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PMC:1255741 / 8211-8546 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T2482 0-335 sentence denotes These mice carry, in addition to a wild-type GluR-B allele, a gene-targeted GluR-Bneo allele in which the intronic sequence critical for GluR-B pre-mRNA editing at the Q/R site is replaced by a floxed TK-neo gene, which severely reduces splicing of the modified intron and hence attenuates the expression of the GluR-Bneo allele [60].
T2483 1-6 DT denotes These
T2484 7-11 NNS denotes mice
T2485 12-17 VBP denotes carry
T2486 17-19 , denotes ,
T2487 19-21 IN denotes in
T2488 22-30 NN denotes addition
T2489 31-33 IN denotes to
T2490 34-35 DT denotes a
T2491 53-59 NN denotes allele
T2492 36-40 JJ denotes wild
T2493 41-45 NN denotes type
T2494 40-41 HYPH denotes -
T2495 46-50 NN denotes GluR
T2496 51-52 NN denotes B
T2497 50-51 HYPH denotes -
T2498 59-61 , denotes ,
T2499 61-62 DT denotes a
T2500 87-93 NN denotes allele
T2501 63-67 NN denotes gene
T2502 68-76 VBN denotes targeted
T2503 67-68 HYPH denotes -
T2504 77-81 NN denotes GluR
T2505 82-86 NN denotes Bneo
T2506 81-82 HYPH denotes -
T2507 94-96 IN denotes in
T2508 181-189 VBN denotes replaced
T2509 97-102 WDT denotes which
T2510 103-106 DT denotes the
T2511 116-124 NN denotes sequence
T2512 107-115 JJ denotes intronic
T2513 125-133 JJ denotes critical
T2514 134-137 IN denotes for
T2515 138-142 NN denotes GluR
T2516 143-144 NN denotes B
T2517 142-143 HYPH denotes -
T2518 154-161 NN denotes editing
T2519 145-153 NN denotes pre-mRNA
T2520 162-164 IN denotes at
T2521 165-168 DT denotes the
T2522 173-177 NN denotes site
T2523 169-170 NN denotes Q
T2524 171-172 NN denotes R
T2525 170-171 HYPH denotes /
T2526 178-180 VBZ denotes is
T2527 190-192 IN denotes by
T2528 193-194 DT denotes a
T2529 209-213 NN denotes gene
T2530 195-201 VBN denotes floxed
T2531 202-204 NN denotes TK
T2532 205-208 NN denotes neo
T2533 204-205 HYPH denotes -
T2534 213-215 , denotes ,
T2535 215-220 WDT denotes which
T2536 230-237 VBZ denotes reduces
T2537 221-229 RB denotes severely
T2538 238-246 NN denotes splicing
T2539 247-249 IN denotes of
T2540 250-253 DT denotes the
T2541 263-269 NN denotes intron
T2542 254-262 VBN denotes modified
T2543 270-273 CC denotes and
T2544 274-279 RB denotes hence
T2545 280-290 VBZ denotes attenuates
T2546 291-294 DT denotes the
T2547 295-305 NN denotes expression
T2548 306-308 IN denotes of
T2549 309-312 DT denotes the
T2550 323-329 NN denotes allele
T2551 313-317 NN denotes GluR
T2552 318-322 NN denotes Bneo
T2553 317-318 HYPH denotes -
T2554 330-331 -LRB- denotes [
T2555 331-333 CD denotes 60
T2556 333-334 -RRB- denotes ]
T2557 334-335 . denotes .
R1504 T2483 T2484 det These,mice
R1505 T2484 T2485 nsubj mice,carry
R1506 T2486 T2485 punct ", ",carry
R1507 T2487 T2485 prep in,carry
R1508 T2488 T2487 pobj addition,in
R1509 T2489 T2488 prep to,addition
R1510 T2490 T2491 det a,allele
R1511 T2491 T2489 pobj allele,to
R1512 T2492 T2493 amod wild,type
R1513 T2493 T2491 compound type,allele
R1514 T2494 T2493 punct -,type
R1515 T2495 T2496 compound GluR,B
R1516 T2496 T2491 compound B,allele
R1517 T2497 T2496 punct -,B
R1518 T2498 T2485 punct ", ",carry
R1519 T2499 T2500 det a,allele
R1520 T2500 T2485 dobj allele,carry
R1521 T2501 T2502 npadvmod gene,targeted
R1522 T2502 T2500 amod targeted,allele
R1523 T2503 T2502 punct -,targeted
R1524 T2504 T2505 compound GluR,Bneo
R1525 T2505 T2500 compound Bneo,allele
R1526 T2506 T2505 punct -,Bneo
R1527 T2507 T2508 prep in,replaced
R1528 T2508 T2500 relcl replaced,allele
R1529 T2509 T2507 pobj which,in
R1530 T2510 T2511 det the,sequence
R1531 T2511 T2508 nsubjpass sequence,replaced
R1532 T2512 T2511 amod intronic,sequence
R1533 T2513 T2511 amod critical,sequence
R1534 T2514 T2513 prep for,critical
R1535 T2515 T2516 compound GluR,B
R1536 T2516 T2518 compound B,editing
R1537 T2517 T2516 punct -,B
R1538 T2518 T2514 pobj editing,for
R1539 T2519 T2518 compound pre-mRNA,editing
R1540 T2520 T2518 prep at,editing
R1541 T2521 T2522 det the,site
R1542 T2522 T2520 pobj site,at
R1543 T2523 T2524 compound Q,R
R1544 T2524 T2522 compound R,site
R1545 T2525 T2524 punct /,R
R1546 T2526 T2508 auxpass is,replaced
R1547 T2527 T2508 agent by,replaced
R1548 T2528 T2529 det a,gene
R1550 T2530 T2529 amod floxed,gene
R1551 T2531 T2532 compound TK,neo
R1552 T2532 T2529 compound neo,gene
R1553 T2533 T2532 punct -,neo
R1554 T2534 T2529 punct ", ",gene
R1555 T2535 T2536 dep which,reduces
R1556 T2536 T2529 relcl reduces,gene
R1557 T2537 T2536 advmod severely,reduces
R1558 T2538 T2536 dobj splicing,reduces
R1559 T2539 T2538 prep of,splicing
R1560 T2540 T2541 det the,intron
R1561 T2541 T2539 pobj intron,of
R1562 T2542 T2541 amod modified,intron
R1563 T2543 T2536 cc and,reduces
R1564 T2544 T2545 advmod hence,attenuates
R1565 T2545 T2536 conj attenuates,reduces
R1566 T2546 T2547 det the,expression
R1567 T2547 T2545 dobj expression,attenuates
R1568 T2548 T2547 prep of,expression
R1569 T2549 T2550 det the,allele
R1570 T2550 T2548 pobj allele,of
R1571 T2551 T2552 compound GluR,Bneo
R1572 T2552 T2550 compound Bneo,allele
R1573 T2553 T2552 punct -,Bneo
R1574 T2554 T2555 punct [,60
R1575 T2555 T2485 parataxis 60,carry
R1576 T2556 T2555 punct ],60
R1577 T2557 T2485 punct .,carry
R1549 T2529 T2527 pobj gene,by

