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PMC:1253828 / 25541-25909 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T7685 0-3 CD denotes One
T7686 23-31 NN denotes sequence
T7687 4-7 NN denotes MRE
T7688 8-12 NN denotes core
T7689 13-22 NN denotes consensus
T7690 36-41 VBN denotes found
T7691 32-35 VBD denotes was
T7692 122-125 NN denotes one
T7693 42-46 RB denotes just
T7694 47-55 RB denotes upstream
T7695 56-58 IN denotes of
T7696 59-62 DT denotes the
T7697 92-97 NN denotes start
T7698 63-68 NN denotes mouse
T7699 69-77 NN denotes Slc39a10
T7700 78-91 NN denotes transcription
T7701 98-99 -LRB- denotes (
T7702 109-111 NN denotes bp
T7703 99-103 NN denotes MRE1
T7704 103-105 , denotes ,
T7705 105-106 SYM denotes −
T7706 106-108 CD denotes 21
T7707 111-112 -RRB- denotes )
T7708 112-114 , denotes ,
T7709 114-121 DT denotes another
T7710 126-134 RB denotes directly
T7711 135-145 JJ denotes downstream
T7712 146-147 -LRB- denotes (
T7713 168-170 NN denotes 5b
T7714 147-151 NN denotes MRE2
T7715 151-153 , denotes ,
T7716 153-154 SYM denotes +
T7717 154-156 CD denotes 17
T7718 157-159 NN denotes bp
T7719 159-160 : denotes ;
T7720 161-167 NN denotes Figure
T7721 170-171 -RRB- denotes )
T7722 171-172 . denotes .
T7723 172-368 sentence denotes Specific binding of MTF-1 was observed in EMSA analysis for MRE2 with liver protein extract from an Mtf1loxP but not from an Mtf1Mx-cre mouse, while no binding was detected with MRE1 (Figure 5c).
T7724 173-181 JJ denotes Specific
T7725 182-189 NN denotes binding
T7726 203-211 VBN denotes observed
T7727 190-192 IN denotes of
T7728 193-196 NN denotes MTF
T7729 196-197 HYPH denotes -
T7730 197-198 CD denotes 1
T7731 199-202 VBD denotes was
T7732 212-214 IN denotes in
T7733 215-219 NN denotes EMSA
T7734 220-228 NN denotes analysis
T7735 229-232 IN denotes for
T7736 233-237 NN denotes MRE2
T7737 238-242 IN denotes with
T7738 243-248 NN denotes liver
T7739 257-264 NN denotes extract
T7740 249-256 NN denotes protein
T7741 265-269 IN denotes from
T7742 270-272 DT denotes an
T7743 273-281 NN denotes Mtf1loxP
T7744 282-285 CC denotes but
T7745 286-289 RB denotes not
T7746 290-294 IN denotes from
T7747 295-297 DT denotes an
T7748 309-314 NN denotes mouse
T7749 298-304 NN denotes Mtf1Mx
T7750 305-308 NN denotes cre
T7751 304-305 HYPH denotes -
T7752 314-316 , denotes ,
T7753 316-321 IN denotes while
T7754 337-345 VBN denotes detected
T7755 322-324 DT denotes no
T7756 325-332 NN denotes binding
T7757 333-336 VBD denotes was
T7758 346-350 IN denotes with
T7759 351-355 NN denotes MRE1
T7760 356-357 -LRB- denotes (
T7761 364-366 NN denotes 5c
T7762 357-363 NN denotes Figure
T7763 366-367 -RRB- denotes )
T7764 367-368 . denotes .
