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PMC:1253828 / 9674-10376 JSONTXT

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Id Subject Object Predicate Lexical cue
T3025 407-408 SYM denotes ′
T3026 408-409 HYPH denotes -
T2931 269-290 NN denotes TTCCGATGTGCCAAGTGTGGC
T2936 0-3 DT denotes All
T2937 7-11 NNS denotes PCRs
T2938 4-6 NN denotes RT
T2939 6-7 HYPH denotes –
T2940 17-26 VBN denotes performed
T2941 12-16 VBD denotes were
T2942 27-31 IN denotes with
T2943 32-39 NNP denotes QIAGEN®
T2944 55-58 NN denotes Kit
T2945 40-47 NNP denotes OneStep
T2946 48-50 NN denotes RT
T2947 51-54 NN denotes PCR
T2948 50-51 HYPH denotes –
T2949 59-60 -LRB- denotes (
T2950 60-66 NNP denotes QIAGEN
T2951 66-67 -RRB- denotes )
T2952 68-77 VBG denotes according
T2953 78-80 IN denotes to
T2954 81-84 DT denotes the
T2955 85-97 NN denotes manufacturer
T2956 100-112 NNS denotes instructions
T2957 97-99 POS denotes 's
T2958 112-114 , denotes ,
T2959 114-119 VBG denotes using
T2960 120-123 CD denotes 150
T2961 124-127 CD denotes 200
T2962 123-124 SYM denotes –
T2963 128-130 NN denotes ng
T2964 154-157 NN denotes RNA
T2965 131-136 NN denotes DNase
T2966 137-138 NN denotes I
T2967 139-147 VBN denotes digested
T2968 138-139 HYPH denotes -
T2969 148-153 JJ denotes total
T2970 158-159 -LRB- denotes (
T2971 163-172 NN denotes isolation
T2972 159-162 NN denotes RNA
T2973 173-176 VBP denotes see
T2974 177-187 NN denotes microarray
T2975 188-196 NN denotes analysis
T2976 196-197 -RRB- denotes )
T2977 197-198 . denotes .
T2978 198-702 sentence denotes The reactions were carried out using the following primers: Csrp1: 5′-TTCCGATGTGCCAAGTGTGGC-3′; 5′-AGTAGAGAGTGGACATTCAGC-3′, hypoxanthin-guanin-phosphoribosyltransferase (Hprt): 5′-GCTGGTGAAAAGGACCTCTCG-3′; 5′-CCACAGGACTAGGACACCTGC-3′, Mtf1: 5′-GTGACTTTTGAGACTGTACTGAGTG-3′; 5′-CATGCCAAGAAACATTGAAGGTG-3′, Ndrg1: 5′-AGATACACAACAACGTGGAGG-3′; 5′-TGTGCGAGCGGCTTCGGGGGC-3′, Sepw1: 5′-TAGAGGCAGGGTCCTGAAAGC-3′; 5′-ACACCTGGAAACATGGCTGCC-3′, Slc39a10: 5′-GCTGTGGCTGGTAGTAAAAGC-3′; 5′-GTGGCATGGGATGTAAACAGC-3′.
T2979 199-202 DT denotes The
T2980 203-212 NNS denotes reactions
T2981 218-225 VBN denotes carried
T2982 213-217 VBD denotes were
T2983 226-229 RP denotes out
T2984 230-235 VBG denotes using
T2985 236-239 DT denotes the
T2986 250-257 NNS denotes primers
T2987 240-249 VBG denotes following
T2988 257-259 : denotes :
T2989 259-264 NN denotes Csrp1
T2990 264-266 : denotes :
T2991 266-267 CD denotes 5
T2992 267-268 SYM denotes ′
T2993 268-269 HYPH denotes -
T2994 290-291 HYPH denotes -
T2995 291-292 CD denotes 3
T2996 292-293 SYM denotes ′
T2997 293-294 : denotes ;
T2998 295-296 CD denotes 5
T2999 298-319 NN denotes AGTAGAGAGTGGACATTCAGC
T3000 296-297 SYM denotes ′
T3001 297-298 HYPH denotes -
T3002 319-320 HYPH denotes -
T3003 320-321 CD denotes 3
T3004 321-322 SYM denotes ′
T3005 322-324 , denotes ,
