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PMC:1253828 / 20121-21564 JSONTXT

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Id Subject Object Predicate Lexical cue
T6000 0-5 JJ denotes Basal
T6001 6-16 NN denotes expression
T6002 26-33 VBZ denotes depends
T6003 17-19 IN denotes of
T6004 20-25 NN denotes Sepw1
T6005 34-36 IN denotes on
T6006 37-40 NN denotes MTF
T6007 40-41 HYPH denotes -
T6008 41-42 CD denotes 1
T6009 42-192 sentence denotes Sepw1 was found in microarray analysis to be significantly downregulated in livers from cadmium- and mock-treated Mtf1Mx-cre mice (Table 1, a and c).
T6010 43-48 NN denotes Sepw1
T6011 53-58 VBN denotes found
T6012 49-52 VBD denotes was
T6013 59-61 IN denotes in
T6014 62-72 NN denotes microarray
T6015 73-81 NN denotes analysis
T6016 82-84 TO denotes to
T6017 85-87 VB denotes be
T6018 88-101 RB denotes significantly
T6019 102-115 JJ denotes downregulated
T6020 116-118 IN denotes in
T6021 119-125 NNS denotes livers
T6022 126-130 IN denotes from
T6023 131-138 NN denotes cadmium
T6024 149-156 VBN denotes treated
T6025 138-139 HYPH denotes -
T6026 140-143 CC denotes and
T6027 144-148 JJ denotes mock
T6028 148-149 HYPH denotes -
T6029 168-172 NNS denotes mice
T6030 157-163 NN denotes Mtf1Mx
T6031 164-167 NN denotes cre
T6032 163-164 HYPH denotes -
T6033 173-174 -LRB- denotes (
T6034 183-184 NN denotes a
T6035 174-179 NN denotes Table
T6036 180-181 CD denotes 1
T6037 181-183 , denotes ,
T6038 185-188 CC denotes and
T6039 189-190 NN denotes c
T6040 190-191 -RRB- denotes )
T6041 191-192 . denotes .
T6042 192-319 sentence denotes SEPW1 is a selenocysteine-containing protein that binds glutathione (35) and is thought to act as an antioxidant in vivo (36).
T6043 193-198 NN denotes SEPW1
T6044 199-201 VBZ denotes is
T6045 202-203 DT denotes a
T6046 230-237 NN denotes protein
T6047 204-218 NN denotes selenocysteine
T6048 219-229 VBG denotes containing
T6049 218-219 HYPH denotes -
T6050 238-242 WDT denotes that
T6051 243-248 VBZ denotes binds
T6052 249-260 NN denotes glutathione
T6053 261-262 -LRB- denotes (
T6054 262-264 CD denotes 35
T6055 264-265 -RRB- denotes )
T6056 266-269 CC denotes and
T6057 270-272 VBZ denotes is
T6058 273-280 VBN denotes thought
T6059 281-283 TO denotes to
T6060 284-287 VB denotes act
T6061 288-290 IN denotes as
T6062 291-293 DT denotes an
T6063 294-305 NN denotes antioxidant
T6064 306-308 FW denotes in
T6065 309-313 FW denotes vivo
T6066 314-315 -LRB- denotes (
T6067 315-317 CD denotes 36
T6068 317-318 -RRB- denotes )
T6069 318-319 . denotes .
T6070 319-502 sentence denotes Sepw1 expression in livers of pI–pC-induced, mock- or cadmium-treated Mtf1Mx-cre and Mtf1loxP mice was further analyzed by semiquantitative RT–PCRs and S1 analysis (Figure 2a and b).
T6071 320-325 NN denotes Sepw1
T6072 326-336 NN denotes expression
T6073 431-439 VBN denotes analyzed
T6074 337-339 IN denotes in
T6075 340-346 NNS denotes livers
T6076 347-349 IN denotes of
T6077 350-352 NN denotes pI
T6078 353-355 NN denotes pC
T6079 352-353 HYPH denotes –
T6080 356-363 VBN denotes induced
T6081 355-356 HYPH denotes -
T6082 414-418 NNS denotes mice
T6083 363-365 , denotes ,
T6084 365-369 JJ denotes mock
T6085 382-389 VBN denotes treated
T6086 369-370 HYPH denotes -
T6087 371-373 CC denotes or
T6088 374-381 NN denotes cadmium
T6089 381-382 HYPH denotes -
T6090 390-396 NN denotes Mtf1Mx
T6091 397-400 NN denotes cre
T6092 396-397 HYPH denotes -
T6093 401-404 CC denotes and
T6094 405-413 NN denotes Mtf1loxP
T6095 419-422 VBD denotes was
T6096 423-430 RB denotes further
T6097 440-442 IN denotes by
T6098 443-459 JJ denotes semiquantitative
T6099 475-483 NN denotes analysis
T6100 460-462 NN denotes RT
T6101 463-467 NNS denotes PCRs
T6102 462-463 HYPH denotes –
T6103 468-471 CC denotes and
T6104 472-474 NN denotes S1
T6105 484-485 -LRB- denotes (
T6106 492-494 NN denotes 2a
T6107 485-491 NN denotes Figure
T6108 495-498 CC denotes and
T6109 499-500 NN denotes b
T6110 500-501 -RRB- denotes )
T6111 501-502 . denotes .
