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PMC:1253828 / 9667-10376 JSONTXT

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Id Subject Object Predicate Lexical cue
T3025 414-415 SYM denotes ′
T3026 415-416 HYPH denotes -
T2931 276-297 NN denotes TTCCGATGTGCCAAGTGTGGC
T2932 0-2 NN denotes RT
T2933 3-6 NN denotes PCR
T2934 2-3 HYPH denotes –
T2935 6-205 sentence denotes All RT–PCRs were performed with QIAGEN® OneStep RT–PCR Kit (QIAGEN) according to the manufacturer's instructions, using 150–200 ng DNase I-digested total RNA (RNA isolation see microarray analysis).
T2936 7-10 DT denotes All
T2937 14-18 NNS denotes PCRs
T2938 11-13 NN denotes RT
T2939 13-14 HYPH denotes –
T2940 24-33 VBN denotes performed
T2941 19-23 VBD denotes were
T2942 34-38 IN denotes with
T2943 39-46 NNP denotes QIAGEN®
T2944 62-65 NN denotes Kit
T2945 47-54 NNP denotes OneStep
T2946 55-57 NN denotes RT
T2947 58-61 NN denotes PCR
T2948 57-58 HYPH denotes –
T2949 66-67 -LRB- denotes (
T2950 67-73 NNP denotes QIAGEN
T2951 73-74 -RRB- denotes )
T2952 75-84 VBG denotes according
T2953 85-87 IN denotes to
T2954 88-91 DT denotes the
T2955 92-104 NN denotes manufacturer
T2956 107-119 NNS denotes instructions
T2957 104-106 POS denotes 's
T2958 119-121 , denotes ,
T2959 121-126 VBG denotes using
T2960 127-130 CD denotes 150
T2961 131-134 CD denotes 200
T2962 130-131 SYM denotes –
T2963 135-137 NN denotes ng
T2964 161-164 NN denotes RNA
T2965 138-143 NN denotes DNase
T2966 144-145 NN denotes I
T2967 146-154 VBN denotes digested
T2968 145-146 HYPH denotes -
T2969 155-160 JJ denotes total
T2970 165-166 -LRB- denotes (
T2971 170-179 NN denotes isolation
T2972 166-169 NN denotes RNA
T2973 180-183 VBP denotes see
T2974 184-194 NN denotes microarray
T2975 195-203 NN denotes analysis
T2976 203-204 -RRB- denotes )
T2977 204-205 . denotes .
T2978 205-709 sentence denotes The reactions were carried out using the following primers: Csrp1: 5′-TTCCGATGTGCCAAGTGTGGC-3′; 5′-AGTAGAGAGTGGACATTCAGC-3′, hypoxanthin-guanin-phosphoribosyltransferase (Hprt): 5′-GCTGGTGAAAAGGACCTCTCG-3′; 5′-CCACAGGACTAGGACACCTGC-3′, Mtf1: 5′-GTGACTTTTGAGACTGTACTGAGTG-3′; 5′-CATGCCAAGAAACATTGAAGGTG-3′, Ndrg1: 5′-AGATACACAACAACGTGGAGG-3′; 5′-TGTGCGAGCGGCTTCGGGGGC-3′, Sepw1: 5′-TAGAGGCAGGGTCCTGAAAGC-3′; 5′-ACACCTGGAAACATGGCTGCC-3′, Slc39a10: 5′-GCTGTGGCTGGTAGTAAAAGC-3′; 5′-GTGGCATGGGATGTAAACAGC-3′.