T3006 324-335 NN denotes hypoxanthin
T3007 343-368 NN denotes phosphoribosyltransferase
T3008 335-336 HYPH denotes -
T3009 336-342 NN denotes guanin
T3010 342-343 HYPH denotes -
T3011 369-370 -LRB- denotes (
T3012 370-374 NN denotes Hprt
T3013 374-375 -RRB- denotes )
T3014 375-377 : denotes :
T3015 377-378 CD denotes 5
T3016 380-401 NN denotes GCTGGTGAAAAGGACCTCTCG
T3017 378-379 SYM denotes ′
T3018 379-380 HYPH denotes -
T3019 401-402 HYPH denotes -
T3020 402-403 CD denotes 3
T3021 403-404 SYM denotes ′
T3022 404-405 : denotes ;
T3023 406-407 CD denotes 5
T3024 409-430 NN denotes CCACAGGACTAGGACACCTGC
T3027 430-431 HYPH denotes -
T3028 431-432 CD denotes 3
T3029 432-433 SYM denotes ′
T3030 433-435 , denotes ,
T3031 435-439 NN denotes Mtf1
T3032 439-441 : denotes :
T3033 441-442 CD denotes 5
T3034 444-469 NN denotes GTGACTTTTGAGACTGTACTGAGTG
T3035 442-443 SYM denotes ′
T3036 443-444 HYPH denotes -
T3037 469-470 HYPH denotes -
T3038 470-471 CD denotes 3
T3039 471-472 SYM denotes ′
T3040 472-473 : denotes ;
T3041 474-475 CD denotes 5
T3042 477-500 NN denotes CATGCCAAGAAACATTGAAGGTG
T3043 475-476 SYM denotes ′
T3044 476-477 HYPH denotes -
T3045 500-501 HYPH denotes -
T3046 501-502 CD denotes 3
T3047 502-503 SYM denotes ′
T3048 503-505 , denotes ,
T3049 505-510 NN denotes Ndrg1
T3050 510-512 : denotes :
T3051 512-513 CD denotes 5
T3052 515-536 NN denotes AGATACACAACAACGTGGAGG
T3053 513-514 SYM denotes ′
T3054 514-515 HYPH denotes -
T3055 536-537 HYPH denotes -
T3056 537-538 CD denotes 3
T3057 538-539 SYM denotes ′
T3058 539-540 : denotes ;
T3059 541-542 CD denotes 5
T3060 544-565 NN denotes TGTGCGAGCGGCTTCGGGGGC
T3061 542-543 SYM denotes ′
T3062 543-544 HYPH denotes -
T3063 565-566 HYPH denotes -
T3064 566-567 CD denotes 3
T3065 567-568 SYM denotes ′
T3066 568-570 , denotes ,
T3067 570-575 NN denotes Sepw1
T3068 575-577 : denotes :
T3069 577-578 CD denotes 5
T3070 580-601 NN denotes TAGAGGCAGGGTCCTGAAAGC
T3071 578-579 SYM denotes ′
T3072 579-580 HYPH denotes -
T3073 601-602 HYPH denotes -
T3074 602-603 CD denotes 3
T3075 603-604 SYM denotes ′
T3076 604-605 : denotes ;
T3077 606-607 CD denotes 5
T3078 609-630 NN denotes ACACCTGGAAACATGGCTGCC
T3079 607-608 SYM denotes ′
T3080 608-609 HYPH denotes -
T3081 630-631 HYPH denotes -
T3082 631-632 CD denotes 3
T3083 632-633 SYM denotes ′
T3084 633-635 , denotes ,
T3085 635-643 NN denotes Slc39a10
T3086 643-645 : denotes :
T3087 645-646 CD denotes 5
T3088 648-669 NN denotes GCTGTGGCTGGTAGTAAAAGC
T3089 646-647 SYM denotes ′
T3090 647-648 HYPH denotes -
T3091 669-670 HYPH denotes -
T3092 670-671 CD denotes 3
T3093 671-672 SYM denotes ′
T3094 672-673 : denotes ;
T3095 674-675 CD denotes 5
T3096 677-698 NN denotes GTGGCATGGGATGTAAACAGC
T3097 675-676 SYM denotes ′
T3098 676-677 HYPH denotes -
T3099 698-699 HYPH denotes -
T3100 699-700 CD denotes 3
T3101 700-701 SYM denotes ′
T3102 701-702 . denotes .