T6112 502-657 sentence denotes In accordance with microarray data a slight, if any, upregulation of Sepw1 transcription was observed in livers from Mtf1loxP mice upon cadmium treatment.
T6113 503-505 IN denotes In
T6114 596-604 VBN denotes observed
T6115 506-516 NN denotes accordance
T6116 517-521 IN denotes with
T6117 522-532 NN denotes microarray
T6118 533-537 NNS denotes data
T6119 538-539 DT denotes a
T6120 556-568 NN denotes upregulation
T6121 540-546 JJ denotes slight
T6122 546-548 , denotes ,
T6123 551-554 DT denotes any
T6124 548-550 IN denotes if
T6125 554-556 , denotes ,
T6126 569-571 IN denotes of
T6127 572-577 NN denotes Sepw1
T6128 578-591 NN denotes transcription
T6129 592-595 VBD denotes was
T6130 605-607 IN denotes in
T6131 608-614 NNS denotes livers
T6132 615-619 IN denotes from
T6133 620-628 NN denotes Mtf1loxP
T6134 629-633 NNS denotes mice
T6135 634-638 IN denotes upon
T6136 639-646 NN denotes cadmium
T6137 647-656 NN denotes treatment
T6138 656-657 . denotes .
T6139 657-813 sentence denotes The basal level was reduced in livers from mock- and cadmium-treated Mtf1Mx-cre mice, indicating that MTF-1 is important for the basal expression of Sepw1.
T6140 658-661 DT denotes The
T6141 668-673 NN denotes level
T6142 662-667 JJ denotes basal
T6143 678-685 VBN denotes reduced
T6144 674-677 VBD denotes was
T6145 686-688 IN denotes in
T6146 689-695 NNS denotes livers
T6147 696-700 IN denotes from
T6148 701-705 JJ denotes mock
T6149 719-726 VBN denotes treated
T6150 705-706 HYPH denotes -
T6151 707-710 CC denotes and
T6152 711-718 NN denotes cadmium
T6153 718-719 HYPH denotes -
T6154 738-742 NNS denotes mice
T6155 727-733 NN denotes Mtf1Mx
T6156 734-737 NN denotes cre
T6157 733-734 HYPH denotes -
T6158 742-744 , denotes ,
T6159 744-754 VBG denotes indicating
T6160 755-759 IN denotes that
T6161 766-768 VBZ denotes is
T6162 760-763 NN denotes MTF
T6163 763-764 HYPH denotes -
T6164 764-765 CD denotes 1
T6165 769-778 JJ denotes important
T6166 779-782 IN denotes for
T6167 783-786 DT denotes the
T6168 793-803 NN denotes expression
T6169 787-792 JJ denotes basal
T6170 804-806 IN denotes of
T6171 807-812 NN denotes Sepw1
T6172 812-813 . denotes .
T6173 813-934 sentence denotes Three MRE core consensus sequences were found in the region upstream of the mouse Sepw1 transcription start (Figure 2c).
T6174 814-819 CD denotes Three
T6175 839-848 NNS denotes sequences
T6176 820-823 NN denotes MRE
T6177 824-828 NN denotes core
T6178 829-838 NN denotes consensus
T6179 854-859 VBN denotes found
T6180 849-853 VBD denotes were
T6181 860-862 IN denotes in
T6182 863-866 DT denotes the
T6183 867-873 NN denotes region
T6184 874-882 RB denotes upstream
T6185 883-885 IN denotes of
T6186 886-889 DT denotes the
T6187 916-921 NN denotes start
T6188 890-895 NN denotes mouse
T6189 896-901 NN denotes Sepw1
T6190 902-915 NN denotes transcription
T6191 922-923 -LRB- denotes (
T6192 930-932 NN denotes 2c
T6193 923-929 NN denotes Figure
T6194 932-933 -RRB- denotes )
T6195 933-934 . denotes .
T6196 934-1107 sentence denotes Two of them in opposite orientation overlap almost completely proximal to the transcription start (MRE1, −40 bp), the third one is located further upstream (MRE2, −527 bp).
