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PMC:1283364 / 13492-14268 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T3715 0-4 CD denotes Five
T3716 5-15 NNS denotes micrograms
T3717 142-150 VBN denotes filtered
T3718 16-19 IN denotes per
T3719 20-26 NN denotes sample
T3720 27-29 IN denotes of
T3721 30-35 JJ denotes total
T3722 36-39 NN denotes RNA
T3723 40-49 VBN denotes extracted
T3724 50-54 IN denotes from
T3725 55-60 JJ denotes fresh
T3726 61-67 VBN denotes frozen
T3727 60-61 HYPH denotes -
T3728 68-73 NN denotes brain
T3729 73-75 , denotes ,
T3730 75-80 NN denotes liver
T3731 80-82 , denotes ,
T3732 82-88 NN denotes kidney
T3733 88-90 , denotes ,
T3734 90-95 NN denotes heart
T3735 95-97 , denotes ,
T3736 97-101 NN denotes lung
T3737 101-103 , denotes ,
T3738 103-109 NN denotes spleen
T3739 109-111 , denotes ,
T3740 111-114 CC denotes and
T3741 115-123 JJ denotes skeletal
T3742 124-130 NN denotes muscle
T3743 131-134 VBD denotes was
T3744 135-141 NN denotes vacuum
T3745 141-142 HYPH denotes -
T3746 151-158 IN denotes through
T3747 159-163 CD denotes 0.45
T3748 164-166 NN denotes μm
T3749 163-164 HYPH denotes -
T3750 176-190 NN denotes nitrocellulose
T3751 167-175 NNP denotes Optitran
T3752 190-191 . denotes .
T3753 191-359 sentence denotes After several washes through the manifold with 10× SSC, blots were UV-cross-linked and probed with a radiolabeled ∼350-bp BglII–XhoI cDNA fragment of mo/huAPP695 cDNA.
T3754 192-197 IN denotes After
T3755 262-274 VBN denotes cross-linked
T3756 198-205 JJ denotes several
T3757 206-212 NNS denotes washes
T3758 213-220 IN denotes through
T3759 221-224 DT denotes the
T3760 225-233 NN denotes manifold
T3761 234-238 IN denotes with
T3762 239-241 CD denotes 10
T3763 243-246 NN denotes SSC
T3764 241-242 SYM denotes ×
T3765 246-248 , denotes ,
T3766 248-253 NNS denotes blots
T3767 254-258 VBD denotes were
T3768 259-261 NN denotes UV
T3769 261-262 HYPH denotes -
T3770 275-278 CC denotes and
T3771 279-285 VBN denotes probed
T3772 286-290 IN denotes with
T3773 291-292 DT denotes a
T3774 330-338 NN denotes fragment
T3775 293-305 VBN denotes radiolabeled
T3776 306-307 SYM denotes ∼
T3777 307-310 CD denotes 350
T3778 311-313 NN denotes bp
T3779 310-311 HYPH denotes -
T3780 314-319 NN denotes BglII
T3781 320-324 NN denotes XhoI
T3782 319-320 HYPH denotes –
T3783 325-329 NN denotes cDNA
T3784 339-341 IN denotes of
T3785 342-344 NN denotes mo
T3786 345-353 NN denotes huAPP695
T3787 344-345 HYPH denotes /
T3788 354-358 NN denotes cDNA
T3789 358-359 . denotes .
T3790 359-691 sentence denotes After hybridizing overnight at 65 °C in 1% BSA/1 mM EDTA/0.5 M sodium phosphate buffer (pH 7.2)/7% SDS [20], the blots were washed twice at 65 °C for 30 min each in 0.1% BSA/1 mM EDTA/40 mM sodium phosphate buffer (pH 7.2)/5% SDS before two final 30-min washes at 65 °C with 1 mM EDTA/40 mM sodium phosphate buffer (pH 7.2)/1% SDS.
