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PMC:1283364 / 6551-6902 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1767 0-351 sentence denotes This 2-kb intron fragment was cloned into a TA cloning vector (Invitrogen, Carlsbad, California, United States), then excised by Asp718 digestion and ligated to the 6.8-kb Asp718 fragment of moPrP.XhoI containing exon 2, exon 3, the 3′ UTR, and pBluescript to generate an intermediate vector with all three exons and a central intron but no promoter.
T1768 1-5 DT denotes This
T1769 18-26 NN denotes fragment
T1770 6-7 CD denotes 2
T1771 8-10 NN denotes kb
T1772 7-8 HYPH denotes -
T1773 11-17 NN denotes intron
T1774 31-37 VBN denotes cloned
T1775 27-30 VBD denotes was
T1776 38-42 IN denotes into
T1777 43-44 DT denotes a
T1778 56-62 NN denotes vector
T1779 45-47 NN denotes TA
T1780 48-55 NN denotes cloning
T1781 63-64 -LRB- denotes (
T1782 64-74 NNP denotes Invitrogen
T1783 74-76 , denotes ,
T1784 76-84 NNP denotes Carlsbad
T1785 84-86 , denotes ,
T1786 86-96 NNP denotes California
T1787 96-98 , denotes ,
T1788 98-104 NNP denotes United
T1789 105-111 NNP denotes States
T1790 111-112 -RRB- denotes )
T1791 112-114 , denotes ,
T1792 114-118 RB denotes then
T1793 119-126 VBN denotes excised
T1794 127-129 IN denotes by
T1795 130-136 NN denotes Asp718
T1796 137-146 NN denotes digestion
T1797 147-150 CC denotes and
T1798 151-158 VBN denotes ligated
T1799 159-161 IN denotes to
T1800 162-165 DT denotes the
T1801 180-188 NN denotes fragment
T1802 166-169 CD denotes 6.8
T1803 170-172 NN denotes kb
T1804 169-170 HYPH denotes -
T1805 173-179 NN denotes Asp718
T1806 189-191 IN denotes of
T1807 192-202 NN denotes moPrP.XhoI
T1808 203-213 VBG denotes containing
T1809 214-218 NN denotes exon
T1810 219-220 CD denotes 2
T1811 220-222 , denotes ,
T1812 222-226 NN denotes exon
T1813 227-228 CD denotes 3
T1814 228-230 , denotes ,
T1815 230-233 DT denotes the
T1816 237-240 NN denotes UTR
T1817 234-235 CD denotes 3
T1818 235-236 SYM denotes ′
T1819 240-242 , denotes ,
T1820 242-245 CC denotes and
T1821 246-257 NN denotes pBluescript
T1822 258-260 TO denotes to
T1823 261-269 VB denotes generate
T1824 270-272 DT denotes an
T1825 286-292 NN denotes vector
T1826 273-285 JJ denotes intermediate
T1827 293-297 IN denotes with
T1828 298-301 DT denotes all
T1829 308-313 NNS denotes exons
T1830 302-307 CD denotes three
T1831 314-317 CC denotes and
T1832 318-319 DT denotes a
T1833 328-334 NN denotes intron
T1834 320-327 JJ denotes central
T1835 335-338 CC denotes but
T1836 339-341 DT denotes no
T1837 342-350 NN denotes promoter
T1838 350-351 . denotes .