T6197 935-938 CD denotes Two
T6198 971-978 VBP denotes overlap
T6199 939-941 IN denotes of
T6200 942-946 PRP denotes them
T6201 947-949 IN denotes in
T6202 950-958 JJ denotes opposite
T6203 959-970 NN denotes orientation
T6204 1066-1073 VBN denotes located
T6205 979-985 RB denotes almost
T6206 986-996 RB denotes completely
T6207 997-1005 RB denotes proximal
T6208 1006-1008 IN denotes to
T6209 1009-1012 DT denotes the
T6210 1027-1032 NN denotes start
T6211 1013-1026 NN denotes transcription
T6212 1033-1034 -LRB- denotes (
T6213 1044-1046 NN denotes bp
T6214 1034-1038 NN denotes MRE1
T6215 1038-1040 , denotes ,
T6216 1040-1041 SYM denotes −
T6217 1041-1043 CD denotes 40
T6218 1046-1047 -RRB- denotes )
T6219 1047-1049 , denotes ,
T6220 1049-1052 DT denotes the
T6221 1059-1062 NN denotes one
T6222 1053-1058 JJ denotes third
T6223 1063-1065 VBZ denotes is
T6224 1074-1081 RB denotes further
T6225 1082-1090 RB denotes upstream
T6226 1091-1092 -LRB- denotes (
T6227 1103-1105 NN denotes bp
T6228 1092-1096 NN denotes MRE2
T6229 1096-1098 , denotes ,
T6230 1098-1099 SYM denotes −
T6231 1099-1102 CD denotes 527
T6232 1105-1106 -RRB- denotes )
T6233 1106-1107 . denotes .
T6234 1107-1268 sentence denotes Specific binding of MTF-1 to Sepw1 MRE1 but not MRE2 oligonucleotide was observed in EMSA with liver protein extract from an Mtf1loxP control mouse (Figure 2d).
T6235 1108-1116 JJ denotes Specific
T6236 1117-1124 NN denotes binding
T6237 1181-1189 VBN denotes observed
T6238 1125-1127 IN denotes of
T6239 1128-1131 NN denotes MTF
T6240 1131-1132 HYPH denotes -
T6241 1132-1133 CD denotes 1
T6242 1134-1136 IN denotes to
T6243 1137-1142 NN denotes Sepw1
T6244 1161-1176 NN denotes oligonucleotide
T6245 1143-1147 NN denotes MRE1
T6246 1148-1151 CC denotes but
T6247 1152-1155 RB denotes not
T6248 1156-1160 NN denotes MRE2
T6249 1177-1180 VBD denotes was
T6250 1190-1192 IN denotes in
T6251 1193-1197 NN denotes EMSA
T6252 1198-1202 IN denotes with
T6253 1203-1208 NN denotes liver
T6254 1209-1216 NN denotes protein
T6255 1217-1224 NN denotes extract
T6256 1225-1229 IN denotes from
T6257 1230-1232 DT denotes an
T6258 1250-1255 NN denotes mouse
T6259 1233-1241 NN denotes Mtf1loxP
T6260 1242-1249 NN denotes control
T6261 1256-1257 -LRB- denotes (
T6262 1264-1266 NN denotes 2d
T6263 1257-1263 NN denotes Figure
T6264 1266-1267 -RRB- denotes )
T6265 1267-1268 . denotes .
T6266 1268-1443 sentence denotes As a control, no binding to MRE1 was detected with extract from a pI–pC-induced Mtf1Mx-cre mouse, confirming that the bandshift was indeed dependent on the presence of MTF-1.
T6267 1269-1271 IN denotes As
T6268 1306-1314 VBN denotes detected
T6269 1272-1273 DT denotes a
T6270 1274-1281 NN denotes control
T6271 1281-1283 , denotes ,
T6272 1283-1285 DT denotes no
T6273 1286-1293 NN denotes binding
T6274 1294-1296 IN denotes to
T6275 1297-1301 NN denotes MRE1
T6276 1302-1305 VBD denotes was
T6277 1315-1319 IN denotes with
T6278 1320-1327 NN denotes extract
T6279 1328-1332 IN denotes from
T6280 1333-1334 DT denotes a
T6281 1360-1365 NN denotes mouse
T6282 1335-1337 NN denotes pI
T6283 1338-1340 NN denotes pC
T6284 1337-1338 HYPH denotes –
T6285 1341-1348 VBN denotes induced
T6286 1340-1341 HYPH denotes -
T6287 1349-1355 NN denotes Mtf1Mx
T6288 1356-1359 NN denotes cre
T6289 1355-1356 HYPH denotes -
T6290 1365-1367 , denotes ,
T6291 1367-1377 VBG denotes confirming
T6292 1378-1382 IN denotes that
T6293 1397-1400 VBD denotes was
T6294 1383-1386 DT denotes the
T6295 1387-1396 NN denotes bandshift
T6296 1401-1407 RB denotes indeed
T6297 1408-1417 JJ denotes dependent
T6298 1418-1420 IN denotes on
T6299 1421-1424 DT denotes the
T6300 1425-1433 NN denotes presence
T6301 1434-1436 IN denotes of
T6302 1437-1440 NN denotes MTF
T6303 1440-1441 HYPH denotes -
T6304 1441-1442 CD denotes 1
T6305 1442-1443 . denotes .
