id":"R773","pred":"punct","subj":"T1329","obj":"T1326"},{"id":"R774","pred":"compound","subj":"T1330","obj":"T1331"},{"id":"R775","pred":"compound","subj":"T1331","obj":"T1332"},{"id":"R778","pred":"amod","subj":"T1334","obj":"T1332"},{"id":"R779","pred":"prep","subj":"T1335","obj":"T1334"},{"id":"R780","pred":"det","subj":"T1336","obj":"T1337"},{"id":"R783","pred":"prep","subj":"T1339","obj":"T1337"},{"id":"R784","pred":"det","subj":"T1340","obj":"T1341"},{"id":"R789","pred":"auxpass","subj":"T1345","obj":"T1326"},{"id":"R790","pred":"prep","subj":"T1346","obj":"T1326"},{"id":"R791","pred":"advmod","subj":"T1347","obj":"T1348"},{"id":"R792","pred":"amod","subj":"T1348","obj":"T1349"},{"id":"R796","pred":"punct","subj":"T1352","obj":"T1326"},{"id":"R797","pred":"cc","subj":"T1353","obj":"T1326"},{"id":"R798","pred":"poss","subj":"T1354","obj":"T1355"},{"id":"R801","pred":"conj","subj":"T1357","obj":"T1326"},{"id":"R802","pred":"advmod","subj":"T1358","obj":"T1357"},{"id":"R803","pred":"prep","subj":"T1359","obj":"T1358"},{"id":"R804","pred":"det","subj":"T1360","obj":"T1361"},{"id":"R807","pred":"prep","subj":"T1363","obj":"T1361"},{"id":"R808","pred":"nummod","subj":"T1364","obj":"T1365"},{"id":"R809","pred":"nmod","subj":"T1365","obj":"T1366"},{"id":"R813","pred":"conj","subj":"T1369","obj":"T1365"},{"id":"R815","pred":"punct","subj":"T1371","obj":"T1326"}],"text":"Correlation is one typical characteristic of co-regulated genes. Another is shared transcription factor recognition sites in the regulatory regions of those genes [10]. Based on the above findings, it was hypothesized first, that there is inter-individual variation in regulation of key antioxidant and DNA repair genes by one or more transcription factors and second, that individuals with sub-optimal regulation are selected for development of BC if they smoke cigarettes. To test these hypotheses, transcription factor recognition sites common to the regulatory regions of the above correlated gene pairs were identified through in silico DNA sequence analysis, and their transcript abundance measured simultaneously with an expanded group of ten antioxidant and six DNA repair genes."}

    2_test

    {"project":"2_test","denotations":[{"id":"16255782-10891549-8759916","span":{"begin":164,"end":166},"obj":"10891549"}],"text":"Correlation is one typical characteristic of co-regulated genes. Another is shared transcription factor recognition sites in the regulatory regions of those genes [10]. Based on the above findings, it was hypothesized first, that there is inter-individual variation in regulation of key antioxidant and DNA repair genes by one or more transcription factors and second, that individuals with sub-optimal regulation are selected for development of BC if they smoke cigarettes. To test these hypotheses, transcription factor recognition sites common to the regulatory regions of the above correlated gene pairs were identified through in silico DNA sequence analysis, and their transcript abundance measured simultaneously with an expanded group of ten antioxidant and six DNA repair genes."}

