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PMC:1253828 / 28194-28646 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T8565 0-7 IN denotes Besides
T8566 90-101 VBN denotes upregulated
T8567 8-13 NNS denotes genes
T8568 14-21 VBN denotes related
T8569 22-24 IN denotes to
T8570 25-28 DT denotes the
T8571 41-48 NN denotes pathway
T8572 29-40 NN denotes glutathione
T8573 48-50 , denotes ,
T8574 50-57 JJ denotes several
T8575 79-84 NNS denotes genes
T8576 58-63 JJ denotes other
T8577 64-70 NN denotes stress
T8578 71-78 VBN denotes related
T8579 70-71 HYPH denotes -
T8580 85-89 VBD denotes were
T8581 102-106 IN denotes upon
T8582 107-114 NN denotes cadmium
T8583 115-123 NN denotes exposure
T8584 123-125 , denotes ,
T8585 125-134 VBG denotes including
T8586 135-140 NNS denotes genes
T8587 141-144 IN denotes for
T8588 145-156 NN denotes thioredoxin
T8589 157-166 NN denotes reductase
T8590 167-168 CD denotes 1
T8591 169-170 -LRB- denotes (
T8592 170-176 NN denotes Txnrd1
T8593 176-177 -RRB- denotes )
T8594 177-179 , denotes ,
T8595 179-182 CD denotes one
T8596 183-185 IN denotes of
T8597 186-189 DT denotes the
T8598 199-206 NNS denotes enzymes
T8599 190-198 VBG denotes reducing
T8600 207-209 IN denotes of
T8601 210-213 DT denotes the
T8602 226-237 NN denotes thioredoxin
T8603 214-225 NN denotes antioxidant
T8604 238-239 -LRB- denotes (
T8605 239-241 CD denotes 46
T8606 241-242 -RRB- denotes )
T8607 242-243 : denotes ;
T8608 244-248 NN denotes KDEL
T8609 289-297 NN denotes receptor
T8610 249-260 JJ denotes endoplasmic
T8611 261-270 NN denotes reticulum
T8612 271-278 NN denotes protein
T8613 279-288 NN denotes retention
T8614 298-299 CD denotes 2
T8615 300-301 -LRB- denotes (
T8616 301-307 NN denotes Kdelr2
T8617 307-308 -RRB- denotes )
T8618 309-322 VBG denotes participating
T8619 323-325 IN denotes in
T8620 326-328 NN denotes ER
T8621 336-344 NN denotes response
T8622 329-335 NN denotes stress
T8623 345-346 -LRB- denotes (
T8624 346-348 CD denotes 47
T8625 348-349 -RRB- denotes )
T8626 349-350 : denotes ;
T8627 351-354 CC denotes and
T8628 355-358 DT denotes the
T8629 390-400 NN denotes athanogene
T8630 359-373 JJ denotes anti-apoptotic
T8631 374-378 NN denotes Bcl2
T8632 378-379 HYPH denotes -
T8633 379-389 VBN denotes associated
T8634 401-402 CD denotes 3
T8635 403-404 -LRB- denotes (
T8636 404-408 NN denotes Bag3
T8637 408-409 -RRB- denotes )
T8638 410-418 VBN denotes involved
T8639 419-421 IN denotes in
T8640 422-428 NN denotes stress
T8641 429-436 VBN denotes induced
T8642 428-429 HYPH denotes -
T8643 437-446 NN denotes apoptosis
T8644 447-448 -LRB- denotes (
T8645 448-450 CD denotes 48
T8646 450-451 -RRB- denotes )
T8647 451-452 . denotes .
R5465 T8565 T8566 prep Besides,upregulated
R5466 T8567 T8565 pobj genes,Besides
R5467 T8568 T8567 acl related,genes
R5468 T8569 T8568 prep to,related
R5469 T8570 T8571 det the,pathway
R5470 T8571 T8569 pobj pathway,to
R5471 T8572 T8571 compound glutathione,pathway
R5472 T8573 T8566 punct ", ",upregulated
R5473 T8574 T8575 amod several,genes
R5474 T8575 T8566 nsubjpass genes,upregulated
R5475 T8576 T8575 amod other,genes
R5476 T8577 T8578 npadvmod stress,related
R5477 T8578 T8575 amod related,genes
R5478 T8579 T8578 punct -,related
R5479 T8580 T8566 auxpass were,upregulated
R5480 T8581 T8566 prep upon,upregulated
R5481 T8582 T8583 compound cadmium,exposure
R5482 T8583 T8581 pobj exposure,upon
R5483 T8584 T8566 punct ", ",upregulated
R5484 T8585 T8566 prep including,upregulated
R5485 T8586 T8585 pobj genes,including
R5486 T8587 T8586 prep for,genes
R5487 T8588 T8589 compound thioredoxin,reductase
R5488 T8589 T8587 pobj reductase,for
R5489 T8590 T8589 nummod 1,reductase
R5490 T8591 T8589 punct (,reductase
R5491 T8592 T8589 appos Txnrd1,reductase
R5492 T8593 T8589 punct ),reductase
R5493 T8594 T8589 punct ", ",reductase
R5494 T8595 T8589 appos one,reductase
R5495 T8596 T8595 prep of,one
R5496 T8597 T8598 det the,enzymes
R5497 T8598 T8596 pobj enzymes,of
R5498 T8599 T8598 amod reducing,enzymes
R5499 T8600 T8595 prep of,one
R5500 T8601 T8602 det the,thioredoxin
R5501 T8602 T8600 pobj thioredoxin,of
R5502 T8603 T8602 compound antioxidant,thioredoxin
R5503 T8604 T8605 punct (,46
R5504 T8605 T8602 parataxis 46,thioredoxin
R5505 T8606 T8605 punct ),46
R5506 T8607 T8589 punct ;,reductase
R5507 T8608 T8609 nmod KDEL,receptor
R5508 T8609 T8589 conj receptor,reductase
R5509 T8610 T8609 amod endoplasmic,receptor
R5510 T8611 T8609 compound reticulum,receptor
R5511 T8612 T8609 compound protein,receptor
R5512 T8613 T8609 compound retention,receptor
R5513 T8614 T8609 nummod 2,receptor
R5514 T8615 T8609 punct (,receptor
R5515 T8616 T8609 appos Kdelr2,receptor
R5516 T8617 T8609 punct ),receptor
R5517 T8618 T8609 acl participating,receptor
R5518 T8619 T8618 prep in,participating
R5519 T8620 T8621 compound ER,response
R5520 T8621 T8619 pobj response,in
R5521 T8622 T8621 compound stress,response
R5522 T8623 T8624 punct (,47
R5523 T8624 T8621 parataxis 47,response
R5524 T8625 T8624 punct ),47
R5525 T8626 T8609 punct ;,receptor
R5526 T8627 T8609 cc and,receptor
R5527 T8628 T8629 det the,athanogene
R5528 T8629 T8609 conj athanogene,receptor
R5529 T8630 T8629 amod anti-apoptotic,athanogene
R5530 T8631 T8629 nmod Bcl2,athanogene
R5531 T8632 T8629 punct -,athanogene
R5532 T8633 T8629 amod associated,athanogene
R5533 T8634 T8629 nummod 3,athanogene
R5534 T8635 T8629 punct (,athanogene
R5535 T8636 T8629 appos Bag3,athanogene
R5536 T8637 T8629 punct ),athanogene
R5537 T8638 T8629 acl involved,athanogene
R5538 T8639 T8638 prep in,involved
R5539 T8640 T8641 npadvmod stress,induced
R5540 T8641 T8643 amod induced,apoptosis
R5541 T8642 T8641 punct -,induced
R5542 T8643 T8639 pobj apoptosis,in
R5543 T8644 T8645 punct (,48
R5544 T8645 T8643 parataxis 48,apoptosis
R5545 T8646 T8645 punct ),48
R5546 T8647 T8566 punct .,upregulated