R3916 T6000 T6001 amod Basal,expression
R3917 T6001 T6002 nsubj expression,depends
R3918 T6003 T6001 prep of,expression
R3919 T6004 T6003 pobj Sepw1,of
R3920 T6005 T6002 prep on,depends
R3921 T6006 T6005 pobj MTF,on
R3922 T6007 T6006 punct -,MTF
R3923 T6008 T6006 nummod 1,MTF
R3924 T6010 T6011 nsubjpass Sepw1,found
R3925 T6012 T6011 auxpass was,found
R3926 T6013 T6011 prep in,found
R3927 T6014 T6015 compound microarray,analysis
R3928 T6015 T6013 pobj analysis,in
R3929 T6016 T6017 aux to,be
R3930 T6017 T6011 xcomp be,found
R3931 T6018 T6017 advmod significantly,be
R3932 T6019 T6017 acomp downregulated,be
R3933 T6020 T6017 prep in,be
R3934 T6021 T6020 pobj livers,in
R3935 T6022 T6021 prep from,livers
R3936 T6023 T6024 npadvmod cadmium,treated
R3937 T6024 T6029 amod treated,mice
R3938 T6025 T6023 punct -,cadmium
R3939 T6026 T6023 cc and,cadmium
R3940 T6027 T6023 conj mock,cadmium
R3941 T6028 T6024 punct -,treated
R3942 T6029 T6022 pobj mice,from
R3943 T6030 T6031 compound Mtf1Mx,cre
R3944 T6031 T6029 compound cre,mice
R3945 T6032 T6031 punct -,cre
R3946 T6033 T6034 punct (,a
R3947 T6034 T6011 parataxis a,found
R3948 T6035 T6034 dep Table,a
R3949 T6036 T6035 nummod 1,Table
R3950 T6037 T6034 punct ", ",a
R3951 T6038 T6034 cc and,a
R3952 T6039 T6034 conj c,a
R3953 T6040 T6034 punct ),a
R3954 T6041 T6011 punct .,found
R3955 T6043 T6044 nsubj SEPW1,is
R3956 T6045 T6046 det a,protein
R3957 T6046 T6044 attr protein,is
R3958 T6047 T6048 npadvmod selenocysteine,containing
R3959 T6048 T6046 amod containing,protein
R3960 T6049 T6048 punct -,containing
R3961 T6050 T6051 dep that,binds
R3962 T6051 T6046 relcl binds,protein
R3963 T6052 T6051 dobj glutathione,binds
R3964 T6053 T6054 punct (,35
R3965 T6054 T6051 parataxis 35,binds
R3966 T6055 T6054 punct ),35
R3967 T6056 T6051 cc and,binds
R3968 T6057 T6058 auxpass is,thought
R3969 T6058 T6051 conj thought,binds
R3970 T6059 T6060 aux to,act
R3971 T6060 T6058 xcomp act,thought
R3972 T6061 T6060 prep as,act
R3973 T6062 T6063 det an,antioxidant
R3974 T6063 T6061 pobj antioxidant,as
R3975 T6064 T6065 advmod in,vivo
R3976 T6065 T6060 advmod vivo,act
R3977 T6066 T6067 punct (,36
R3978 T6067 T6058 parataxis 36,thought
R3979 T6068 T6067 punct ),36
R3980 T6069 T6044 punct .,is
R3981 T6071 T6072 compound Sepw1,expression
R3982 T6072 T6073 nsubjpass expression,analyzed
R3983 T6074 T6072 prep in,expression
R3984 T6075 T6074 pobj livers,in
R3985 T6076 T6075 prep of,livers
R3986 T6077 T6078 compound pI,pC
R3987 T6078 T6080 npadvmod pC,induced
R3988 T6079 T6078 punct –,pC
R3989 T6080 T6082 amod induced,mice
R3990 T6081 T6080 punct -,induced
R3992 T6083 T6082 punct ", ",mice
R3993 T6084 T6085 amod mock,treated
R3994 T6085 T6082 amod treated,mice
R3995 T6086 T6084 punct -,mock
R3996 T6087 T6084 cc or,mock
R3997 T6088 T6084 conj cadmium,mock
R3998 T6089 T6085 punct -,treated
R3999 T6090 T6091 nmod Mtf1Mx,cre
R4000 T6091 T6082 nmod cre,mice
R4001 T6092 T6091 punct -,cre
R4002 T6093 T6091 cc and,cre
R4003 T6094 T6091 conj Mtf1loxP,cre
R4004 T6095 T6073 auxpass was,analyzed
R4005 T6096 T6073 advmod further,analyzed
R4006 T6097 T6073 prep by,analyzed
R4007 T6098 T6099 amod semiquantitative,analysis