R1842 T2931 T2989 appos TTCCGATGTGCCAAGTGTGGC,Csrp1
R1845 T2936 T2937 det All,PCRs
R1846 T2937 T2940 nsubjpass PCRs,performed
R1847 T2938 T2937 compound RT,PCRs
R1848 T2939 T2937 punct –,PCRs
R1849 T2941 T2940 auxpass were,performed
R1850 T2942 T2940 prep with,performed
R1851 T2943 T2944 compound QIAGEN®,Kit
R1852 T2944 T2942 pobj Kit,with
R1853 T2945 T2944 compound OneStep,Kit
R1854 T2946 T2947 compound RT,PCR
R1855 T2947 T2944 compound PCR,Kit
R1856 T2948 T2947 punct –,PCR
R1857 T2949 T2950 punct (,QIAGEN
R1858 T2950 T2944 parataxis QIAGEN,Kit
R1859 T2951 T2950 punct ),QIAGEN
R1860 T2952 T2940 prep according,performed
R1861 T2953 T2952 prep to,according
R1862 T2954 T2955 det the,manufacturer
R1863 T2955 T2956 poss manufacturer,instructions
R1864 T2956 T2953 pobj instructions,to
R1865 T2957 T2955 case 's,manufacturer
R1866 T2958 T2940 punct ", ",performed
R1867 T2959 T2940 advcl using,performed
R1868 T2960 T2961 quantmod 150,200
R1869 T2961 T2963 nummod 200,ng
R1870 T2962 T2961 punct –,200
R1871 T2963 T2964 nmod ng,RNA
R1872 T2964 T2959 dobj RNA,using
R1873 T2965 T2966 compound DNase,I
R1874 T2966 T2967 npadvmod I,digested
R1875 T2967 T2964 amod digested,RNA
R1876 T2968 T2967 punct -,digested
R1877 T2969 T2964 amod total,RNA
R1878 T2970 T2971 punct (,isolation
R1879 T2971 T2959 parataxis isolation,using
R1880 T2972 T2971 compound RNA,isolation
R1881 T2973 T2971 advcl see,isolation
R1882 T2974 T2975 compound microarray,analysis
R1883 T2975 T2973 dobj analysis,see
R1884 T2976 T2971 punct ),isolation
R1885 T2977 T2940 punct .,performed
R1886 T2979 T2980 det The,reactions
R1887 T2980 T2981 nsubjpass reactions,carried
R1888 T2982 T2981 auxpass were,carried
R1889 T2983 T2981 prt out,carried
R1890 T2984 T2981 advcl using,carried
R1891 T2985 T2986 det the,primers
R1892 T2986 T2984 dobj primers,using
R1893 T2987 T2986 amod following,primers
R1894 T2988 T2986 punct : ,primers
R1895 T2989 T2986 appos Csrp1,primers
R1896 T2990 T2989 punct : ,Csrp1
R1897 T2991 T2931 nummod 5,TTCCGATGTGCCAAGTGTGGC
R1898 T2992 T2991 punct ′,5
R1899 T2993 T2931 punct -,TTCCGATGTGCCAAGTGTGGC
R1900 T2994 T2931 punct -,TTCCGATGTGCCAAGTGTGGC
R1901 T2995 T2931 nummod 3,TTCCGATGTGCCAAGTGTGGC
R1902 T2996 T2931 punct ′,TTCCGATGTGCCAAGTGTGGC
R1903 T2997 T2931 punct ;,TTCCGATGTGCCAAGTGTGGC
R1904 T2998 T2999 nummod 5,AGTAGAGAGTGGACATTCAGC
R1905 T2999 T2931 appos AGTAGAGAGTGGACATTCAGC,TTCCGATGTGCCAAGTGTGGC
R1906 T3000 T2998 punct ′,5
R1907 T3001 T2999 punct -,AGTAGAGAGTGGACATTCAGC
R1908 T3002 T2999 punct -,AGTAGAGAGTGGACATTCAGC
R1909 T3003 T2999 nummod 3,AGTAGAGAGTGGACATTCAGC
R1910 T3004 T2999 punct ′,AGTAGAGAGTGGACATTCAGC
R1911 T3005 T2989 punct ", ",Csrp1
R1912 T3006 T3007 compound hypoxanthin,phosphoribosyltransferase
R1913 T3007 T2989 appos phosphoribosyltransferase,Csrp1
R1914 T3008 T3007 punct -,phosphoribosyltransferase
