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PMC:1283364 / 7273-7723 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1911 0-450 sentence denotes We incorporated the Swedish (KM570/571NL) and Indiana (V617F) mutations into the mo/huAPP695 cDNA (in BS-KS) by PCR using a four-primer strategy: first, two partially overlapping products were generated in separate reactions using primers that encode the desired mutations (Swedish forward: GGA GAT CTC TGA AGT GAA TCT GGA TGC AGA ATT CCG/Indiana reverse: GGG TGA TGA AAA TCA CGG TTG C; Indiana forward: CAA CCG TGA TTT TCA TCA CCC TGG/M13 reverse).
T1912 1-3 PRP denotes We
T1913 4-16 VBD denotes incorporated
T1914 194-203 VBN denotes generated
T1915 17-20 DT denotes the
T1916 63-72 NNS denotes mutations
T1917 21-28 NNP denotes Swedish
T1918 29-30 -LRB- denotes (
T1919 36-41 NN denotes 571NL
T1920 30-35 NN denotes KM570
T1921 35-36 HYPH denotes /
T1922 41-42 -RRB- denotes )
T1923 43-46 CC denotes and
T1924 47-54 NNP denotes Indiana
T1925 55-56 -LRB- denotes (
T1926 56-61 NN denotes V617F
T1927 61-62 -RRB- denotes )
T1928 73-77 IN denotes into
T1929 78-81 DT denotes the
T1930 94-98 NN denotes cDNA
T1931 82-84 NN denotes mo
T1932 85-93 NN denotes huAPP695
T1933 84-85 HYPH denotes /
T1934 99-100 -LRB- denotes (
T1935 100-102 IN denotes in
T1936 103-105 NN denotes BS
T1937 106-108 NN denotes KS
T1938 105-106 HYPH denotes -
T1939 108-109 -RRB- denotes )
T1940 110-112 IN denotes by
T1941 113-116 NN denotes PCR
T1942 117-122 VBG denotes using
T1943 123-124 DT denotes a
T1944 137-145 NN denotes strategy
T1945 125-129 CD denotes four
T1946 130-136 NN denotes primer
T1947 129-130 HYPH denotes -
T1948 145-147 : denotes :
T1949 147-152 RB denotes first
T1950 152-154 , denotes ,
T1951 154-157 CD denotes two
T1952 180-188 NNS denotes products
T1953 158-167 RB denotes partially
T1954 168-179 VBG denotes overlapping
T1955 189-193 VBD denotes were
T1956 204-206 IN denotes in
T1957 207-215 JJ denotes separate
T1958 216-225 NNS denotes reactions
T1959 226-231 VBG denotes using
T1960 232-239 NNS denotes primers
T1961 240-244 WDT denotes that
T1962 245-251 VBP denotes encode
T1963 252-255 DT denotes the
T1964 264-273 NNS denotes mutations
T1965 256-263 VBN denotes desired
T1966 274-275 -LRB- denotes (
T1967 437-440 NN denotes M13
T1968 275-282 NNP denotes Swedish
T1969 283-290 NN denotes forward
T1970 336-339 NN denotes CCG
T1971 290-292 : denotes :
T1972 292-295 NN denotes GGA
T1973 296-299 NN denotes GAT
T1974 300-303 NN denotes CTC
T1975 304-307 NN denotes TGA
T1976 308-311 NN denotes AGT
T1977 312-315 NN denotes GAA
T1978 316-319 NN denotes TCT
T1979 320-323 NNP denotes GGA
T1980 324-327 NNP denotes TGC
T1981 328-331 NNP denotes AGA
T1982 332-335 NNP denotes ATT
T1983 385-386 NN denotes C
T1984 339-340 HYPH denotes /
T1985 340-347 NNP denotes Indiana
T1986 348-355 NN denotes reverse
T1987 355-357 : denotes :
T1988 357-360 NN denotes GGG
T1989 361-364 NN denotes TGA
T1990 365-368 NN denotes TGA
T1991 369-372 NN denotes AAA
T1992 373-376 NN denotes TCA
T1993 377-380 NN denotes CGG
T1994 381-384 NN denotes TTG
T1995 386-387 : denotes ;
T1996 388-395 NNP denotes Indiana
T1997 396-403 NN denotes forward
T1998 403-405 : denotes :
T1999 405-408 NN denotes CAA
T2000 409-412 NN denotes CCG
T2001 413-416 NN denotes TGA
T2002 417-420 NN denotes TTT
T2003 421-424 NN denotes TCA
T2004 425-428 NN denotes TCA
T2005 429-432 NN denotes CCC
T2006 433-436 NN denotes TGG
T2007 436-437 HYPH denotes /
T2008 441-448 RB denotes reverse
T2009 448-449 -RRB- denotes )
T2010 449-450 . denotes .