R4008 T6099 T6097 pobj analysis,by
R4009 T6100 T6101 nmod RT,PCRs
R4010 T6101 T6099 nmod PCRs,analysis
R4011 T6102 T6101 punct –,PCRs
R4012 T6103 T6101 cc and,PCRs
R4013 T6104 T6101 conj S1,PCRs
R4014 T6105 T6106 punct (,2a
R4015 T6106 T6073 parataxis 2a,analyzed
R4016 T6107 T6106 compound Figure,2a
R4017 T6108 T6106 cc and,2a
R4018 T6109 T6106 conj b,2a
R4019 T6110 T6106 punct ),2a
R4020 T6111 T6073 punct .,analyzed
R4021 T6113 T6114 prep In,observed
R4022 T6115 T6113 pobj accordance,In
R4023 T6116 T6115 prep with,accordance
R4024 T6117 T6118 compound microarray,data
R4025 T6118 T6116 pobj data,with
R4026 T6119 T6120 det a,upregulation
R4027 T6120 T6114 nsubjpass upregulation,observed
R4028 T6121 T6120 amod slight,upregulation
R4029 T6122 T6123 punct ", ",any
R4030 T6123 T6121 parataxis any,slight
R4031 T6124 T6123 mark if,any
R4032 T6125 T6123 punct ", ",any
R4033 T6126 T6120 prep of,upregulation
R4034 T6127 T6128 compound Sepw1,transcription
R4035 T6128 T6126 pobj transcription,of
R4036 T6129 T6114 auxpass was,observed
R4037 T6130 T6114 prep in,observed
R4038 T6131 T6130 pobj livers,in
R4039 T6132 T6131 prep from,livers
R4040 T6133 T6134 compound Mtf1loxP,mice
R4041 T6134 T6132 pobj mice,from
R4042 T6135 T6114 prep upon,observed
R4043 T6136 T6137 compound cadmium,treatment
R4044 T6137 T6135 pobj treatment,upon
R4045 T6138 T6114 punct .,observed
R4046 T6140 T6141 det The,level
R4047 T6141 T6143 nsubjpass level,reduced
R4048 T6142 T6141 amod basal,level
R4049 T6144 T6143 auxpass was,reduced
R4050 T6145 T6143 prep in,reduced
R4051 T6146 T6145 pobj livers,in
R4052 T6147 T6146 prep from,livers
R4053 T6148 T6149 amod mock,treated
R4054 T6149 T6154 amod treated,mice
R4055 T6150 T6148 punct -,mock
R4056 T6151 T6148 cc and,mock
R4057 T6152 T6148 conj cadmium,mock
R4058 T6153 T6149 punct -,treated
R4059 T6154 T6147 pobj mice,from
R4060 T6155 T6156 compound Mtf1Mx,cre
R4061 T6156 T6154 compound cre,mice
R4062 T6157 T6156 punct -,cre
R4063 T6158 T6143 punct ", ",reduced
R4064 T6159 T6143 advcl indicating,reduced
R4065 T6160 T6161 mark that,is
R4066 T6161 T6159 ccomp is,indicating
R4067 T6162 T6161 nsubj MTF,is
R4068 T6163 T6162 punct -,MTF
R4069 T6164 T6162 nummod 1,MTF
R4070 T6165 T6161 acomp important,is
R4071 T6166 T6165 prep for,important
R4072 T6167 T6168 det the,expression
R4073 T6168 T6166 pobj expression,for
R4074 T6169 T6168 amod basal,expression
R4075 T6170 T6168 prep of,expression
R4076 T6171 T6170 pobj Sepw1,of
R4077 T6172 T6143 punct .,reduced
R4078 T6174 T6175 nummod Three,sequences
R4079 T6175 T6179 nsubjpass sequences,found
R4080 T6176 T6175 compound MRE,sequences
R4081 T6177 T6178 compound core,consensus
R4082 T6178 T6175 compound consensus,sequences
R4083 T6180 T6179 auxpass were,found
R4084 T6181 T6179 prep in,found
R4085 T6182 T6183 det the,region
R4086 T6183 T6181 pobj region,in
R4087 T6184 T6183 advmod upstream,region
R4088 T6185 T6184 prep of,upstream
R4089 T6186 T6187 det the,start
R4090 T6187 T6185 pobj start,of
R4091 T6188 T6189 compound mouse,Sepw1
R4092 T6189 T6187 compound Sepw1,start
R4093 T6190 T6187 compound transcription,start
R4094 T6191 T6192 punct (,2c
R4095 T6192 T6179 parataxis 2c,found
R4096 T6193 T6192 compound Figure,2c