R1915 T3009 T3007 compound guanin,phosphoribosyltransferase
R1916 T3010 T3007 punct -,phosphoribosyltransferase
R1917 T3011 T3007 punct (,phosphoribosyltransferase
R1918 T3012 T3007 appos Hprt,phosphoribosyltransferase
R1919 T3013 T3007 punct ),phosphoribosyltransferase
R1920 T3014 T3007 punct : ,phosphoribosyltransferase
R1921 T3015 T3016 nummod 5,GCTGGTGAAAAGGACCTCTCG
R1922 T3016 T3007 appos GCTGGTGAAAAGGACCTCTCG,phosphoribosyltransferase
R1923 T3017 T3015 punct ′,5
R1924 T3018 T3016 punct -,GCTGGTGAAAAGGACCTCTCG
R1925 T3019 T3016 punct -,GCTGGTGAAAAGGACCTCTCG
R1926 T3020 T3016 nummod 3,GCTGGTGAAAAGGACCTCTCG
R1927 T3021 T3016 punct ′,GCTGGTGAAAAGGACCTCTCG
R1928 T3022 T3016 punct ;,GCTGGTGAAAAGGACCTCTCG
R1929 T3023 T3024 nummod 5,CCACAGGACTAGGACACCTGC
R1930 T3024 T3016 appos CCACAGGACTAGGACACCTGC,GCTGGTGAAAAGGACCTCTCG
R1931 T3025 T3023 punct ′,5
R1932 T3026 T3024 punct -,CCACAGGACTAGGACACCTGC
R1933 T3027 T3024 punct -,CCACAGGACTAGGACACCTGC
R1934 T3028 T3024 nummod 3,CCACAGGACTAGGACACCTGC
R1935 T3029 T3024 punct ′,CCACAGGACTAGGACACCTGC
R1936 T3030 T2989 punct ", ",Csrp1
R1937 T3031 T2989 appos Mtf1,Csrp1
R1938 T3032 T3031 punct : ,Mtf1
R1939 T3033 T3034 nummod 5,GTGACTTTTGAGACTGTACTGAGTG
R1940 T3034 T3031 appos GTGACTTTTGAGACTGTACTGAGTG,Mtf1
R1941 T3035 T3033 punct ′,5
R1942 T3036 T3034 punct -,GTGACTTTTGAGACTGTACTGAGTG
R1943 T3037 T3034 punct -,GTGACTTTTGAGACTGTACTGAGTG
R1944 T3038 T3034 nummod 3,GTGACTTTTGAGACTGTACTGAGTG
R1945 T3039 T3034 punct ′,GTGACTTTTGAGACTGTACTGAGTG
R1946 T3040 T3034 punct ;,GTGACTTTTGAGACTGTACTGAGTG
R1947 T3041 T3042 nummod 5,CATGCCAAGAAACATTGAAGGTG
R1948 T3042 T3034 appos CATGCCAAGAAACATTGAAGGTG,GTGACTTTTGAGACTGTACTGAGTG
R1949 T3043 T3041 punct ′,5
R1950 T3044 T3042 punct -,CATGCCAAGAAACATTGAAGGTG
R1951 T3045 T3042 punct -,CATGCCAAGAAACATTGAAGGTG
R1952 T3046 T3042 nummod 3,CATGCCAAGAAACATTGAAGGTG
R1953 T3047 T3042 punct ′,CATGCCAAGAAACATTGAAGGTG
R1954 T3048 T2989 punct ", ",Csrp1
R1955 T3049 T2989 appos Ndrg1,Csrp1
R1956 T3050 T3049 punct : ,Ndrg1
R1957 T3051 T3052 nummod 5,AGATACACAACAACGTGGAGG
R1958 T3052 T3049 appos AGATACACAACAACGTGGAGG,Ndrg1
R1959 T3053 T3051 punct ′,5
R1960 T3054 T3052 punct -,AGATACACAACAACGTGGAGG
R1961 T3055 T3052 punct -,AGATACACAACAACGTGGAGG
R1962 T3056 T3052 nummod 3,AGATACACAACAACGTGGAGG
R1963 T3057 T3052 punct ′,AGATACACAACAACGTGGAGG
R1964 T3058 T3052 punct ;,AGATACACAACAACGTGGAGG
R1965 T3059 T3060 nummod 5,TGTGCGAGCGGCTTCGGGGGC
R1966 T3060 T3052 appos TGTGCGAGCGGCTTCGGGGGC,AGATACACAACAACGTGGAGG
R1967 T3061 T3059 punct ′,5
R1968 T3062 T3060 punct -,TGTGCGAGCGGCTTCGGGGGC
R1969 T3063 T3060 punct -,TGTGCGAGCGGCTTCGGGGGC
R1970 T3064 T3060 nummod 3,TGTGCGAGCGGCTTCGGGGGC
R1971 T3065 T3060 punct ′,TGTGCGAGCGGCTTCGGGGGC
R1972 T3066 T2989 punct ", ",Csrp1
R1973 T3067 T2989 appos Sepw1,Csrp1
R1974 T3068 T3067 punct : ,Sepw1
