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PMC:1310620 / 3603-4131 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1148 0-2 PRP denotes We
T1149 14-22 VBD denotes reported
T1150 3-13 RB denotes previously
T1151 23-27 IN denotes that
T1152 99-102 VBD denotes was
T1153 28-30 DT denotes an
T1154 64-69 NN denotes index
T1155 31-42 JJ denotes interactive
T1156 43-53 NN denotes transcript
T1157 54-63 NN denotes abundance
T1158 70-80 VBG denotes comprising
T1159 81-92 NN denotes antioxidant
T1160 93-98 NNS denotes genes
T1161 103-108 JJR denotes lower
T1162 109-111 IN denotes in
T1163 112-116 NN denotes NBEC
T1164 117-119 IN denotes of
T1165 120-122 NN denotes BC
T1166 123-134 NNS denotes individuals
T1167 135-143 VBN denotes compared
T1168 144-146 IN denotes to
T1169 147-153 JJ denotes non-BC
T1170 154-165 NNS denotes individuals
T1171 165-167 , denotes ,
T1172 167-177 VBG denotes suggesting
T1173 178-182 IN denotes that
T1174 202-210 VBN denotes selected
T1175 183-185 NN denotes BC
T1176 186-197 NNS denotes individuals
T1177 198-201 VBP denotes are
T1178 211-213 IN denotes on
T1179 214-217 DT denotes the
T1180 218-223 NN denotes basis
T1181 224-226 IN denotes of
T1182 227-231 JJ denotes poor
T1183 244-254 NN denotes protection
T1184 232-243 NN denotes antioxidant
T1185 255-256 -LRB- denotes [
T1186 256-257 CD denotes 9
T1187 257-258 -RRB- denotes ]
T1188 258-259 . denotes .
T1189 259-446 sentence denotes In that study, there was a tendency towards correlation in transcript abundance between several pairs of antioxidant or DNA repair genes in non-BC individuals, but not in BC individuals.
T1190 260-262 IN denotes In
T1191 281-284 VBD denotes was
T1192 263-267 DT denotes that
T1193 268-273 NN denotes study
T1194 273-275 , denotes ,
T1195 275-280 EX denotes there
T1196 285-286 DT denotes a
T1197 287-295 NN denotes tendency
T1198 296-303 IN denotes towards
T1199 304-315 NN denotes correlation
T1200 316-318 IN denotes in
T1201 319-329 NN denotes transcript
T1202 330-339 NN denotes abundance
T1203 340-347 IN denotes between
T1204 348-355 JJ denotes several
T1205 356-361 NNS denotes pairs
T1206 362-364 IN denotes of
T1207 365-376 NN denotes antioxidant
T1208 391-396 NNS denotes genes
T1209 377-379 CC denotes or
T1210 380-383 NN denotes DNA
T1211 384-390 NN denotes repair
T1212 397-399 IN denotes in
T1213 400-406 JJ denotes non-BC
T1214 407-418 NNS denotes individuals
T1215 418-420 , denotes ,
T1216 420-423 CC denotes but
T1217 424-427 RB denotes not
T1218 428-430 IN denotes in
T1219 431-433 NN denotes BC
T1220 434-445 NNS denotes individuals
T1221 445-446 . denotes .
T1222 446-528 sentence denotes Gene pairs included in that observation were GSTP1/GPX1, CAT/GPX3, and GPX3/SOD1.
T1223 447-451 NN denotes Gene
T1224 452-457 NNS denotes pairs
T1225 487-491 VBD denotes were
T1226 458-466 VBN denotes included
T1227 467-469 IN denotes in
T1228 470-474 DT denotes that
T1229 475-486 NN denotes observation
T1230 492-497 NN denotes GSTP1
T1231 498-502 NN denotes GPX1
T1232 497-498 HYPH denotes /
T1233 502-504 , denotes ,
T1234 504-507 NN denotes CAT
T1235 508-512 NN denotes GPX3
T1236 507-508 HYPH denotes /
T1237 512-514 , denotes ,
T1238 514-517 CC denotes and
T1239 518-522 NN denotes GPX3
T1240 523-527 NN denotes SOD1
T1241 522-523 HYPH denotes /
T1242 527-528 . denotes .
R608 T1152 T1149 ccomp was,reported
R609 T1153 T1154 det an,index
R610 T1154 T1152 nsubj index,was
R611 T1155 T1154 amod interactive,index
R612 T1156 T1157 compound transcript,abundance
R613 T1157 T1154 compound abundance,index
R614 T1158 T1154 acl comprising,index
R615 T1159 T1160 compound antioxidant,genes
R616 T1160 T1158 dobj genes,comprising
R630 T1174 T1172 ccomp selected,suggesting
R631 T1175 T1176 compound BC,individuals
R632 T1176 T1174 nsubjpass individuals,selected
R633 T1177 T1174 auxpass are,selected
R639 T1183 T1181 pobj protection,of
R640 T1184 T1183 compound antioxidant,protection
R662 T1208 T1206 pobj genes,of
R663 T1209 T1207 cc or,antioxidant
R664 T1210 T1211 compound DNA,repair
R665 T1211 T1207 conj repair,antioxidant
R683 T1231 T1225 attr GPX1,were
R684 T1232 T1231 punct /,GPX1
R687 T1235 T1231 conj GPX3,GPX1
R688 T1236 T1235 punct /,GPX3
R692 T1240 T1235 conj SOD1,GPX3
R693 T1241 T1240 punct /,SOD1
R605 T1148 T1149 nsubj We,reported
R606 T1150 T1149 advmod previously,reported
R607 T1151 T1152 mark that,was
R617 T1161 T1152 acomp lower,was
R618 T1162 T1152 prep in,was
R619 T1163 T1162 pobj NBEC,in
R620 T1164 T1163 prep of,NBEC
R621 T1165 T1166 compound BC,individuals
R622 T1166 T1164 pobj individuals,of
R623 T1167 T1152 prep compared,was
R624 T1168 T1167 prep to,compared
R625 T1169 T1170 amod non-BC,individuals
R626 T1170 T1168 pobj individuals,to
R627 T1171 T1149 punct ", ",reported
R628 T1172 T1149 advcl suggesting,reported
R629 T1173 T1174 mark that,selected
R634 T1178 T1174 prep on,selected
R635 T1179 T1180 det the,basis
R636 T1180 T1178 pobj basis,on
R637 T1181 T1180 prep of,basis
R638 T1182 T1183 amod poor,protection
R641 T1185 T1186 punct [,9
R642 T1186 T1149 parataxis 9,reported
R643 T1187 T1186 punct ],9
R644 T1188 T1149 punct .,reported
R645 T1190 T1191 prep In,was
R646 T1192 T1193 det that,study
R647 T1193 T1190 pobj study,In
R648 T1194 T1191 punct ", ",was
R649 T1195 T1191 expl there,was
R650 T1196 T1197 det a,tendency
R651 T1197 T1191 attr tendency,was
R652 T1198 T1197 prep towards,tendency
R653 T1199 T1198 pobj correlation,towards
R654 T1200 T1199 prep in,correlation
R655 T1201 T1202 compound transcript,abundance
R656 T1202 T1200 pobj abundance,in
R657 T1203 T1199 prep between,correlation
R658 T1204 T1205 amod several,pairs
R659 T1205 T1203 pobj pairs,between
R660 T1206 T1205 prep of,pairs
R661 T1207 T1208 nmod antioxidant,genes
R666 T1212 T1191 prep in,was
R667 T1213 T1214 amod non-BC,individuals
R668 T1214 T1212 pobj individuals,in
R669 T1215 T1212 punct ", ",in
R670 T1216 T1212 cc but,in
R671 T1217 T1216 neg not,but
R672 T1218 T1212 conj in,in
R673 T1219 T1220 compound BC,individuals
R674 T1220 T1218 pobj individuals,in
R675 T1221 T1191 punct .,was
R676 T1223 T1224 compound Gene,pairs
R677 T1224 T1225 nsubj pairs,were
R678 T1226 T1224 acl included,pairs
R679 T1227 T1226 prep in,included
R680 T1228 T1229 det that,observation
R681 T1229 T1227 pobj observation,in
R682 T1230 T1231 compound GSTP1,GPX1
R685 T1233 T1231 punct ", ",GPX1
R686 T1234 T1235 compound CAT,GPX3
R689 T1237 T1235 punct ", ",GPX3
R690 T1238 T1235 cc and,GPX3
R691 T1239 T1240 compound GPX3,SOD1
R694 T1242 T1225 punct .,were