R1278 T1912 T1913 nsubj We,incorporated
R1279 T1913 T1914 ccomp incorporated,generated
R1280 T1915 T1916 det the,mutations
R1281 T1916 T1913 dobj mutations,incorporated
R1282 T1917 T1916 amod Swedish,mutations
R1283 T1918 T1919 punct (,571NL
R1284 T1919 T1917 parataxis 571NL,Swedish
R1285 T1920 T1919 compound KM570,571NL
R1286 T1921 T1919 punct /,571NL
R1287 T1922 T1919 punct ),571NL
R1288 T1923 T1917 cc and,Swedish
R1289 T1924 T1917 conj Indiana,Swedish
R1290 T1925 T1926 punct (,V617F
R1291 T1926 T1924 parataxis V617F,Indiana
R1292 T1927 T1926 punct ),V617F
R1293 T1928 T1913 prep into,incorporated
R1294 T1929 T1930 det the,cDNA
R1295 T1930 T1928 pobj cDNA,into
R1296 T1931 T1932 compound mo,huAPP695
R1297 T1932 T1930 compound huAPP695,cDNA
R1298 T1933 T1932 punct /,huAPP695
R1299 T1934 T1930 punct (,cDNA
R1300 T1935 T1930 prep in,cDNA
R1301 T1936 T1937 compound BS,KS
R1302 T1937 T1935 pobj KS,in
R1303 T1938 T1937 punct -,KS
R1304 T1939 T1913 punct ),incorporated
R1305 T1940 T1913 prep by,incorporated
R1306 T1941 T1940 pobj PCR,by
R1307 T1942 T1913 advcl using,incorporated
R1308 T1943 T1944 det a,strategy
R1309 T1944 T1942 dobj strategy,using
R1310 T1945 T1946 nummod four,primer
R1311 T1946 T1944 compound primer,strategy
R1312 T1947 T1946 punct -,primer
R1313 T1948 T1914 punct : ,generated
R1314 T1949 T1914 advmod first,generated
R1315 T1950 T1914 punct ", ",generated
R1316 T1951 T1952 nummod two,products
R1317 T1952 T1914 nsubjpass products,generated
R1318 T1953 T1954 advmod partially,overlapping
R1319 T1954 T1952 amod overlapping,products
R1320 T1955 T1914 auxpass were,generated
R1321 T1956 T1914 prep in,generated
R1322 T1957 T1958 amod separate,reactions
R1323 T1958 T1956 pobj reactions,in
R1324 T1959 T1914 advcl using,generated
R1325 T1960 T1959 dobj primers,using
R1326 T1961 T1962 dep that,encode
R1327 T1962 T1960 relcl encode,primers
R1328 T1963 T1964 det the,mutations
R1329 T1964 T1962 dobj mutations,encode
R1330 T1965 T1964 amod desired,mutations
R1331 T1966 T1967 punct (,M13
R1332 T1967 T1962 parataxis M13,encode
R1333 T1968 T1969 compound Swedish,forward
R1334 T1969 T1970 dep forward,CCG
R1335 T1970 T1983 dep CCG,C
R1336 T1971 T1970 punct : ,CCG
R1337 T1972 T1970 compound GGA,CCG
R1338 T1973 T1970 compound GAT,CCG
R1339 T1974 T1970 compound CTC,CCG
R1340 T1975 T1970 compound TGA,CCG
R1341 T1976 T1970 compound AGT,CCG
R1342 T1977 T1970 compound GAA,CCG
R1343 T1978 T1970 compound TCT,CCG
R1344 T1979 T1970 compound GGA,CCG
R1345 T1980 T1970 compound TGC,CCG
R1346 T1981 T1970 compound AGA,CCG
R1347 T1982 T1970 compound ATT,CCG
R1348 T1983 T1967 dep C,M13
R1349 T1984 T1983 punct /,C
R1350 T1985 T1986 compound Indiana,reverse
R1351 T1986 T1983 dep reverse,C
R1352 T1987 T1983 punct : ,C
R1353 T1988 T1983 compound GGG,C
R1354 T1989 T1983 compound TGA,C
R1355 T1990 T1983 compound TGA,C
R1356 T1991 T1983 compound AAA,C
R1357 T1992 T1983 compound TCA,C
R1358 T1993 T1983 compound CGG,C
R1359 T1994 T1983 compound TTG,C
R1360 T1995 T1967 punct ;,M13
R1361 T1996 T1997 compound Indiana,forward
R1362 T1997 T1967 dep forward,M13
R1363 T1998 T1967 punct : ,M13
R1364 T1999 T1967 compound CAA,M13
R1365 T2000 T1967 compound CCG,M13
R1366 T2001 T1967 compound TGA,M13
R1367 T2002 T1967 compound TTT,M13
R1368 T2003 T1967 compound TCA,M13
R1369 T2004 T1967 compound TCA,M13
R1370 T2005 T1967 compound CCC,M13
R1371 T2006 T1967 compound TGG,M13
R1372 T2007 T1967 punct /,M13
R1373 T2008 T1967 advmod reverse,M13
R1374 T2009 T1967 punct ),M13
R1375 T2010 T1914 punct .,generated

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1516 63-72 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T1517 82-84 NCBITaxon:10088 denotes mo
T1518 94-98 SO_EXT:cDNA denotes cDNA
T1519 130-136 SO_EXT:0000112 denotes primer
T1520 232-239 SO_EXT:0000112 denotes primers
T1521 245-251 SO_EXT:sequence_coding_function denotes encode
T1522 264-273 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T1523 283-290 SO:0001030 denotes forward
T1524 348-355 SO:0001031 denotes reverse
T1525 396-403 SO:0001030 denotes forward
T1526 441-448 SO:0001031 denotes reverse

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1425 82-84 NCBITaxon:10088 denotes mo
T1426 130-136 SO:0000112 denotes primer
T1427 232-239 SO:0000112 denotes primers
T1428 283-290 SO:0001030 denotes forward
T1429 348-355 SO:0001031 denotes reverse
T1430 396-403 SO:0001030 denotes forward
T1431 441-448 SO:0001031 denotes reverse