T3791 360-365 IN denotes After
T3792 484-490 VBN denotes washed
T3793 366-377 VBG denotes hybridizing
T3794 378-387 RB denotes overnight
T3795 388-390 IN denotes at
T3796 391-393 CD denotes 65
T3797 394-396 NN denotes °C
T3798 397-399 IN denotes in
T3799 400-401 CD denotes 1
T3800 401-402 NN denotes %
T3801 403-406 NN denotes BSA
T3802 406-407 HYPH denotes /
T3803 407-408 CD denotes 1
T3804 409-411 NN denotes mM
T3805 412-416 NN denotes EDTA
T3806 416-417 HYPH denotes /
T3807 417-420 CD denotes 0.5
T3808 421-422 NN denotes M
T3809 440-446 NN denotes buffer
T3810 423-429 NN denotes sodium
T3811 430-439 NN denotes phosphate
T3812 447-448 -LRB- denotes (
T3813 448-450 NN denotes pH
T3814 451-454 CD denotes 7.2
T3815 454-455 -RRB- denotes )
T3816 455-456 HYPH denotes /
T3817 456-457 CD denotes 7
T3818 457-458 NN denotes %
T3819 459-462 NN denotes SDS
T3820 463-464 -LRB- denotes [
T3821 464-466 CD denotes 20
T3822 466-467 -RRB- denotes ]
T3823 467-469 , denotes ,
T3824 469-472 DT denotes the
T3825 473-478 NNS denotes blots
T3826 479-483 VBD denotes were
T3827 491-496 RB denotes twice
T3828 497-499 IN denotes at
T3829 500-502 CD denotes 65
T3830 503-505 NN denotes °C
T3831 506-509 IN denotes for
T3832 510-512 CD denotes 30
T3833 513-516 NN denotes min
T3834 517-521 DT denotes each
T3835 522-524 IN denotes in
T3836 525-528 CD denotes 0.1
T3837 528-529 NN denotes %
T3838 530-533 NN denotes BSA
T3839 533-534 HYPH denotes /
T3840 534-535 CD denotes 1
T3841 536-538 NN denotes mM
T3842 539-543 NN denotes EDTA
T3843 543-544 HYPH denotes /
T3844 544-546 CD denotes 40
T3845 547-549 NN denotes mM
T3846 567-573 NN denotes buffer
T3847 550-556 NN denotes sodium
T3848 557-566 NN denotes phosphate
T3849 574-575 -LRB- denotes (
T3850 575-577 NN denotes pH
T3851 578-581 CD denotes 7.2
T3852 581-582 -RRB- denotes )
T3853 582-583 HYPH denotes /
T3854 583-584 CD denotes 5
T3855 584-585 NN denotes %
T3856 586-589 NN denotes SDS
T3857 590-596 IN denotes before
T3858 597-600 CD denotes two
T3859 614-620 NNS denotes washes
T3860 601-606 JJ denotes final
T3861 607-609 CD denotes 30
T3862 610-613 NN denotes min
T3863 609-610 HYPH denotes -
T3864 621-623 IN denotes at
T3865 624-626 CD denotes 65
T3866 627-629 NN denotes °C
T3867 630-634 IN denotes with
T3868 635-636 CD denotes 1
T3869 637-639 NN denotes mM
T3870 640-644 NN denotes EDTA
T3871 644-645 HYPH denotes /
T3872 645-647 CD denotes 40
T3873 648-650 NN denotes mM
T3874 668-674 NN denotes buffer
T3875 651-657 NN denotes sodium
T3876 658-667 NN denotes phosphate
T3877 675-676 -LRB- denotes (
T3878 676-678 NN denotes pH
T3879 679-682 CD denotes 7.2
T3880 682-683 -RRB- denotes )
T3881 683-684 HYPH denotes /
T3882 684-685 CD denotes 1
T3883 685-686 NN denotes %
T3884 687-690 NN denotes SDS
T3885 690-691 . denotes .
T3886 691-776 sentence denotes Blots were wrapped wet and exposed to phosphorscreens overnight at room temperature.
T3887 692-697 NNS denotes Blots
T3888 703-710 VBN denotes wrapped
T3889 698-702 VBD denotes were
T3890 711-714 JJ denotes wet
T3891 715-718 CC denotes and
T3892 719-726 VBN denotes exposed
T3893 727-729 IN denotes to
T3894 730-745 NNS denotes phosphorscreens
T3895 746-755 RB denotes overnight
T3896 756-758 IN denotes at
T3897 759-763 NN denotes room
T3898 764-775 NN denotes temperature
T3899 775-776 . denotes .