2_test

Id Subject Object Predicate Lexical cue
16255782-10749130-8759915 256-257 10749130 denotes 9

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T812 43-53 SO_EXT:0000673 denotes transcript
T813 81-92 CHEBI_GO_EXT:antioxidant denotes antioxidant
T814 85-92 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T815 93-98 SO_EXT:0000704 denotes genes
T816 123-134 NCBITaxon:1 denotes individuals
T817 154-165 NCBITaxon:1 denotes individuals
T818 186-197 NCBITaxon:1 denotes individuals
T819 232-243 CHEBI_GO_EXT:antioxidant denotes antioxidant
T820 236-243 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T821 319-329 SO_EXT:0000673 denotes transcript
T822 365-376 CHEBI_GO_EXT:antioxidant denotes antioxidant
T823 369-376 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T824 380-383 CHEBI_SO_EXT:DNA denotes DNA
T825 380-390 GO:0006281 denotes DNA repair
T826 391-396 SO_EXT:0000704 denotes genes
T827 407-418 NCBITaxon:1 denotes individuals
T828 434-445 NCBITaxon:1 denotes individuals
T829 447-451 SO_EXT:0000704 denotes Gene
T830 492-497 PR_EXT:000029950 denotes GSTP1
T831 498-502 PR_EXT:000008210 denotes GPX1
T832 504-507 GO_PR_EXT:catalase denotes CAT
T833 508-512 PR_EXT:000008212 denotes GPX3
T834 518-522 PR_EXT:000008212 denotes GPX3
T835 523-527 PR_EXT:000015399 denotes SOD1

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T888 43-53 SO:0000673 denotes transcript
T889 93-98 SO:0000704 denotes genes
T890 123-134 NCBITaxon:1 denotes individuals
T891 154-165 NCBITaxon:1 denotes individuals
T892 186-197 NCBITaxon:1 denotes individuals
T893 319-329 SO:0000673 denotes transcript
T894 380-390 GO:0006281 denotes DNA repair
T895 391-396 SO:0000704 denotes genes
T896 407-418 NCBITaxon:1 denotes individuals
T897 434-445 NCBITaxon:1 denotes individuals
T898 447-451 SO:0000704 denotes Gene
T899 492-497 PR:000029950 denotes GSTP1
T900 498-502 PR:000008210 denotes GPX1
T901 508-512 PR:000008212 denotes GPX3
T902 518-522 PR:000008212 denotes GPX3
T903 523-527 PR:000015399 denotes SOD1