2_test

Id Subject Object Predicate Lexical cue
16216087-10195181-84723733 331-333 10195181 denotes 60
T18229 331-333 10195181 denotes 60

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3284 7-11 NCBITaxon:10088 denotes mice
T3285 36-45 SO_EXT:wild_type_entity_or_quality denotes wild-type
T3286 46-50 GO_EXT:0008066 denotes GluR
T3287 46-52 PR_EXT:000008234 denotes GluR-B
T3288 53-59 SO_EXT:0001023 denotes allele
T3289 63-67 SO_EXT:0000704 denotes gene
T3290 77-81 GO_EXT:0008066 denotes GluR
T3291 77-83 PR_EXT:000008234 denotes GluR-B
T3292 83-86 CHEBI_GO_EXT:neomycin_or_neomycin_phosphotransferase denotes neo
T3293 87-93 SO_EXT:0001023 denotes allele
T3294 107-115 SO_EXT:0000188 denotes intronic
T3295 116-124 SO_EXT:biological_sequence denotes sequence
T3296 138-142 GO_EXT:0008066 denotes GluR
T3297 138-144 PR_EXT:000008234 denotes GluR-B
T3298 145-153 SO_EXT:0000932 denotes pre-mRNA
T3299 149-153 CHEBI_SO_EXT:mRNA denotes mRNA
T3300 154-161 SO_EXT:sequence_alteration_process denotes editing
T3301 169-170 CHEBI_SO_EXT:glutamine denotes Q
T3302 171-172 CHEBI_SO_EXT:arginine denotes R
T3303 181-189 SO_EXT:sequence_substitution_process denotes replaced
T3304 195-201 _FRAGMENT denotes floxed
T3305 209-213 SO_EXT:0000363 denotes gene
T3306 202-204 GO_PR_EXT:thymidine_kinase denotes TK
T3307 205-208 CHEBI_GO_EXT:neomycin_or_neomycin_phosphotransferase denotes neo
T3308 238-246 GO:0008380 denotes splicing
T3309 254-262 SO_EXT:sequence_alteration_process denotes modified
T3310 263-269 SO_EXT:0000188 denotes intron
T3311 295-305 GO:0010467 denotes expression
T3312 313-317 GO_EXT:0008066 denotes GluR
T3313 313-319 PR_EXT:000008234 denotes GluR-B
T3314 319-322 CHEBI_GO_EXT:neomycin_or_neomycin_phosphotransferase denotes neo
T3315 323-329 SO_EXT:0001023 denotes allele
R2175 T3305 T3304 _lexicallyChainedTo gene,floxed

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3195 7-11 NCBITaxon:10088 denotes mice
T3196 46-52 PR:000008234 denotes GluR-B
T3197 53-59 SO:0001023 denotes allele
T3198 63-67 SO:0000704 denotes gene
T3199 77-83 PR:000008234 denotes GluR-B
T3200 87-93 SO:0001023 denotes allele
T3201 107-115 SO:0000188 denotes intronic
T3202 138-144 PR:000008234 denotes GluR-B
T3203 145-153 SO:0000932 denotes pre-mRNA
T3204 195-201 _FRAGMENT denotes floxed
T3205 209-213 SO:0000363 denotes gene
T3206 238-246 GO:0008380 denotes splicing
T3207 263-269 SO:0000188 denotes intron
T3208 295-305 GO:0010467 denotes expression
T3209 313-319 PR:000008234 denotes GluR-B
T3210 323-329 SO:0001023 denotes allele
R2173 T3205 T3204 _lexicallyChainedTo gene,floxed