R1140 T1768 T1769 det This,fragment
R1142 T1770 T1771 nummod 2,kb
R1143 T1771 T1769 compound kb,fragment
R1144 T1772 T1771 punct -,kb
R1145 T1773 T1769 compound intron,fragment
R1146 T1775 T1774 aux was,cloned
R1147 T1776 T1774 prep into,cloned
R1148 T1777 T1778 det a,vector
R1149 T1778 T1776 pobj vector,into
R1150 T1779 T1780 compound TA,cloning
R1151 T1780 T1778 compound cloning,vector
R1152 T1781 T1782 punct (,Invitrogen
R1153 T1782 T1778 parataxis Invitrogen,vector
R1154 T1783 T1782 punct ", ",Invitrogen
R1155 T1784 T1782 npadvmod Carlsbad,Invitrogen
R1156 T1785 T1782 punct ", ",Invitrogen
R1157 T1786 T1782 npadvmod California,Invitrogen
R1158 T1787 T1782 punct ", ",Invitrogen
R1159 T1788 T1789 compound United,States
R1160 T1789 T1782 npadvmod States,Invitrogen
R1161 T1790 T1782 punct ),Invitrogen
R1162 T1791 T1774 punct ", ",cloned
R1163 T1792 T1793 advmod then,excised
R1164 T1793 T1774 conj excised,cloned
R1165 T1794 T1793 prep by,excised
R1166 T1795 T1796 compound Asp718,digestion
R1167 T1796 T1794 pobj digestion,by
R1168 T1797 T1793 cc and,excised
R1169 T1798 T1793 conj ligated,excised
R1170 T1799 T1798 prep to,ligated
R1171 T1800 T1801 det the,fragment
R1173 T1802 T1803 nummod 6.8,kb
R1174 T1803 T1801 compound kb,fragment
R1175 T1804 T1803 punct -,kb
R1176 T1805 T1801 compound Asp718,fragment
R1177 T1806 T1801 prep of,fragment
R1178 T1807 T1806 pobj moPrP.XhoI,of
R1179 T1808 T1801 acl containing,fragment
R1180 T1809 T1808 dobj exon,containing
R1181 T1810 T1809 nummod 2,exon
R1182 T1811 T1809 punct ", ",exon
R1183 T1812 T1809 conj exon,exon
R1184 T1813 T1812 nummod 3,exon
R1185 T1814 T1812 punct ", ",exon
R1186 T1815 T1816 det the,UTR
R1187 T1816 T1812 conj UTR,exon
R1188 T1817 T1816 nummod 3,UTR
R1189 T1818 T1817 punct ′,3
R1190 T1819 T1816 punct ", ",UTR
R1191 T1820 T1816 cc and,UTR
R1192 T1821 T1816 conj pBluescript,UTR
R1193 T1822 T1823 aux to,generate
R1194 T1823 T1774 advcl generate,cloned
R1195 T1824 T1825 det an,vector
R1196 T1825 T1823 dobj vector,generate
R1197 T1826 T1825 amod intermediate,vector
R1198 T1827 T1823 prep with,generate
R1199 T1828 T1829 det all,exons
R1200 T1829 T1827 pobj exons,with
R1201 T1830 T1829 nummod three,exons
R1202 T1831 T1829 cc and,exons
R1203 T1832 T1833 det a,intron
R1204 T1833 T1829 conj intron,exons
R1205 T1834 T1833 amod central,intron
R1206 T1835 T1829 cc but,exons
R1207 T1836 T1837 det no,promoter
R1208 T1837 T1829 conj promoter,exons
R1209 T1838 T1774 punct .,cloned
R1141 T1769 T1774 nsubj fragment,cloned
R1172 T1801 T1799 pobj fragment,to

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T1476 9-10 CHEBI_SO_EXT:base denotes b
T1477 11-17 SO_EXT:0000188 denotes intron
T1478 31-37 SO_EXT:sequence_cloning_process denotes cloned
T1479 48-55 SO_EXT:sequence_cloning_process denotes cloning
T1480 56-62 SO_EXT:0000440 denotes vector
T1481 119-126 SO_EXT:sequence_deletion_process denotes excised
T1482 151-158 GO:0006266 denotes ligated
T1483 171-172 CHEBI_SO_EXT:base denotes b
T1484 192-197 PR_EXT:P04925 denotes moPrP
T1485 214-218 SO_EXT:0000147 denotes exon
T1486 222-226 SO_EXT:0000147 denotes exon
T1487 234-240 SO_EXT:0000205 denotes 3′ UTR
T1488 286-292 SO_EXT:0000440 denotes vector
T1489 308-313 SO_EXT:0000147 denotes exons
T1490 328-334 SO_EXT:0000188 denotes intron
T1491 342-350 SO_EXT:0000167 denotes promoter

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T1395 11-17 SO:0000188 denotes intron
T1396 56-62 SO:0000440 denotes vector
T1397 151-158 GO:0006266 denotes ligated
T1398 192-197 PR:P04925 denotes moPrP
T1399 214-218 SO:0000147 denotes exon
T1400 222-226 SO:0000147 denotes exon
T1401 234-240 SO:0000205 denotes 3′ UTR
T1402 286-292 SO:0000440 denotes vector
T1403 308-313 SO:0000147 denotes exons
T1404 328-334 SO:0000188 denotes intron
T1405 342-350 SO:0000167 denotes promoter