T2979 206-209 DT denotes The
T2980 210-219 NNS denotes reactions
T2981 225-232 VBN denotes carried
T2982 220-224 VBD denotes were
T2983 233-236 RP denotes out
T2984 237-242 VBG denotes using
T2985 243-246 DT denotes the
T2986 257-264 NNS denotes primers
T2987 247-256 VBG denotes following
T2988 264-266 : denotes :
T2989 266-271 NN denotes Csrp1
T2990 271-273 : denotes :
T2991 273-274 CD denotes 5
T2992 274-275 SYM denotes ′
T2993 275-276 HYPH denotes -
T2994 297-298 HYPH denotes -
T2995 298-299 CD denotes 3
T2996 299-300 SYM denotes ′
T2997 300-301 : denotes ;
T2998 302-303 CD denotes 5
T2999 305-326 NN denotes AGTAGAGAGTGGACATTCAGC
T3000 303-304 SYM denotes ′
T3001 304-305 HYPH denotes -
T3002 326-327 HYPH denotes -
T3003 327-328 CD denotes 3
T3004 328-329 SYM denotes ′
T3005 329-331 , denotes ,
T3006 331-342 NN denotes hypoxanthin
T3007 350-375 NN denotes phosphoribosyltransferase
T3008 342-343 HYPH denotes -
T3009 343-349 NN denotes guanin
T3010 349-350 HYPH denotes -
T3011 376-377 -LRB- denotes (
T3012 377-381 NN denotes Hprt
T3013 381-382 -RRB- denotes )
T3014 382-384 : denotes :
T3015 384-385 CD denotes 5
T3016 387-408 NN denotes GCTGGTGAAAAGGACCTCTCG
T3017 385-386 SYM denotes ′
T3018 386-387 HYPH denotes -
T3019 408-409 HYPH denotes -
T3020 409-410 CD denotes 3
T3021 410-411 SYM denotes ′
T3022 411-412 : denotes ;
T3023 413-414 CD denotes 5
T3024 416-437 NN denotes CCACAGGACTAGGACACCTGC
T3027 437-438 HYPH denotes -
T3028 438-439 CD denotes 3
T3029 439-440 SYM denotes ′
T3030 440-442 , denotes ,
T3031 442-446 NN denotes Mtf1
T3032 446-448 : denotes :
T3033 448-449 CD denotes 5
T3034 451-476 NN denotes GTGACTTTTGAGACTGTACTGAGTG
T3035 449-450 SYM denotes ′
T3036 450-451 HYPH denotes -
T3037 476-477 HYPH denotes -
T3038 477-478 CD denotes 3
T3039 478-479 SYM denotes ′
T3040 479-480 : denotes ;
T3041 481-482 CD denotes 5
T3042 484-507 NN denotes CATGCCAAGAAACATTGAAGGTG
T3043 482-483 SYM denotes ′
T3044 483-484 HYPH denotes -
T3045 507-508 HYPH denotes -
T3046 508-509 CD denotes 3
T3047 509-510 SYM denotes ′
T3048 510-512 , denotes ,
T3049 512-517 NN denotes Ndrg1
T3050 517-519 : denotes :
T3051 519-520 CD denotes 5
T3052 522-543 NN denotes AGATACACAACAACGTGGAGG
T3053 520-521 SYM denotes ′
T3054 521-522 HYPH denotes -
T3055 543-544 HYPH denotes -
T3056 544-545 CD denotes 3
T3057 545-546 SYM denotes ′
T3058 546-547 : denotes ;
T3059 548-549 CD denotes 5
T3060 551-572 NN denotes TGTGCGAGCGGCTTCGGGGGC
T3061 549-550 SYM denotes ′