R4952 T7685 T7686 nummod One,sequence
R4953 T7686 T7690 nsubjpass sequence,found
R4954 T7687 T7686 compound MRE,sequence
R4955 T7688 T7689 compound core,consensus
R4956 T7689 T7686 compound consensus,sequence
R4957 T7690 T7692 ccomp found,one
R4958 T7691 T7690 auxpass was,found
R4959 T7693 T7694 advmod just,upstream
R4960 T7694 T7690 advmod upstream,found
R4961 T7695 T7694 prep of,upstream
R4962 T7696 T7697 det the,start
R4963 T7697 T7695 pobj start,of
R4964 T7698 T7697 compound mouse,start
R4965 T7699 T7697 compound Slc39a10,start
R4966 T7700 T7697 compound transcription,start
R4967 T7701 T7702 punct (,bp
R4968 T7702 T7690 parataxis bp,found
R4969 T7703 T7702 dep MRE1,bp
R4970 T7704 T7702 punct ", ",bp
R4971 T7705 T7706 punct −,21
R4972 T7706 T7702 nummod 21,bp
R4973 T7707 T7702 punct ),bp
R4974 T7708 T7692 punct ", ",one
R4975 T7709 T7692 det another,one
R4976 T7710 T7711 advmod directly,downstream
R4977 T7711 T7692 amod downstream,one
R4978 T7712 T7713 punct (,5b
R4979 T7713 T7692 parataxis 5b,one
R4980 T7714 T7713 dep MRE2,5b
R4981 T7715 T7713 punct ", ",5b
R4982 T7716 T7717 punct +,17
R4983 T7717 T7718 nummod 17,bp
R4984 T7718 T7713 dep bp,5b
R4985 T7719 T7713 punct ;,5b
R4986 T7720 T7713 compound Figure,5b
R4987 T7721 T7713 punct ),5b
R4988 T7722 T7692 punct .,one
R4989 T7724 T7725 amod Specific,binding
R4990 T7725 T7726 nsubjpass binding,observed
R4991 T7727 T7725 prep of,binding
R4992 T7728 T7727 pobj MTF,of
R4993 T7729 T7728 punct -,MTF
R4994 T7730 T7728 nummod 1,MTF
R4995 T7731 T7726 auxpass was,observed
R4996 T7732 T7726 prep in,observed
R4997 T7733 T7734 compound EMSA,analysis
R4998 T7734 T7732 pobj analysis,in
R4999 T7735 T7734 prep for,analysis
R5000 T7736 T7735 pobj MRE2,for
R5001 T7737 T7734 prep with,analysis
R5002 T7738 T7739 compound liver,extract
R5003 T7739 T7737 pobj extract,with
R5004 T7740 T7739 compound protein,extract
R5005 T7741 T7739 prep from,extract
R5006 T7742 T7743 det an,Mtf1loxP
R5007 T7743 T7741 pobj Mtf1loxP,from
R5008 T7744 T7741 cc but,from
R5009 T7745 T7744 neg not,but
R5010 T7746 T7741 conj from,from
R5011 T7747 T7748 det an,mouse
R5012 T7748 T7746 pobj mouse,from
R5013 T7749 T7750 compound Mtf1Mx,cre
R5014 T7750 T7748 compound cre,mouse
R5015 T7751 T7750 punct -,cre
R5016 T7752 T7726 punct ", ",observed
R5017 T7753 T7754 mark while,detected
R5018 T7754 T7726 advcl detected,observed
R5019 T7755 T7756 det no,binding
R5020 T7756 T7754 nsubjpass binding,detected
R5021 T7757 T7754 auxpass was,detected
R5022 T7758 T7754 prep with,detected
R5023 T7759 T7758 pobj MRE1,with
R5024 T7760 T7761 punct (,5c
R5025 T7761 T7754 parataxis 5c,detected
R5026 T7762 T7761 compound Figure,5c
R5027 T7763 T7761 punct ),5c
R5028 T7764 T7726 punct .,observed

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7333 13-22 SO:0000993 denotes consensus
T7334 63-68 NCBITaxon:10088 denotes mouse
T7335 69-77 PR:000015124 denotes Slc39a10
T7336 109-111 SO:0000028 denotes bp
T7337 157-159 SO:0000028 denotes bp
T7338 193-198 PR:000010717 denotes MTF-1
T7339 243-248 UBERON:0002107 denotes liver
T7340 273-277 PR:000010717 denotes Mtf1
T7341 277-281 SO:0000346 denotes loxP
T7342 298-302 PR:000010717 denotes Mtf1
T7343 302-304 PR:000010788 denotes Mx
T7344 309-314 NCBITaxon:10088 denotes mouse

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7402 13-22 SO:0000993 denotes consensus
T7403 23-31 SO_EXT:biological_sequence denotes sequence
T7404 47-55 SO_EXT:sequence_upstreamness denotes upstream
T7405 63-68 NCBITaxon:10088 denotes mouse
T7406 69-77 PR_EXT:000015124 denotes Slc39a10
T7407 78-97 GO_SO_EXT:transcriptional_start_entity_or_process denotes transcription start
T7408 109-111 SO_EXT:0000028 denotes bp
T7409 135-145 SO_EXT:sequence_downstreamness denotes downstream
T7410 157-159 SO_EXT:0000028 denotes bp
T7411 182-189 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T7412 193-198 PR_EXT:000010717 denotes MTF-1
T7413 243-248 UBERON:0002107 denotes liver
T7414 249-256 CHEBI_PR_EXT:protein denotes protein
T7415 273-277 PR_EXT:000010717 denotes Mtf1
T7416 277-281 SO_EXT:0000346 denotes loxP
T7417 298-302 PR_EXT:000010717 denotes Mtf1
T7418 302-304 PR_EXT:000010788 denotes Mx
T7419 309-314 NCBITaxon:10088 denotes mouse
T7420 325-332 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding