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PMC:1310620 / 19541-20455 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T5280 0-13 JJ denotes Epidemiologic
T5281 14-24 NN denotes assessment
T5282 129-133 VBN denotes been
T5283 25-27 IN denotes of
T5284 28-31 DT denotes the
T5285 32-43 NN denotes correlation
T5286 44-51 IN denotes between
T5287 52-53 DT denotes a
T5288 65-74 NN denotes variation
T5289 54-64 JJ denotes particular
T5290 75-77 IN denotes in
T5291 78-81 NN denotes DNA
T5292 82-90 NN denotes sequence
T5293 90-92 , denotes ,
T5294 92-94 CC denotes or
T5295 95-107 NN denotes polymorphism
T5296 107-109 , denotes ,
T5297 109-112 CC denotes and
T5298 113-117 NN denotes risk
T5299 118-121 IN denotes for
T5300 122-124 NN denotes BC
T5301 125-128 VBZ denotes has
T5302 134-135 DT denotes a
T5303 145-153 NN denotes paradigm
T5304 136-144 JJ denotes dominant
T5305 154-157 IN denotes for
T5306 158-162 JJ denotes many
T5307 163-168 NNS denotes years
T5308 168-169 . denotes .
T5309 169-227 sentence denotes Thus far, these efforts have met with scant success [26].
T5310 170-174 RB denotes Thus
T5311 175-178 RB denotes far
T5312 199-202 VBN denotes met
T5313 178-180 , denotes ,
T5314 180-185 DT denotes these
T5315 186-193 NNS denotes efforts
T5316 194-198 VBP denotes have
T5317 203-207 IN denotes with
T5318 208-213 JJ denotes scant
T5319 214-221 NN denotes success
T5320 222-223 -LRB- denotes [
T5321 223-225 CD denotes 26
T5322 225-226 -RRB- denotes ]
T5323 226-227 . denotes .
T5324 227-368 sentence denotes A common limitation in design of such studies is that they involve assessment of a single polymorphism or occasionally, a few polymorphisms.
T5325 228-229 DT denotes A
T5326 237-247 NN denotes limitation
T5327 230-236 JJ denotes common
T5328 274-276 VBZ denotes is
T5329 248-250 IN denotes in
T5330 251-257 NN denotes design
T5331 258-260 IN denotes of
T5332 261-265 JJ denotes such
T5333 266-273 NNS denotes studies
T5334 277-281 IN denotes that
T5335 287-294 VBP denotes involve
T5336 282-286 PRP denotes they
T5337 295-305 NN denotes assessment
T5338 306-308 IN denotes of
T5339 309-310 DT denotes a
T5340 318-330 NN denotes polymorphism
T5341 311-317 JJ denotes single
T5342 331-333 CC denotes or
T5343 334-346 RB denotes occasionally
T5344 354-367 NNS denotes polymorphisms
T5345 346-348 , denotes ,
T5346 348-349 DT denotes a
T5347 350-353 JJ denotes few
T5348 367-368 . denotes .
T5349 368-646 sentence denotes Further, although the polymorphism assessed typically resides within a gene known to protect bronchial epithelium from carcinogens, oxidants, or DNA damage, the selection of the particular polymorphism for study is largely empiric, and not based on known functional properties.