R2537 T3715 T3716 nummod Five,micrograms
R2538 T3716 T3717 nsubjpass micrograms,filtered
R2539 T3718 T3716 prep per,micrograms
R2540 T3719 T3718 pobj sample,per
R2541 T3720 T3719 prep of,sample
R2542 T3721 T3722 amod total,RNA
R2543 T3722 T3720 pobj RNA,of
R2544 T3723 T3722 acl extracted,RNA
R2545 T3724 T3723 prep from,extracted
R2546 T3725 T3726 amod fresh,frozen
R2547 T3726 T3728 amod frozen,brain
R2548 T3727 T3726 punct -,frozen
R2549 T3728 T3724 pobj brain,from
R2550 T3729 T3728 punct ", ",brain
R2551 T3730 T3728 conj liver,brain
R2552 T3731 T3730 punct ", ",liver
R2553 T3732 T3730 conj kidney,liver
R2554 T3733 T3732 punct ", ",kidney
R2555 T3734 T3732 conj heart,kidney
R2556 T3735 T3734 punct ", ",heart
R2557 T3736 T3734 conj lung,heart
R2558 T3737 T3736 punct ", ",lung
R2559 T3738 T3736 conj spleen,lung
R2560 T3739 T3738 punct ", ",spleen
R2561 T3740 T3738 cc and,spleen
R2562 T3741 T3742 amod skeletal,muscle
R2563 T3742 T3738 conj muscle,spleen
R2564 T3743 T3717 auxpass was,filtered
R2565 T3744 T3717 dep vacuum,filtered
R2566 T3745 T3717 punct -,filtered
R2567 T3746 T3717 prep through,filtered
R2568 T3747 T3748 nummod 0.45,μm
R2569 T3748 T3750 compound μm,nitrocellulose
R2570 T3749 T3748 punct -,μm
R2571 T3750 T3746 pobj nitrocellulose,through
R2572 T3751 T3750 compound Optitran,nitrocellulose
R2573 T3752 T3717 punct .,filtered
R2574 T3754 T3755 prep After,cross-linked
R2575 T3756 T3757 amod several,washes
R2576 T3757 T3754 pobj washes,After
R2577 T3758 T3757 prep through,washes
R2578 T3759 T3760 det the,manifold
R2579 T3760 T3758 pobj manifold,through
R2580 T3761 T3757 prep with,washes
R2581 T3762 T3763 nummod 10,SSC
R2582 T3763 T3761 pobj SSC,with
R2583 T3764 T3762 punct ×,10
R2584 T3765 T3755 punct ", ",cross-linked
R2585 T3766 T3755 nsubjpass blots,cross-linked
R2586 T3767 T3755 auxpass were,cross-linked
R2587 T3768 T3755 dep UV,cross-linked
R2588 T3769 T3755 punct -,cross-linked
R2589 T3770 T3755 cc and,cross-linked
R2590 T3771 T3755 conj probed,cross-linked
R2591 T3772 T3771 prep with,probed
R2592 T3773 T3774 det a,fragment
R2593 T3774 T3772 pobj fragment,with
R2594 T3775 T3774 amod radiolabeled,fragment
R2595 T3776 T3777 punct ∼,350
R2596 T3777 T3778 nummod 350,bp
R2597 T3778 T3774 compound bp,fragment
R2598 T3779 T3778 punct -,bp
R2599 T3780 T3781 compound BglII,XhoI
R2600 T3781 T3774 compound XhoI,fragment
R2601 T3782 T3781 punct –,XhoI
R2602 T3783 T3774 compound cDNA,fragment
R2603 T3784 T3774 prep of,fragment
R2604 T3785 T3786 compound mo,huAPP695
R2605 T3786 T3788 compound huAPP695,cDNA
R2606 T3787 T3786 punct /,huAPP695
R2607 T3788 T3784 pobj cDNA,of
R2608 T3789 T3755 punct .,cross-linked
R2609 T3791 T3792 prep After,washed
R2610 T3793 T3791 pcomp hybridizing,After
R2611 T3794 T3793 advmod overnight,hybridizing
R2612 T3795 T3793 prep at,hybridizing
R2613 T3796 T3797 nummod 65,°C
R2614 T3797 T3795 pobj °C,at
R2615 T3798 T3793 prep in,hybridizing