T3062 550-551 HYPH denotes -
T3063 572-573 HYPH denotes -
T3064 573-574 CD denotes 3
T3065 574-575 SYM denotes ′
T3066 575-577 , denotes ,
T3067 577-582 NN denotes Sepw1
T3068 582-584 : denotes :
T3069 584-585 CD denotes 5
T3070 587-608 NN denotes TAGAGGCAGGGTCCTGAAAGC
T3071 585-586 SYM denotes ′
T3072 586-587 HYPH denotes -
T3073 608-609 HYPH denotes -
T3074 609-610 CD denotes 3
T3075 610-611 SYM denotes ′
T3076 611-612 : denotes ;
T3077 613-614 CD denotes 5
T3078 616-637 NN denotes ACACCTGGAAACATGGCTGCC
T3079 614-615 SYM denotes ′
T3080 615-616 HYPH denotes -
T3081 637-638 HYPH denotes -
T3082 638-639 CD denotes 3
T3083 639-640 SYM denotes ′
T3084 640-642 , denotes ,
T3085 642-650 NN denotes Slc39a10
T3086 650-652 : denotes :
T3087 652-653 CD denotes 5
T3088 655-676 NN denotes GCTGTGGCTGGTAGTAAAAGC
T3089 653-654 SYM denotes ′
T3090 654-655 HYPH denotes -
T3091 676-677 HYPH denotes -
T3092 677-678 CD denotes 3
T3093 678-679 SYM denotes ′
T3094 679-680 : denotes ;
T3095 681-682 CD denotes 5
T3096 684-705 NN denotes GTGGCATGGGATGTAAACAGC
T3097 682-683 SYM denotes ′
T3098 683-684 HYPH denotes -
T3099 705-706 HYPH denotes -
T3100 706-707 CD denotes 3
T3101 707-708 SYM denotes ′
T3102 708-709 . denotes .
R1842 T2931 T2989 appos TTCCGATGTGCCAAGTGTGGC,Csrp1
R1843 T2932 T2933 compound RT,PCR
R1844 T2934 T2933 punct –,PCR
R1845 T2936 T2937 det All,PCRs
R1846 T2937 T2940 nsubjpass PCRs,performed
R1847 T2938 T2937 compound RT,PCRs
R1848 T2939 T2937 punct –,PCRs
R1849 T2941 T2940 auxpass were,performed
R1850 T2942 T2940 prep with,performed
R1851 T2943 T2944 compound QIAGEN®,Kit
R1852 T2944 T2942 pobj Kit,with
R1853 T2945 T2944 compound OneStep,Kit
R1854 T2946 T2947 compound RT,PCR
R1855 T2947 T2944 compound PCR,Kit
R1856 T2948 T2947 punct –,PCR
R1857 T2949 T2950 punct (,QIAGEN
R1858 T2950 T2944 parataxis QIAGEN,Kit
R1859 T2951 T2950 punct ),QIAGEN
R1860 T2952 T2940 prep according,performed
R1861 T2953 T2952 prep to,according
R1862 T2954 T2955 det the,manufacturer
R1863 T2955 T2956 poss manufacturer,instructions
R1864 T2956 T2953 pobj instructions,to
R1865 T2957 T2955 case 's,manufacturer
R1866 T2958 T2940 punct ", ",performed
R1867 T2959 T2940 advcl using,performed
R1868 T2960 T2961 quantmod 150,200
R1869 T2961 T2963 nummod 200,ng
R1870 T2962 T2961 punct –,200
R1871 T2963 T2964 nmod ng,RNA
R1872 T2964 T2959 dobj RNA,using
R1873 T2965 T2966 compound DNase,I
R1874 T2966 T2967 npadvmod I,digested
R1875 T2967 T2964 amod digested,RNA