    craft-ca-core-ex-dev

    {"project":"craft-ca-core-ex-dev","denotations":[{"id":"T836","span":{"begin":48,"end":57},"obj":"GO:0065007"},{"id":"T837","span":{"begin":58,"end":63},"obj":"SO_EXT:0000704"},{"id":"T838","span":{"begin":83,"end":96},"obj":"GO_EXT:transcription"},{"id":"T839","span":{"begin":83,"end":103},"obj":"GO_EXT:transcription_factor"},{"id":"T840","span":{"begin":83,"end":121},"obj":"SO_EXT:0000235"},{"id":"T841","span":{"begin":129,"end":139},"obj":"GO:0065007"},{"id":"T842","span":{"begin":129,"end":147},"obj":"SO_EXT:0005836"},{"id":"T843","span":{"begin":157,"end":162},"obj":"SO_EXT:0000704"},{"id":"T844","span":{"begin":245,"end":255},"obj":"NCBITaxon:1"},{"id":"T845","span":{"begin":269,"end":279},"obj":"GO:0065007"},{"id":"T846","span":{"begin":287,"end":298},"obj":"CHEBI_GO_EXT:antioxidant"},{"id":"T847","span":{"begin":291,"end":298},"obj":"CHEBI_MOP_EXT:oxidising_agent_or_oxidation"},{"id":"T848","span":{"begin":303,"end":306},"obj":"CHEBI_SO_EXT:DNA"},{"id":"T849","span":{"begin":303,"end":313},"obj":"GO:0006281"},{"id":"T850","span":{"begin":314,"end":319},"obj":"SO_EXT:0000704"},{"id":"T851","span":{"begin":335,"end":348},"obj":"GO_EXT:transcription"},{"id":"T852","span":{"begin":335,"end":356},"obj":"GO_EXT:transcription_factor"},{"id":"T853","span":{"begin":374,"end":385},"obj":"NCBITaxon:1"},{"id":"T854","span":{"begin":403,"end":413},"obj":"GO:0065007"},{"id":"T855","span":{"begin":501,"end":514},"obj":"GO_EXT:transcription"},{"id":"T856","span":{"begin":501,"end":521},"obj":"GO_EXT:transcription_factor"},{"id":"T857","span":{"begin":501,"end":539},"obj":"SO_EXT:0000235"},{"id":"T858","span":{"begin":554,"end":564},"obj":"GO:0065007"},{"id":"T859","span":{"begin":554,"end":572},"obj":"SO_EXT:0005836"},{"id":"T860","span":{"begin":597,"end":601},"obj":"SO_EXT:0000704"},{"id":"T861","span":{"begin":642,"end":645},"obj":"CHEBI_SO_EXT:DNA"},{"id":"T862","span":{"begin":646,"end":654},"obj":"SO_EXT:biological_sequence"},{"id":"T863","span":{"begin":675,"end":685},"obj":"SO_EXT:0000673"},{"id":"T864","span":{"begin":750,"end":761},"obj":"CHEBI_GO_EXT:antioxidant"},{"id":"T865","span":{"begin":754,"end":761},"obj":"CHEBI_MOP_EXT:oxidising_agent_or_oxidation"},{"id":"T866","span":{"begin":770,"end":773},"obj":"CHEBI_SO_EXT:DNA"},{"id":"T867","span":{"begin":770,"end":780},"obj":"GO:0006281"},{"id":"T868","span":{"begin":781,"end":786},"obj":"SO_EXT:0000704"}],"text":"Correlation is one typical characteristic of co-regulated genes. Another is shared transcription factor recognition sites in the regulatory regions of those genes [10]. Based on the above findings, it was hypothesized first, that there is inter-individual variation in regulation of key antioxidant and DNA repair genes by one or more transcription factors and second, that individuals with sub-optimal regulation are selected for development of BC if they smoke cigarettes. To test these hypotheses, transcription factor recognition sites common to the regulatory regions of the above correlated gene pairs were identified through in silico DNA sequence analysis, and their transcript abundance measured simultaneously with an expanded group of ten antioxidant and six DNA repair genes."}

    craft-ca-core-dev

    {"project":"craft-ca-core-dev","denotations":[{"id":"T904","span":{"begin":48,"end":57},"obj":"GO:0065007"},{"id":"T905","span":{"begin":58,"end":63},"obj":"SO:0000704"},{"id":"T906","span":{"begin":83,"end":121},"obj":"SO:0000235"},{"id":"T907","span":{"begin":129,"end":139},"obj":"GO:0065007"},{"id":"T908","span":{"begin":129,"end":147},"obj":"SO:0005836"},{"id":"T909","span":{"begin":157,"end":162},"obj":"SO:0000704"},{"id":"T910","span":{"begin":245,"end":255},"obj":"NCBITaxon:1"},{"id":"T911","span":{"begin":269,"end":279},"obj":"GO:0065007"},{"id":"T912","span":{"begin":303,"end":313},"obj":"GO:0006281"},{"id":"T913","span":{"begin":314,"end":319},"obj":"SO:0000704"},{"id":"T914","span":{"begin":374,"end":385},"obj":"NCBITaxon:1"},{"id":"T915","span":{"begin":403,"end":413},"obj":"GO:0065007"},{"id":"T916","span":{"begin":501,"end":539},"obj":"SO:0000235"},{"id":"T917","span":{"begin":554,"end":564},"obj":"GO:0065007"},{"id":"T918","span":{"begin":554,"end":572},"obj":"SO:0005836"},{"id":"T919","span":{"begin":597,"end":601},"obj":"SO:0000704"},{"id":"T920","span":{"begin":675,"end":685},"obj":"SO:0000673"},{"id":"T921","span":{"begin":770,"end":780},"obj":"GO:0006281"},{"id":"T922","span":{"begin":781,"end":786},"obj":"SO:0000704"}],"text":"Correlation is one typical characteristic of co-regulated genes. Another is shared transcription factor recognition sites in the regulatory regions of those genes [10]. Based on the above findings, it was hypothesized first, that there is inter-individual variation in regulation of key antioxidant and DNA repair genes by one or more transcription factors and second, that individuals with sub-optimal regulation are selected for development of BC if they smoke cigarettes. To test these hypotheses, transcription factor recognition sites common to the regulatory regions of the above correlated gene pairs were identified through in silico DNA sequence analysis, and their transcript abundance measured simultaneously with an expanded group of ten antioxidant and six DNA repair genes."}