R1975 T3069 T3070 nummod 5,TAGAGGCAGGGTCCTGAAAGC
R1976 T3070 T3067 appos TAGAGGCAGGGTCCTGAAAGC,Sepw1
R1977 T3071 T3069 punct ′,5
R1978 T3072 T3070 punct -,TAGAGGCAGGGTCCTGAAAGC
R1979 T3073 T3070 punct -,TAGAGGCAGGGTCCTGAAAGC
R1980 T3074 T3070 nummod 3,TAGAGGCAGGGTCCTGAAAGC
R1981 T3075 T3070 punct ′,TAGAGGCAGGGTCCTGAAAGC
R1982 T3076 T3070 punct ;,TAGAGGCAGGGTCCTGAAAGC
R1983 T3077 T3078 nummod 5,ACACCTGGAAACATGGCTGCC
R1984 T3078 T3070 appos ACACCTGGAAACATGGCTGCC,TAGAGGCAGGGTCCTGAAAGC
R1985 T3079 T3077 punct ′,5
R1986 T3080 T3078 punct -,ACACCTGGAAACATGGCTGCC
R1987 T3081 T3078 punct -,ACACCTGGAAACATGGCTGCC
R1988 T3082 T3078 nummod 3,ACACCTGGAAACATGGCTGCC
R1989 T3083 T3078 punct ′,ACACCTGGAAACATGGCTGCC
R1990 T3084 T2989 punct ", ",Csrp1
R1991 T3085 T2989 appos Slc39a10,Csrp1
R1992 T3086 T3085 punct : ,Slc39a10
R1993 T3087 T3088 nummod 5,GCTGTGGCTGGTAGTAAAAGC
R1994 T3088 T3085 appos GCTGTGGCTGGTAGTAAAAGC,Slc39a10
R1995 T3089 T3087 punct ′,5
R1996 T3090 T3088 punct -,GCTGTGGCTGGTAGTAAAAGC
R1997 T3091 T3088 punct -,GCTGTGGCTGGTAGTAAAAGC
R1998 T3092 T3088 nummod 3,GCTGTGGCTGGTAGTAAAAGC
R1999 T3093 T3088 punct ′,GCTGTGGCTGGTAGTAAAAGC
R2000 T3094 T3088 punct ;,GCTGTGGCTGGTAGTAAAAGC
R2001 T3095 T3096 nummod 5,GTGGCATGGGATGTAAACAGC
R2002 T3096 T3088 appos GTGGCATGGGATGTAAACAGC,GCTGTGGCTGGTAGTAAAAGC
R2003 T3097 T3095 punct ′,5
R2004 T3098 T3096 punct -,GTGGCATGGGATGTAAACAGC
R2005 T3099 T3096 punct -,GTGGCATGGGATGTAAACAGC
R2006 T3100 T3096 nummod 3,GTGGCATGGGATGTAAACAGC
R2007 T3101 T3096 punct ′,GTGGCATGGGATGTAAACAGC
R2008 T3102 T2981 punct .,carried

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3103 250-257 SO:0000112 denotes primers
T3104 259-264 PR:000005958 denotes Csrp1
T3105 324-335 CHEBI:17368 denotes hypoxanthin
T3106 435-439 PR:000010717 denotes Mtf1
T3107 505-510 PR:000011059 denotes Ndrg1
T3108 570-575 PR:000014662 denotes Sepw1
T3109 635-643 PR:000015124 denotes Slc39a10

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3111 4-6 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T3112 48-50 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T3113 131-138 GO_PR_EXT:deoxyribonuclease_I denotes DNase I
T3114 154-157 CHEBI_SO_EXT:RNA denotes RNA
T3115 159-162 CHEBI_SO_EXT:RNA denotes RNA
T3116 250-257 SO_EXT:0000112 denotes primers
T3117 259-264 PR_EXT:000005958 denotes Csrp1
T3118 324-335 CHEBI:17368 denotes hypoxanthin
T3119 324-368 GO_PR_EXT:hypoxanthine_guanine_phosphoribosyltransferase denotes hypoxanthin-guanin-phosphoribosyltransferase
T3120 336-342 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes guanin
T3121 370-374 GO_PR_EXT:hypoxanthine_guanine_phosphoribosyltransferase denotes Hprt
T3122 435-439 PR_EXT:000010717 denotes Mtf1
T3123 505-510 PR_EXT:000011059 denotes Ndrg1
T3124 570-575 PR_EXT:000014662 denotes Sepw1
T3125 635-643 PR_EXT:000015124 denotes Slc39a10