R2616 T3799 T3800 nummod 1,%
R2617 T3800 T3801 compound %,BSA
R2618 T3801 T3798 pobj BSA,in
R2619 T3802 T3801 punct /,BSA
R2620 T3803 T3804 nummod 1,mM
R2621 T3804 T3805 compound mM,EDTA
R2622 T3805 T3801 appos EDTA,BSA
R2623 T3806 T3801 punct /,BSA
R2624 T3807 T3808 nummod 0.5,M
R2625 T3808 T3809 compound M,buffer
R2626 T3809 T3801 appos buffer,BSA
R2627 T3810 T3809 compound sodium,buffer
R2628 T3811 T3809 compound phosphate,buffer
R2629 T3812 T3813 punct (,pH
R2630 T3813 T3809 parataxis pH,buffer
R2631 T3814 T3813 nummod 7.2,pH
R2632 T3815 T3813 punct ),pH
R2633 T3816 T3801 punct /,BSA
R2634 T3817 T3818 nummod 7,%
R2635 T3818 T3819 compound %,SDS
R2636 T3819 T3801 appos SDS,BSA
R2637 T3820 T3821 punct [,20
R2638 T3821 T3819 parataxis 20,SDS
R2639 T3822 T3821 punct ],20
R2640 T3823 T3792 punct ", ",washed
R2641 T3824 T3825 det the,blots
R2642 T3825 T3792 nsubjpass blots,washed
R2643 T3826 T3792 auxpass were,washed
R2644 T3827 T3792 advmod twice,washed
R2645 T3828 T3792 prep at,washed
R2646 T3829 T3830 nummod 65,°C
R2647 T3830 T3828 pobj °C,at
R2648 T3831 T3792 prep for,washed
R2649 T3832 T3833 nummod 30,min
R2650 T3833 T3831 pobj min,for
R2651 T3834 T3833 appos each,min
R2652 T3835 T3792 prep in,washed
R2653 T3836 T3837 nummod 0.1,%
R2654 T3837 T3838 compound %,BSA
R2655 T3838 T3835 pobj BSA,in
R2656 T3839 T3838 punct /,BSA
R2657 T3840 T3841 nummod 1,mM
R2658 T3841 T3842 compound mM,EDTA
R2659 T3842 T3838 appos EDTA,BSA
R2660 T3843 T3838 punct /,BSA
R2661 T3844 T3845 nummod 40,mM
R2662 T3845 T3846 compound mM,buffer
R2663 T3846 T3838 appos buffer,BSA
R2664 T3847 T3846 compound sodium,buffer
R2665 T3848 T3846 compound phosphate,buffer
R2666 T3849 T3850 punct (,pH
R2667 T3850 T3846 parataxis pH,buffer
R2668 T3851 T3850 nummod 7.2,pH
R2669 T3852 T3850 punct ),pH
R2670 T3853 T3838 punct /,BSA
R2671 T3854 T3855 nummod 5,%
R2672 T3855 T3856 compound %,SDS
R2673 T3856 T3838 appos SDS,BSA
R2674 T3857 T3792 prep before,washed
R2675 T3858 T3859 nummod two,washes
R2676 T3859 T3857 pobj washes,before
R2677 T3860 T3859 amod final,washes
R2678 T3861 T3862 nummod 30,min
R2679 T3862 T3859 compound min,washes
R2680 T3863 T3862 punct -,min
R2681 T3864 T3859 prep at,washes
R2682 T3865 T3866 nummod 65,°C
R2683 T3866 T3864 pobj °C,at
R2684 T3867 T3859 prep with,washes
R2685 T3868 T3869 nummod 1,mM
R2686 T3869 T3870 compound mM,EDTA
R2687 T3870 T3867 pobj EDTA,with
R2688 T3871 T3870 punct /,EDTA
R2689 T3872 T3873 nummod 40,mM
R2690 T3873 T3874 compound mM,buffer
R2691 T3874 T3870 appos buffer,EDTA
R2692 T3875 T3874 compound sodium,buffer
R2693 T3876 T3874 compound phosphate,buffer
R2694 T3877 T3878 punct (,pH
R2695 T3878 T3874 parataxis pH,buffer
R2696 T3879 T3878 nummod 7.2,pH
R2697 T3880 T3878 punct ),pH
R2698 T3881 T3870 punct /,EDTA
R2699 T3882 T3883 nummod 1,%
R2700 T3883 T3884 compound %,SDS
R2701 T3884 T3870 appos SDS,EDTA
R2702 T3885 T3792 punct .,washed
