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PMC:1253828 / 8795-9402 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T2750 0-4 NNS denotes Data
T2751 5-13 NN denotes analysis
T2752 18-27 VBN denotes performed
T2753 14-17 VBD denotes was
T2754 28-32 IN denotes with
T2755 33-43 NNP denotes GeneSpring
T2756 48-56 NN denotes software
T2757 44-47 CD denotes 6.1
T2758 57-58 -LRB- denotes (
T2759 66-74 NNP denotes Genetics
T2760 58-65 NNP denotes Silicon
T2761 74-75 -RRB- denotes )
T2762 75-77 , denotes ,
T2763 77-85 VBG denotes applying
T2764 86-87 DT denotes a
T2765 101-106 NN denotes level
T2766 88-100 NN denotes significance
T2767 107-108 NN denotes P
T2768 111-115 CD denotes 0.05
T2769 109-110 SYM denotes ≤
T2770 115-116 . denotes .
T2771 116-233 sentence denotes Furthermore, multiple testing correction was used in addition to obtain cadmium-responsive, MTF-1-independent genes.
T2772 117-128 RB denotes Furthermore
T2773 162-166 VBN denotes used
T2774 128-130 , denotes ,
T2775 130-138 JJ denotes multiple
T2776 147-157 NN denotes correction
T2777 139-146 NN denotes testing
T2778 158-161 VBD denotes was
T2779 167-169 IN denotes in
T2780 170-178 NN denotes addition
T2781 179-181 TO denotes to
T2782 182-188 VB denotes obtain
T2783 189-196 NN denotes cadmium
T2784 197-207 JJ denotes responsive
T2785 196-197 HYPH denotes -
T2786 227-232 NNS denotes genes
T2787 207-209 , denotes ,
T2788 209-212 NN denotes MTF
T2789 215-226 JJ denotes independent
T2790 212-213 HYPH denotes -
T2791 213-214 CD denotes 1
T2792 214-215 HYPH denotes -
T2793 232-233 . denotes .
T2794 233-422 sentence denotes Genes were considered to be differentially expressed if there was at least a 2-fold difference in expression levels of the compared experimental groups (genotype and respective treatment).
T2795 234-239 NNS denotes Genes
T2796 245-255 VBN denotes considered
T2797 240-244 VBD denotes were
T2798 256-258 TO denotes to
T2799 277-286 VBN denotes expressed
T2800 259-261 VB denotes be
T2801 262-276 RB denotes differentially
T2802 287-289 IN denotes if
T2803 296-299 VBD denotes was
T2804 290-295 EX denotes there
T2805 300-302 RB denotes at
T2806 303-308 RBS denotes least
T2807 311-317 JJ denotes 2-fold
T2808 309-310 DT denotes a
T2809 318-328 NN denotes difference
T2810 329-331 IN denotes in
T2811 332-342 NN denotes expression
T2812 343-349 NNS denotes levels
T2813 350-352 IN denotes of
T2814 353-356 DT denotes the
T2815 379-385 NNS denotes groups
T2816 357-365 VBN denotes compared
T2817 366-378 JJ denotes experimental
T2818 386-387 -LRB- denotes (
T2819 387-395 NN denotes genotype
T2820 396-399 CC denotes and
T2821 400-410 JJ denotes respective
T2822 411-420 NN denotes treatment
T2823 420-421 -RRB- denotes )
T2824 421-422 . denotes .
T2825 422-607 sentence denotes The result was considered reliable if signal values for the respective gene were scored ‘present’ at least for all mice in one experimental group or for two mice in each of two groups.