R1876 T2968 T2967 punct -,digested
R1877 T2969 T2964 amod total,RNA
R1878 T2970 T2971 punct (,isolation
R1879 T2971 T2959 parataxis isolation,using
R1880 T2972 T2971 compound RNA,isolation
R1881 T2973 T2971 advcl see,isolation
R1882 T2974 T2975 compound microarray,analysis
R1883 T2975 T2973 dobj analysis,see
R1884 T2976 T2971 punct ),isolation
R1885 T2977 T2940 punct .,performed
R1886 T2979 T2980 det The,reactions
R1887 T2980 T2981 nsubjpass reactions,carried
R1888 T2982 T2981 auxpass were,carried
R1889 T2983 T2981 prt out,carried
R1890 T2984 T2981 advcl using,carried
R1891 T2985 T2986 det the,primers
R1892 T2986 T2984 dobj primers,using
R1893 T2987 T2986 amod following,primers
R1894 T2988 T2986 punct : ,primers
R1895 T2989 T2986 appos Csrp1,primers
R1896 T2990 T2989 punct : ,Csrp1
R1897 T2991 T2931 nummod 5,TTCCGATGTGCCAAGTGTGGC
R1898 T2992 T2991 punct ′,5
R1899 T2993 T2931 punct -,TTCCGATGTGCCAAGTGTGGC
R1900 T2994 T2931 punct -,TTCCGATGTGCCAAGTGTGGC
R1901 T2995 T2931 nummod 3,TTCCGATGTGCCAAGTGTGGC
R1902 T2996 T2931 punct ′,TTCCGATGTGCCAAGTGTGGC
R1903 T2997 T2931 punct ;,TTCCGATGTGCCAAGTGTGGC
R1904 T2998 T2999 nummod 5,AGTAGAGAGTGGACATTCAGC
R1905 T2999 T2931 appos AGTAGAGAGTGGACATTCAGC,TTCCGATGTGCCAAGTGTGGC
R1906 T3000 T2998 punct ′,5
R1907 T3001 T2999 punct -,AGTAGAGAGTGGACATTCAGC
R1908 T3002 T2999 punct -,AGTAGAGAGTGGACATTCAGC
R1909 T3003 T2999 nummod 3,AGTAGAGAGTGGACATTCAGC
R1910 T3004 T2999 punct ′,AGTAGAGAGTGGACATTCAGC
R1911 T3005 T2989 punct ", ",Csrp1
R1912 T3006 T3007 compound hypoxanthin,phosphoribosyltransferase
R1913 T3007 T2989 appos phosphoribosyltransferase,Csrp1
R1914 T3008 T3007 punct -,phosphoribosyltransferase
R1915 T3009 T3007 compound guanin,phosphoribosyltransferase
R1916 T3010 T3007 punct -,phosphoribosyltransferase
R1917 T3011 T3007 punct (,phosphoribosyltransferase
R1918 T3012 T3007 appos Hprt,phosphoribosyltransferase
R1919 T3013 T3007 punct ),phosphoribosyltransferase
R1920 T3014 T3007 punct : ,phosphoribosyltransferase
R1921 T3015 T3016 nummod 5,GCTGGTGAAAAGGACCTCTCG
R1922 T3016 T3007 appos GCTGGTGAAAAGGACCTCTCG,phosphoribosyltransferase
R1923 T3017 T3015 punct ′,5
R1924 T3018 T3016 punct -,GCTGGTGAAAAGGACCTCTCG
R1925 T3019 T3016 punct -,GCTGGTGAAAAGGACCTCTCG
R1926 T3020 T3016 nummod 3,GCTGGTGAAAAGGACCTCTCG
R1927 T3021 T3016 punct ′,GCTGGTGAAAAGGACCTCTCG
R1928 T3022 T3016 punct ;,GCTGGTGAAAAGGACCTCTCG
R1929 T3023 T3024 nummod 5,CCACAGGACTAGGACACCTGC
R1930 T3024 T3016 appos CCACAGGACTAGGACACCTGC,GCTGGTGAAAAGGACCTCTCG