R4097 T6194 T6192 punct ),2c
R4098 T6195 T6179 punct .,found
R4099 T6197 T6198 nsubj Two,overlap
R4100 T6198 T6204 ccomp overlap,located
R4101 T6199 T6197 prep of,Two
R4102 T6200 T6199 pobj them,of
R4103 T6201 T6197 prep in,Two
R4104 T6202 T6203 amod opposite,orientation
R4105 T6203 T6201 pobj orientation,in
R4106 T6205 T6206 advmod almost,completely
R4107 T6206 T6207 advmod completely,proximal
R4108 T6207 T6198 advmod proximal,overlap
R4109 T6208 T6207 prep to,proximal
R4110 T6209 T6210 det the,start
R4111 T6210 T6208 pobj start,to
R4112 T6211 T6210 compound transcription,start
R4113 T6212 T6213 punct (,bp
R4114 T6213 T6198 parataxis bp,overlap
R4115 T6214 T6213 dep MRE1,bp
R4116 T6215 T6213 punct ", ",bp
R4117 T6216 T6217 punct −,40
R4118 T6217 T6213 nummod 40,bp
R4119 T6218 T6213 punct ),bp
R4120 T6219 T6204 punct ", ",located
R4121 T6220 T6221 det the,one
R4122 T6221 T6204 nsubjpass one,located
R4123 T6222 T6221 amod third,one
R4124 T6223 T6204 auxpass is,located
R4125 T6224 T6225 advmod further,upstream
R4126 T6225 T6204 advmod upstream,located
R4127 T6226 T6227 punct (,bp
R4128 T6227 T6204 parataxis bp,located
R4129 T6228 T6227 dep MRE2,bp
R4130 T6229 T6227 punct ", ",bp
R4131 T6230 T6231 punct −,527
R4132 T6231 T6227 nummod 527,bp
R4133 T6232 T6227 punct ),bp
R4134 T6233 T6204 punct .,located
R4135 T6235 T6236 amod Specific,binding
R4136 T6236 T6237 nsubjpass binding,observed
R4137 T6238 T6236 prep of,binding
R4138 T6239 T6238 pobj MTF,of
R4139 T6240 T6239 punct -,MTF
R4140 T6241 T6239 nummod 1,MTF
R4141 T6242 T6236 prep to,binding
R4142 T6243 T6244 nmod Sepw1,oligonucleotide
R4143 T6244 T6242 pobj oligonucleotide,to
R4144 T6245 T6244 nmod MRE1,oligonucleotide
R4145 T6246 T6245 cc but,MRE1
R4146 T6247 T6246 neg not,but
R4147 T6248 T6245 conj MRE2,MRE1
R4148 T6249 T6237 auxpass was,observed
R4149 T6250 T6237 prep in,observed
R4150 T6251 T6250 pobj EMSA,in
R4151 T6252 T6251 prep with,EMSA
R4152 T6253 T6254 compound liver,protein
R4153 T6254 T6255 compound protein,extract
R4154 T6255 T6252 pobj extract,with
R4155 T6256 T6255 prep from,extract
R4156 T6257 T6258 det an,mouse
R4157 T6258 T6256 pobj mouse,from
R4158 T6259 T6258 compound Mtf1loxP,mouse
R4159 T6260 T6258 compound control,mouse
R4160 T6261 T6262 punct (,2d
R4161 T6262 T6237 parataxis 2d,observed
R4162 T6263 T6262 compound Figure,2d
R4163 T6264 T6262 punct ),2d
R4164 T6265 T6237 punct .,observed
R4165 T6267 T6268 prep As,detected
R4166 T6269 T6270 det a,control
R4167 T6270 T6267 pobj control,As
R4168 T6271 T6268 punct ", ",detected
R4169 T6272 T6273 det no,binding
R4170 T6273 T6268 nsubjpass binding,detected
R4171 T6274 T6273 prep to,binding
R4172 T6275 T6274 pobj MRE1,to
R4173 T6276 T6268 auxpass was,detected
R4174 T6277 T6268 prep with,detected
R4175 T6278 T6277 pobj extract,with
R4176 T6279 T6278 prep from,extract
R4177 T6280 T6281 det a,mouse
R4178 T6281 T6279 pobj mouse,from
R4179 T6282 T6283 compound pI,pC
R4180 T6283 T6285 npadvmod pC,induced
R4181 T6284 T6283 punct –,pC
R4182 T6285 T6281 amod induced,mouse
R4183 T6286 T6285 punct -,induced
R4184 T6287 T6288 compound Mtf1Mx,cre
R4185 T6288 T6281 compound cre,mouse
R4186 T6289 T6288 punct -,cre