T2826 423-426 DT denotes The
T2827 427-433 NN denotes result
T2828 438-448 VBN denotes considered
T2829 434-437 VBD denotes was
T2830 449-457 JJ denotes reliable
T2831 458-460 IN denotes if
T2832 504-510 VBN denotes scored
T2833 461-467 NN denotes signal
T2834 468-474 NNS denotes values
T2835 475-478 IN denotes for
T2836 479-482 DT denotes the
T2837 494-498 NN denotes gene
T2838 483-493 JJ denotes respective
T2839 499-503 VBD denotes were
T2840 511-512 `` denotes ‘
T2841 512-519 JJ denotes present
T2842 519-520 '' denotes ’
T2843 521-523 RB denotes at
T2844 524-529 RBS denotes least
T2845 530-533 IN denotes for
T2846 534-537 DT denotes all
T2847 538-542 NNS denotes mice
T2848 543-545 IN denotes in
T2849 546-549 CD denotes one
T2850 563-568 NN denotes group
T2851 550-562 JJ denotes experimental
T2852 569-571 CC denotes or
T2853 572-575 IN denotes for
T2854 576-579 CD denotes two
T2855 580-584 NNS denotes mice
T2856 585-587 IN denotes in
T2857 588-592 DT denotes each
T2858 593-595 IN denotes of
T2859 596-599 CD denotes two
T2860 600-606 NNS denotes groups
T2861 606-607 . denotes .
R1688 T2750 T2751 compound Data,analysis
R1689 T2751 T2752 nsubjpass analysis,performed
R1690 T2753 T2752 auxpass was,performed
R1691 T2754 T2752 prep with,performed
R1692 T2755 T2756 nmod GeneSpring,software
R1693 T2756 T2754 pobj software,with
R1694 T2757 T2756 nummod 6.1,software
R1695 T2758 T2759 punct (,Genetics
R1696 T2759 T2756 parataxis Genetics,software
R1697 T2760 T2759 compound Silicon,Genetics
R1698 T2761 T2759 punct ),Genetics
R1699 T2762 T2752 punct ", ",performed
R1700 T2763 T2752 advcl applying,performed
R1701 T2764 T2765 det a,level
R1702 T2765 T2763 dobj level,applying
R1703 T2766 T2765 compound significance,level
R1704 T2767 T2768 nsubj P,0.05
R1705 T2768 T2765 appos 0.05,level
R1706 T2769 T2768 punct ≤,0.05
R1707 T2770 T2752 punct .,performed
R1708 T2772 T2773 advmod Furthermore,used
R1709 T2774 T2773 punct ", ",used
R1710 T2775 T2776 amod multiple,correction
R1711 T2776 T2773 nsubjpass correction,used
R1712 T2777 T2776 compound testing,correction
R1713 T2778 T2773 auxpass was,used
R1714 T2779 T2773 prep in,used
R1715 T2780 T2779 pobj addition,in
R1716 T2781 T2782 aux to,obtain
R1717 T2782 T2773 advcl obtain,used
R1718 T2783 T2784 npadvmod cadmium,responsive
R1719 T2784 T2786 amod responsive,genes
R1720 T2785 T2784 punct -,responsive
R1722 T2787 T2786 punct ", ",genes
R1723 T2788 T2789 npadvmod MTF,independent
R1724 T2789 T2786 amod independent,genes
R1725 T2790 T2788 punct -,MTF
R1726 T2791 T2788 nummod 1,MTF
R1727 T2792 T2789 punct -,independent
R1728 T2793 T2773 punct .,used
R1729 T2795 T2796 nsubjpass Genes,considered
R1730 T2797 T2796 auxpass were,considered
R1731 T2798 T2799 aux to,expressed
R1732 T2799 T2796 xcomp expressed,considered
R1733 T2800 T2799 auxpass be,expressed
R1734 T2801 T2799 advmod differentially,expressed
R1735 T2802 T2803 mark if,was
R1736 T2803 T2799 advcl was,expressed
R1737 T2804 T2803 expl there,was
R1738 T2805 T2806 advmod at,least