T5350 369-376 RB denotes Further
T5351 581-583 VBZ denotes is
T5352 376-378 , denotes ,
T5353 378-386 IN denotes although
T5354 423-430 VBZ denotes resides
T5355 387-390 DT denotes the
T5356 391-403 NN denotes polymorphism
T5357 404-412 VBN denotes assessed
T5358 413-422 RB denotes typically
T5359 431-437 IN denotes within
T5360 438-439 DT denotes a
T5361 440-444 NN denotes gene
T5362 445-450 VBN denotes known
T5363 451-453 TO denotes to
T5364 454-461 VB denotes protect
T5365 462-471 JJ denotes bronchial
T5366 472-482 NN denotes epithelium
T5367 483-487 IN denotes from
T5368 488-499 NNS denotes carcinogens
T5369 499-501 , denotes ,
T5370 501-509 NNS denotes oxidants
T5371 509-511 , denotes ,
T5372 511-513 CC denotes or
T5373 514-517 NN denotes DNA
T5374 518-524 NN denotes damage
T5375 524-526 , denotes ,
T5376 526-529 DT denotes the
T5377 530-539 NN denotes selection
T5378 540-542 IN denotes of
T5379 543-546 DT denotes the
T5380 558-570 NN denotes polymorphism
T5381 547-557 JJ denotes particular
T5382 571-574 IN denotes for
T5383 575-580 NN denotes study
T5384 584-591 RB denotes largely
T5385 592-599 JJ denotes empiric
T5386 599-601 , denotes ,
T5387 601-604 CC denotes and
T5388 605-608 RB denotes not
T5389 609-614 VBN denotes based
T5390 615-617 IN denotes on
T5391 618-623 JJ denotes known
T5392 635-645 NNS denotes properties
T5393 624-634 JJ denotes functional
T5394 645-646 . denotes .
T5395 646-914 sentence denotes These are problems because multiple infrequent polymorphisms at different sites may all contribute to risk and unless the key polymorphisms can be identified through a functional test, a statistically valid assessment would require much larger study populations [27].
T5396 647-652 DT denotes These
T5397 653-656 VBP denotes are
T5398 657-665 NNS denotes problems
T5399 666-673 IN denotes because
T5400 735-745 VB denotes contribute
T5401 674-682 JJ denotes multiple
T5402 694-707 NNS denotes polymorphisms
T5403 683-693 JJ denotes infrequent
T5404 708-710 IN denotes at
T5405 711-720 JJ denotes different
T5406 721-726 NNS denotes sites
T5407 727-730 MD denotes may
T5408 731-734 RB denotes all
T5409 746-748 IN denotes to
T5410 749-753 NN denotes risk
T5411 754-757 CC denotes and
T5412 758-764 IN denotes unless
T5413 794-804 VBN denotes identified
T5414 765-768 DT denotes the
T5415 773-786 NNS denotes polymorphisms
T5416 769-772 JJ denotes key
T5417 787-790 MD denotes can
T5418 791-793 VB denotes be
T5419 871-878 VB denotes require
T5420 805-812 IN denotes through
T5421 813-814 DT denotes a
T5422 826-830 NN denotes test
T5423 815-825 JJ denotes functional
T5424 830-832 , denotes ,
T5425 832-833 DT denotes a
T5426 854-864 NN denotes assessment
T5427 834-847 RB denotes statistically
T5428 848-853 JJ denotes valid
T5429 865-870 MD denotes would
T5430 879-883 RB denotes much
T5431 884-890 JJR denotes larger
T5432 897-908 NNS denotes populations
T5433 891-896 NN denotes study
T5434 909-910 -LRB- denotes [
T5435 910-912 CD denotes 27
T5436 912-913 -RRB- denotes ]
T5437 913-914 . denotes .