R4187 T6290 T6268 punct ", ",detected
R4188 T6291 T6268 advcl confirming,detected
R4189 T6292 T6293 mark that,was
R4190 T6293 T6291 ccomp was,confirming
R4191 T6294 T6295 det the,bandshift
R4192 T6295 T6293 nsubj bandshift,was
R4193 T6296 T6293 advmod indeed,was
R4194 T6297 T6293 acomp dependent,was
R4195 T6298 T6297 prep on,dependent
R4196 T6299 T6300 det the,presence
R4197 T6300 T6298 pobj presence,on
R4198 T6301 T6300 prep of,presence
R4199 T6302 T6301 pobj MTF,of
R4200 T6303 T6302 punct -,MTF
R4201 T6304 T6302 nummod 1,MTF
R4202 T6305 T6268 punct .,detected
R3991 T6082 T6076 pobj mice,of

2_test

Id Subject Object Predicate Lexical cue
16221973-8576706-77403431 262-264 8576706 denotes 35
16221973-12062442-77403432 315-317 12062442 denotes 36

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6306 6-16 GO:0010467 denotes expression
T6307 20-25 PR:000014662 denotes Sepw1
T6308 37-42 PR:000010717 denotes MTF-1
T6309 43-48 PR:000014662 denotes Sepw1
T6310 119-125 UBERON:0002107 denotes livers
T6311 157-161 PR:000010717 denotes Mtf1
T6312 161-163 PR:000010788 denotes Mx
T6313 168-172 NCBITaxon:10088 denotes mice
T6314 193-198 PR:000014662 denotes SEPW1
T6315 249-260 CHEBI:16856 denotes glutathione
T6316 320-325 PR:000014662 denotes Sepw1
T6317 326-336 GO:0010467 denotes expression
T6318 340-346 UBERON:0002107 denotes livers
T6319 350-352 CHEBI:76777 denotes pI
T6320 390-394 PR:000010717 denotes Mtf1
T6321 394-396 PR:000010788 denotes Mx
T6322 405-409 PR:000010717 denotes Mtf1
T6323 409-413 SO:0000346 denotes loxP
T6324 414-418 NCBITaxon:10088 denotes mice
T6325 472-474 PR:000025471 denotes S1
T6326 572-577 PR:000014662 denotes Sepw1
T6327 608-614 UBERON:0002107 denotes livers
T6328 620-624 PR:000010717 denotes Mtf1
T6329 624-628 SO:0000346 denotes loxP
T6330 629-633 NCBITaxon:10088 denotes mice
T6331 689-695 UBERON:0002107 denotes livers
T6332 727-731 PR:000010717 denotes Mtf1
T6333 731-733 PR:000010788 denotes Mx
T6334 738-742 NCBITaxon:10088 denotes mice
T6335 760-765 PR:000010717 denotes MTF-1
T6336 793-803 GO:0010467 denotes expression
T6337 807-812 PR:000014662 denotes Sepw1
T6338 829-838 SO:0000993 denotes consensus
T6339 890-895 NCBITaxon:10088 denotes mouse
T6340 896-901 PR:000014662 denotes Sepw1
T6341 1044-1046 SO:0000028 denotes bp
T6342 1103-1105 SO:0000028 denotes bp
T6343 1128-1133 PR:000010717 denotes MTF-1
T6344 1137-1142 PR:000014662 denotes Sepw1
T6345 1203-1208 UBERON:0002107 denotes liver
T6346 1233-1237 PR:000010717 denotes Mtf1
T6347 1237-1241 SO:0000346 denotes loxP
T6348 1250-1255 NCBITaxon:10088 denotes mouse
T6349 1335-1337 CHEBI:76777 denotes pI
T6350 1349-1353 PR:000010717 denotes Mtf1
T6351 1353-1355 PR:000010788 denotes Mx
T6352 1360-1365 NCBITaxon:10088 denotes mouse
T6353 1437-1442 PR:000010717 denotes MTF-1

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6354 6-16 GO:0010467 denotes expression
T6355 20-25 PR_EXT:000014662 denotes Sepw1
T6356 37-42 PR_EXT:000010717 denotes MTF-1
T6357 43-48 PR_EXT:000014662 denotes Sepw1
T6358 102-115 GO_EXT:negative_regulation denotes downregulated
T6359 119-125 UBERON:0002107 denotes livers
T6360 131-138 CHEBI_EXT:cadmium denotes cadmium