R1931 T3025 T3023 punct ′,5
R1932 T3026 T3024 punct -,CCACAGGACTAGGACACCTGC
R1933 T3027 T3024 punct -,CCACAGGACTAGGACACCTGC
R1934 T3028 T3024 nummod 3,CCACAGGACTAGGACACCTGC
R1935 T3029 T3024 punct ′,CCACAGGACTAGGACACCTGC
R1936 T3030 T2989 punct ", ",Csrp1
R1937 T3031 T2989 appos Mtf1,Csrp1
R1938 T3032 T3031 punct : ,Mtf1
R1939 T3033 T3034 nummod 5,GTGACTTTTGAGACTGTACTGAGTG
R1940 T3034 T3031 appos GTGACTTTTGAGACTGTACTGAGTG,Mtf1
R1941 T3035 T3033 punct ′,5
R1942 T3036 T3034 punct -,GTGACTTTTGAGACTGTACTGAGTG
R1943 T3037 T3034 punct -,GTGACTTTTGAGACTGTACTGAGTG
R1944 T3038 T3034 nummod 3,GTGACTTTTGAGACTGTACTGAGTG
R1945 T3039 T3034 punct ′,GTGACTTTTGAGACTGTACTGAGTG
R1946 T3040 T3034 punct ;,GTGACTTTTGAGACTGTACTGAGTG
R1947 T3041 T3042 nummod 5,CATGCCAAGAAACATTGAAGGTG
R1948 T3042 T3034 appos CATGCCAAGAAACATTGAAGGTG,GTGACTTTTGAGACTGTACTGAGTG
R1949 T3043 T3041 punct ′,5
R1950 T3044 T3042 punct -,CATGCCAAGAAACATTGAAGGTG
R1951 T3045 T3042 punct -,CATGCCAAGAAACATTGAAGGTG
R1952 T3046 T3042 nummod 3,CATGCCAAGAAACATTGAAGGTG
R1953 T3047 T3042 punct ′,CATGCCAAGAAACATTGAAGGTG
R1954 T3048 T2989 punct ", ",Csrp1
R1955 T3049 T2989 appos Ndrg1,Csrp1
R1956 T3050 T3049 punct : ,Ndrg1
R1957 T3051 T3052 nummod 5,AGATACACAACAACGTGGAGG
R1958 T3052 T3049 appos AGATACACAACAACGTGGAGG,Ndrg1
R1959 T3053 T3051 punct ′,5
R1960 T3054 T3052 punct -,AGATACACAACAACGTGGAGG
R1961 T3055 T3052 punct -,AGATACACAACAACGTGGAGG
R1962 T3056 T3052 nummod 3,AGATACACAACAACGTGGAGG
R1963 T3057 T3052 punct ′,AGATACACAACAACGTGGAGG
R1964 T3058 T3052 punct ;,AGATACACAACAACGTGGAGG
R1965 T3059 T3060 nummod 5,TGTGCGAGCGGCTTCGGGGGC
R1966 T3060 T3052 appos TGTGCGAGCGGCTTCGGGGGC,AGATACACAACAACGTGGAGG
R1967 T3061 T3059 punct ′,5
R1968 T3062 T3060 punct -,TGTGCGAGCGGCTTCGGGGGC
R1969 T3063 T3060 punct -,TGTGCGAGCGGCTTCGGGGGC
R1970 T3064 T3060 nummod 3,TGTGCGAGCGGCTTCGGGGGC
R1971 T3065 T3060 punct ′,TGTGCGAGCGGCTTCGGGGGC
R1972 T3066 T2989 punct ", ",Csrp1
R1973 T3067 T2989 appos Sepw1,Csrp1
R1974 T3068 T3067 punct : ,Sepw1
R1975 T3069 T3070 nummod 5,TAGAGGCAGGGTCCTGAAAGC
R1976 T3070 T3067 appos TAGAGGCAGGGTCCTGAAAGC,Sepw1
R1977 T3071 T3069 punct ′,5
R1978 T3072 T3070 punct -,TAGAGGCAGGGTCCTGAAAGC
R1979 T3073 T3070 punct -,TAGAGGCAGGGTCCTGAAAGC
R1980 T3074 T3070 nummod 3,TAGAGGCAGGGTCCTGAAAGC
R1981 T3075 T3070 punct ′,TAGAGGCAGGGTCCTGAAAGC
R1982 T3076 T3070 punct ;,TAGAGGCAGGGTCCTGAAAGC
R1983 T3077 T3078 nummod 5,ACACCTGGAAACATGGCTGCC