R3240 T5281 T5282 nsubj assessment,been
R3245 T5283 T5281 prep of,assessment
R3253 T5284 T5285 det the,correlation
R3257 T5285 T5283 pobj correlation,of
R3261 T5286 T5285 prep between,correlation
R3266 T5287 T5288 det a,variation
R3270 T5288 T5286 pobj variation,between
R3275 T5289 T5288 amod particular,variation
R3278 T5290 T5288 prep in,variation
R3281 T5291 T5292 compound DNA,sequence
R3282 T5292 T5290 pobj sequence,in
R3285 T5293 T5288 punct ", ",variation
R3291 T5294 T5288 cc or,variation
R3295 T5295 T5288 conj polymorphism,variation
R3299 T5296 T5288 punct ", ",variation
R3304 T5297 T5288 cc and,variation
R3308 T5298 T5288 conj risk,variation
R3313 T5299 T5298 prep for,risk
R3317 T5300 T5299 pobj BC,for
R3321 T5301 T5282 aux has,been
R3323 T5302 T5303 det a,paradigm
R3328 T5303 T5282 attr paradigm,been
R3332 T5304 T5303 amod dominant,paradigm
R3336 T5305 T5282 prep for,been
R3343 T5306 T5307 amod many,years
R3347 T5307 T5305 pobj years,for
R3352 T5308 T5282 punct .,been
R3356 T5310 T5311 advmod Thus,far
R3363 T5280 T5281 amod Epidemiologic,assessment
R3364 T5313 T5312 punct ", ",met
R3365 T5314 T5315 det these,efforts
R3366 T5315 T5312 nsubj efforts,met
R3367 T5387 T5385 cc and,empiric
R3368 T5316 T5312 aux have,met
R3369 T5388 T5387 neg not,and
R3370 T5389 T5385 conj based,empiric
R3371 T5317 T5312 prep with,met
R3372 T5390 T5389 prep on,based
R3373 T5391 T5392 amod known,properties
R3374 T5318 T5319 amod scant,success
R3375 T5392 T5390 pobj properties,on
R3376 T5393 T5392 amod functional,properties
R3377 T5394 T5351 punct .,is
R3378 T5319 T5317 pobj success,with
R3379 T5396 T5397 nsubj These,are
R3380 T5320 T5321 punct [,26
R3381 T5398 T5397 attr problems,are
R3382 T5399 T5400 mark because,contribute
R3383 T5321 T5312 parataxis 26,met
R3384 T5400 T5397 advcl contribute,are
R3385 T5322 T5321 punct ],26
R3386 T5401 T5402 amod multiple,polymorphisms
R3387 T5323 T5312 punct .,met
R3388 T5402 T5400 nsubj polymorphisms,contribute
R3389 T5403 T5402 amod infrequent,polymorphisms
R3390 T5325 T5326 det A,limitation
R3391 T5404 T5402 prep at,polymorphisms
R3392 T5405 T5406 amod different,sites
R3393 T5406 T5404 pobj sites,at
R3394 T5407 T5400 aux may,contribute
R3395 T5408 T5400 advmod all,contribute
R3396 T5409 T5400 prep to,contribute
R3397 T5410 T5409 pobj risk,to
R3398 T5411 T5400 cc and,contribute
R3399 T5326 T5328 nsubj limitation,is
R3400 T5412 T5413 mark unless,identified
R3401 T5413 T5419 advcl identified,require
R3402 T5414 T5415 det the,polymorphisms
R3403 T5327 T5326 amod common,limitation
R3404 T5415 T5413 nsubjpass polymorphisms,identified
R3405 T5329 T5326 prep in,limitation
R3406 T5416 T5415 amod key,polymorphisms
R3407 T5417 T5413 aux can,identified
R3408 T5418 T5413 auxpass be,identified
R3409 T5419 T5400 conj require,contribute
R3410 T5420 T5413 prep through,identified
R3411 T5330 T5329 pobj design,in
R3412 T5421 T5422 det a,test
R3413 T5422 T5420 pobj test,through
R3414 T5423 T5422 amod functional,test
R3415 T5331 T5330 prep of,design
R3416 T5424 T5419 punct ", ",require
R3417 T5425 T5426 det a,assessment
R3418 T5426 T5419 nsubj assessment,require
R3419 T5332 T5333 amod such,studies
R3420 T5427 T5428 advmod statistically,valid
R3421 T5428 T5426 amod valid,assessment
R3422 T5429 T5419 aux would,require
R3423 T5333 T5331 pobj studies,of
R3424 T5430 T5431 advmod much,larger
R3425 T5431 T5432 amod larger,populations
R3426 T5432 T5419 dobj populations,require