R1739 T2806 T2807 advmod least,2-fold
R1740 T2807 T2809 nummod 2-fold,difference
R1741 T2808 T2807 quantmod a,2-fold
R1742 T2809 T2803 attr difference,was
R1743 T2810 T2809 prep in,difference
R1744 T2811 T2812 compound expression,levels
R1745 T2812 T2810 pobj levels,in
R1746 T2813 T2812 prep of,levels
R1747 T2814 T2815 det the,groups
R1748 T2815 T2813 pobj groups,of
R1749 T2816 T2815 amod compared,groups
R1750 T2817 T2815 amod experimental,groups
R1751 T2818 T2819 punct (,genotype
R1752 T2819 T2803 parataxis genotype,was
R1753 T2820 T2819 cc and,genotype
R1754 T2821 T2822 amod respective,treatment
R1755 T2822 T2819 conj treatment,genotype
R1756 T2823 T2819 punct ),genotype
R1757 T2824 T2796 punct .,considered
R1758 T2826 T2827 det The,result
R1759 T2827 T2828 nsubjpass result,considered
R1760 T2829 T2828 auxpass was,considered
R1761 T2830 T2828 oprd reliable,considered
R1762 T2831 T2832 mark if,scored
R1763 T2832 T2828 advcl scored,considered
R1764 T2833 T2834 compound signal,values
R1765 T2834 T2832 nsubjpass values,scored
R1766 T2835 T2834 prep for,values
R1767 T2836 T2837 det the,gene
R1768 T2837 T2835 pobj gene,for
R1769 T2838 T2837 amod respective,gene
R1770 T2839 T2832 auxpass were,scored
R1771 T2840 T2841 punct ‘,present
R1772 T2841 T2832 oprd present,scored
R1773 T2842 T2832 punct ’,scored
R1774 T2843 T2844 advmod at,least
R1775 T2844 T2845 advmod least,for
R1776 T2845 T2828 prep for,considered
R1777 T2846 T2847 det all,mice
R1778 T2847 T2845 pobj mice,for
R1779 T2848 T2847 prep in,mice
R1780 T2849 T2850 nummod one,group
R1781 T2850 T2848 pobj group,in
R1782 T2851 T2850 amod experimental,group
R1783 T2852 T2845 cc or,for
R1784 T2853 T2845 conj for,for
R1785 T2854 T2855 nummod two,mice
R1786 T2855 T2853 pobj mice,for
R1787 T2856 T2855 prep in,mice
R1788 T2857 T2856 pobj each,in
R1789 T2858 T2857 prep of,each
R1790 T2859 T2860 nummod two,groups
R1791 T2860 T2858 pobj groups,of
R1792 T2861 T2828 punct .,considered
R1721 T2786 T2782 dobj genes,obtain

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2473 209-214 PR:000010717 denotes MTF-1
T2474 227-232 SO:0000704 denotes genes
T2475 234-239 SO:0000704 denotes Genes
T2476 277-286 GO:0010467 denotes expressed
T2477 332-342 GO:0010467 denotes expression
T2478 494-498 SO:0000704 denotes gene
T2479 538-542 NCBITaxon:10088 denotes mice
T2480 580-584 NCBITaxon:10088 denotes mice

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2513 66-74 OBI_SO_EXT:gene_or_genetic_investigation_or_genetic_process denotes Genetics
T2514 189-196 CHEBI_EXT:cadmium denotes cadmium
T2515 209-214 PR_EXT:000010717 denotes MTF-1
T2516 227-232 SO_EXT:0000704 denotes genes
T2517 234-239 SO_EXT:0000704 denotes Genes
T2518 277-286 GO:0010467 denotes expressed
T2519 332-342 GO:0010467 denotes expression
T2520 387-395 SO_EXT:genotype_or_entity_with_genotype denotes genotype
T2521 494-498 SO_EXT:0000704 denotes gene
T2522 538-542 NCBITaxon:10088 denotes mice
T2523 580-584 NCBITaxon:10088 denotes mice