R1984 T3078 T3070 appos ACACCTGGAAACATGGCTGCC,TAGAGGCAGGGTCCTGAAAGC
R1985 T3079 T3077 punct ′,5
R1986 T3080 T3078 punct -,ACACCTGGAAACATGGCTGCC
R1987 T3081 T3078 punct -,ACACCTGGAAACATGGCTGCC
R1988 T3082 T3078 nummod 3,ACACCTGGAAACATGGCTGCC
R1989 T3083 T3078 punct ′,ACACCTGGAAACATGGCTGCC
R1990 T3084 T2989 punct ", ",Csrp1
R1991 T3085 T2989 appos Slc39a10,Csrp1
R1992 T3086 T3085 punct : ,Slc39a10
R1993 T3087 T3088 nummod 5,GCTGTGGCTGGTAGTAAAAGC
R1994 T3088 T3085 appos GCTGTGGCTGGTAGTAAAAGC,Slc39a10
R1995 T3089 T3087 punct ′,5
R1996 T3090 T3088 punct -,GCTGTGGCTGGTAGTAAAAGC
R1997 T3091 T3088 punct -,GCTGTGGCTGGTAGTAAAAGC
R1998 T3092 T3088 nummod 3,GCTGTGGCTGGTAGTAAAAGC
R1999 T3093 T3088 punct ′,GCTGTGGCTGGTAGTAAAAGC
R2000 T3094 T3088 punct ;,GCTGTGGCTGGTAGTAAAAGC
R2001 T3095 T3096 nummod 5,GTGGCATGGGATGTAAACAGC
R2002 T3096 T3088 appos GTGGCATGGGATGTAAACAGC,GCTGTGGCTGGTAGTAAAAGC
R2003 T3097 T3095 punct ′,5
R2004 T3098 T3096 punct -,GTGGCATGGGATGTAAACAGC
R2005 T3099 T3096 punct -,GTGGCATGGGATGTAAACAGC
R2006 T3100 T3096 nummod 3,GTGGCATGGGATGTAAACAGC
R2007 T3101 T3096 punct ′,GTGGCATGGGATGTAAACAGC
R2008 T3102 T2981 punct .,carried

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3103 257-264 SO:0000112 denotes primers
T3104 266-271 PR:000005958 denotes Csrp1
T3105 331-342 CHEBI:17368 denotes hypoxanthin
T3106 442-446 PR:000010717 denotes Mtf1
T3107 512-517 PR:000011059 denotes Ndrg1
T3108 577-582 PR:000014662 denotes Sepw1
T3109 642-650 PR:000015124 denotes Slc39a10

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3110 0-2 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T3111 11-13 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T3112 55-57 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T3113 138-145 GO_PR_EXT:deoxyribonuclease_I denotes DNase I
T3114 161-164 CHEBI_SO_EXT:RNA denotes RNA
T3115 166-169 CHEBI_SO_EXT:RNA denotes RNA
T3116 257-264 SO_EXT:0000112 denotes primers
T3117 266-271 PR_EXT:000005958 denotes Csrp1
T3118 331-342 CHEBI:17368 denotes hypoxanthin
T3119 331-375 GO_PR_EXT:hypoxanthine_guanine_phosphoribosyltransferase denotes hypoxanthin-guanin-phosphoribosyltransferase
T3120 343-349 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes guanin
T3121 377-381 GO_PR_EXT:hypoxanthine_guanine_phosphoribosyltransferase denotes Hprt
T3122 442-446 PR_EXT:000010717 denotes Mtf1
T3123 512-517 PR_EXT:000011059 denotes Ndrg1
T3124 577-582 PR_EXT:000014662 denotes Sepw1
T3125 642-650 PR_EXT:000015124 denotes Slc39a10