R2703 T3887 T3888 nsubjpass Blots,wrapped
R2704 T3889 T3888 auxpass were,wrapped
R2705 T3890 T3888 advcl wet,wrapped
R2706 T3891 T3888 cc and,wrapped
R2707 T3892 T3888 conj exposed,wrapped
R2708 T3893 T3892 prep to,exposed
R2709 T3894 T3893 pobj phosphorscreens,to
R2710 T3895 T3892 advmod overnight,exposed
R2711 T3896 T3892 prep at,exposed
R2712 T3897 T3898 compound room,temperature
R2713 T3898 T3896 pobj temperature,at
R2714 T3899 T3888 punct .,wrapped

2_test

Id Subject Object Predicate Lexical cue
16279840-6326095-86242759 464-466 6326095 denotes 20
T72572 464-466 6326095 denotes 20

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3680 36-39 CHEBI_SO_EXT:RNA denotes RNA
T3681 68-73 UBERON:0000955 denotes brain
T3682 75-80 UBERON:0002107 denotes liver
T3683 82-88 UBERON:0002113 denotes kidney
T3684 90-95 UBERON:0000948 denotes heart
T3685 97-101 UBERON:0002048 denotes lung
T3686 103-109 UBERON:0002106 denotes spleen
T3687 115-130 UBERON_EXT:skeletal_muscle_organ_or_tissue denotes skeletal muscle
T3688 176-190 CHEBI:53325 denotes nitrocellulose
T3689 243-246 CHEBI_EXT:saline_sodium_citrate denotes SSC
T3690 268-274 SO_EXT:sequence_fusion_process denotes linked
T3691 268-274 MOP:0000779 denotes linked
T3692 293-305 CHEBI_EXT:radiolabel_process denotes radiolabeled
T3693 311-313 SO_EXT:0000028 denotes bp
T3694 325-329 SO_EXT:cDNA denotes cDNA
T3695 342-344 NCBITaxon:10088 denotes mo
T3696 354-358 SO_EXT:cDNA denotes cDNA
T3697 366-377 GO:0097617 denotes hybridizing
T3698 412-416 CHEBI_EXT:EDTA denotes EDTA
T3699 423-439 CHEBI:37586 denotes sodium phosphate
T3700 440-446 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T3701 459-462 CHEBI:8984 denotes SDS
T3702 539-543 CHEBI_EXT:EDTA denotes EDTA
T3703 550-566 CHEBI:37586 denotes sodium phosphate
T3704 567-573 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T3705 586-589 CHEBI:8984 denotes SDS
T3706 640-644 CHEBI_EXT:EDTA denotes EDTA
T3707 651-667 CHEBI:37586 denotes sodium phosphate
T3708 668-674 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T3709 687-690 CHEBI:8984 denotes SDS

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3661 68-73 UBERON:0000955 denotes brain
T3662 75-80 UBERON:0002107 denotes liver
T3663 82-88 UBERON:0002113 denotes kidney
T3664 90-95 UBERON:0000948 denotes heart
T3665 97-101 UBERON:0002048 denotes lung
T3666 103-109 UBERON:0002106 denotes spleen
T3667 115-123 UBERON:0004288 denotes skeletal
T3668 176-190 CHEBI:53325 denotes nitrocellulose
T3669 268-274 MOP:0000779 denotes linked
T3670 311-313 SO:0000028 denotes bp
T3671 342-344 NCBITaxon:10088 denotes mo
T3672 366-377 GO:0097617 denotes hybridizing
T3673 423-439 CHEBI:37586 denotes sodium phosphate
T3674 459-462 CHEBI:8984 denotes SDS
T3675 550-566 CHEBI:37586 denotes sodium phosphate
T3676 586-589 CHEBI:8984 denotes SDS
T3677 651-667 CHEBI:37586 denotes sodium phosphate
T3678 687-690 CHEBI:8984 denotes SDS