2_test

Id Subject Object Predicate Lexical cue
16221973-14980055-77403442 239-241 14980055 denotes 46
16221973-12821650-77403443 346-348 12821650 denotes 47
16221973-14628070-77403444 448-450 14628070 denotes 48

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7957 8-13 SO:0000704 denotes genes
T7958 29-40 CHEBI:16856 denotes glutathione
T7959 79-84 SO:0000704 denotes genes
T7960 135-140 SO:0000704 denotes genes
T7961 145-168 PR:000016871 denotes thioredoxin reductase 1
T7962 170-176 PR:000016871 denotes Txnrd1
T7963 190-198 MOP:0000569 denotes reducing
T7964 244-299 PR:000009274 denotes KDEL endoplasmic reticulum protein retention receptor 2
T7965 249-270 GO:0005783 denotes endoplasmic reticulum
T7966 249-288 GO:0035437 denotes endoplasmic reticulum protein retention
T7967 301-307 PR:000009274 denotes Kdelr2
T7968 326-328 GO:0005783 denotes ER
T7969 374-402 PR:000004621 denotes Bcl2-associated athanogene 3
T7970 404-408 PR:000004621 denotes Bag3
T7971 437-446 GO:0006915 denotes apoptosis

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8083 8-13 SO_EXT:0000704 denotes genes
T8084 29-40 CHEBI:16856 denotes glutathione
T8085 79-84 SO_EXT:0000704 denotes genes
T8086 90-101 GO_EXT:positive_regulation denotes upregulated
T8087 107-114 CHEBI_EXT:cadmium denotes cadmium
T8088 135-140 SO_EXT:0000704 denotes genes
T8089 145-156 CHEBI_PR_EXT:thioredoxin denotes thioredoxin
T8090 145-166 GO_EXT:0004791 denotes thioredoxin reductase
T8091 145-168 PR_EXT:000016871 denotes thioredoxin reductase 1
T8092 170-176 PR_EXT:000016871 denotes Txnrd1
T8093 190-198 MOP:0000569 denotes reducing
T8094 199-206 CHEBI_GO_SO_EXT:enzyme denotes enzymes
T8095 214-225 CHEBI_GO_EXT:antioxidant denotes antioxidant
T8096 218-225 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T8097 226-237 CHEBI_PR_EXT:thioredoxin denotes thioredoxin
T8098 244-299 PR_EXT:000009274 denotes KDEL endoplasmic reticulum protein retention receptor 2
T8099 249-270 GO:0005783 denotes endoplasmic reticulum
T8100 249-288 GO:0035437 denotes endoplasmic reticulum protein retention
T8101 271-278 CHEBI_PR_EXT:protein denotes protein
T8102 289-297 GO_EXT:0004872 denotes receptor
T8103 301-307 PR_EXT:000009274 denotes Kdelr2
T8104 326-328 GO:0005783 denotes ER
T8105 336-344 GO_EXT:reaction_or_response denotes response
T8106 364-373 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T8107 374-402 PR_EXT:000004621 denotes Bcl2-associated athanogene 3
T8108 404-408 PR_EXT:000004621 denotes Bag3
T8109 437-446 GO:0006915 denotes apoptosis