R3427 T5433 T5432 compound study,populations
R3428 T5334 T5335 mark that,involve
R3429 T5434 T5435 punct [,27
R3430 T5435 T5397 parataxis 27,are
R3431 T5436 T5435 punct ],27
R3432 T5335 T5328 ccomp involve,is
R3433 T5437 T5397 punct .,are
R3434 T5336 T5335 nsubj they,involve
R3437 T5337 T5335 dobj assessment,involve
R3441 T5338 T5337 prep of,assessment
R3448 T5339 T5340 det a,polymorphism
R3452 T5340 T5338 pobj polymorphism,of
R3454 T5341 T5340 amod single,polymorphism
R3455 T5342 T5340 cc or,polymorphism
R3457 T5343 T5344 advmod occasionally,polymorphisms
R3459 T5344 T5340 conj polymorphisms,polymorphism
R3464 T5345 T5344 punct ", ",polymorphisms
R3468 T5346 T5344 det a,polymorphisms
R3472 T5347 T5344 amod few,polymorphisms
R3476 T5348 T5328 punct .,is
R3479 T5350 T5351 advmod Further,is
R3481 T5352 T5351 punct ", ",is
R3486 T5353 T5354 mark although,resides
R3489 T5354 T5351 advcl resides,is
R3494 T5355 T5356 det the,polymorphism
R3501 T5356 T5354 nsubj polymorphism,resides
R3504 T5357 T5356 acl assessed,polymorphism
R3505 T5358 T5354 advmod typically,resides
R3506 T5359 T5354 prep within,resides
R3507 T5360 T5361 det a,gene
R3510 T5361 T5359 pobj gene,within
R3513 T5362 T5361 acl known,gene
R3517 T5363 T5364 aux to,protect
R3521 T5364 T5362 xcomp protect,known
R3524 T5365 T5366 amod bronchial,epithelium
R3529 T5366 T5364 dobj epithelium,protect
R3532 T5367 T5364 prep from,protect
R3537 T5368 T5367 pobj carcinogens,from
R3541 T5369 T5368 punct ", ",carcinogens
R3544 T5370 T5368 conj oxidants,carcinogens
R3547 T5371 T5370 punct ", ",oxidants
R3552 T5372 T5370 cc or,oxidants
R3557 T5373 T5374 compound DNA,damage
R3560 T5374 T5370 conj damage,oxidants
R3564 T5375 T5351 punct ", ",is
R3567 T5376 T5377 det the,selection
R3570 T5377 T5351 nsubj selection,is
R3573 T5378 T5377 prep of,selection
R3576 T5379 T5380 det the,polymorphism
R3580 T5380 T5378 pobj polymorphism,of
R3584 T5381 T5380 amod particular,polymorphism
R3588 T5382 T5377 prep for,selection
R3592 T5383 T5382 pobj study,for
R3593 T5384 T5385 advmod largely,empiric
R3597 T5385 T5351 acomp empiric,is
R3603 T5386 T5385 punct ", ",empiric
R3361 T5311 T5312 advmod far,met

2_test

Id Subject Object Predicate Lexical cue
16255782-12496041-8759932 223-225 12496041 denotes 26
16255782-15177551-8759933 910-912 15177551 denotes 27

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3937 65-74 SO_EXT:sequence_variation_entity_or_quality denotes variation
T3938 78-81 CHEBI_SO_EXT:DNA denotes DNA
T3939 82-90 SO_EXT:biological_sequence denotes sequence
T3940 95-107 SO_EXT:polymorphism denotes polymorphism
T3941 318-330 SO_EXT:polymorphism denotes polymorphism
T3942 354-367 SO_EXT:polymorphism denotes polymorphisms
T3943 391-403 SO_EXT:polymorphism denotes polymorphism
T3944 440-444 SO_EXT:0000704 denotes gene
T3945 462-482 UBERON:0002031 denotes bronchial epithelium
T3946 488-499 CHEBI_EXT:50903 denotes carcinogens
T3947 501-509 CHEBI_EXT:63248 denotes oxidants
T3948 514-517 CHEBI_SO_EXT:DNA denotes DNA
T3949 558-570 SO_EXT:polymorphism denotes polymorphism
T3950 694-707 SO_EXT:polymorphism denotes polymorphisms
T3951 773-786 SO_EXT:polymorphism denotes polymorphisms

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4141 440-444 SO:0000704 denotes gene
T4142 462-482 UBERON:0002031 denotes bronchial epithelium
T4143 488-499 CHEBI:50903 denotes carcinogens
T4144 501-509 CHEBI:63248 denotes oxidants