T6361 157-161 PR_EXT:000010717 denotes Mtf1
T6362 161-163 PR_EXT:000010788 denotes Mx
T6363 168-172 NCBITaxon:10088 denotes mice
T6364 193-198 PR_EXT:000014662 denotes SEPW1
T6365 204-218 CHEBI_SO_EXT:selenocysteine denotes selenocysteine
T6366 230-237 CHEBI_PR_EXT:protein denotes protein
T6367 243-248 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T6368 249-260 CHEBI:16856 denotes glutathione
T6369 294-305 CHEBI_GO_EXT:antioxidant denotes antioxidant
T6370 298-305 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T6371 320-325 PR_EXT:000014662 denotes Sepw1
T6372 326-336 GO:0010467 denotes expression
T6373 340-346 UBERON:0002107 denotes livers
T6374 350-352 CHEBI:76777 denotes pI
T6375 353-355 CHEBI_EXT:polyC_acid denotes pC
T6376 374-381 CHEBI_EXT:cadmium denotes cadmium
T6377 390-394 PR_EXT:000010717 denotes Mtf1
T6378 394-396 PR_EXT:000010788 denotes Mx
T6379 405-409 PR_EXT:000010717 denotes Mtf1
T6380 409-413 SO_EXT:0000346 denotes loxP
T6381 414-418 NCBITaxon:10088 denotes mice
T6382 460-462 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T6383 472-474 PR_EXT:000025471 denotes S1
T6384 556-568 GO_EXT:positive_regulation denotes upregulation
T6385 572-577 PR_EXT:000014662 denotes Sepw1
T6386 578-591 GO_EXT:transcription denotes transcription
T6387 608-614 UBERON:0002107 denotes livers
T6388 620-624 PR_EXT:000010717 denotes Mtf1
T6389 624-628 SO_EXT:0000346 denotes loxP
T6390 629-633 NCBITaxon:10088 denotes mice
T6391 639-646 CHEBI_EXT:cadmium denotes cadmium
T6392 689-695 UBERON:0002107 denotes livers
T6393 711-718 CHEBI_EXT:cadmium denotes cadmium
T6394 727-731 PR_EXT:000010717 denotes Mtf1
T6395 731-733 PR_EXT:000010788 denotes Mx
T6396 738-742 NCBITaxon:10088 denotes mice
T6397 760-765 PR_EXT:000010717 denotes MTF-1
T6398 793-803 GO:0010467 denotes expression
T6399 807-812 PR_EXT:000014662 denotes Sepw1
T6400 829-838 SO:0000993 denotes consensus
T6401 839-848 SO_EXT:biological_sequence denotes sequences
T6402 874-882 SO_EXT:sequence_upstreamness denotes upstream
T6403 890-895 NCBITaxon:10088 denotes mouse
T6404 896-901 PR_EXT:000014662 denotes Sepw1
T6405 902-921 GO_SO_EXT:transcriptional_start_entity_or_process denotes transcription start
T6406 1013-1032 GO_SO_EXT:transcriptional_start_entity_or_process denotes transcription start
T6407 1044-1046 SO_EXT:0000028 denotes bp
T6408 1082-1090 SO_EXT:sequence_upstreamness denotes upstream
T6409 1103-1105 SO_EXT:0000028 denotes bp
T6410 1117-1124 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T6411 1128-1133 PR_EXT:000010717 denotes MTF-1
T6412 1137-1142 PR_EXT:000014662 denotes Sepw1
T6413 1161-1176 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotide
T6414 1203-1208 UBERON:0002107 denotes liver
T6415 1209-1216 CHEBI_PR_EXT:protein denotes protein
T6416 1233-1237 PR_EXT:000010717 denotes Mtf1
T6417 1237-1241 SO_EXT:0000346 denotes loxP
T6418 1250-1255 NCBITaxon:10088 denotes mouse
T6419 1286-1293 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T6420 1335-1337 CHEBI:76777 denotes pI
T6421 1338-1340 CHEBI_EXT:polyC_acid denotes pC
T6422 1349-1353 PR_EXT:000010717 denotes Mtf1
T6423 1353-1355 PR_EXT:000010788 denotes Mx
T6424 1360-1365 NCBITaxon:10088 denotes mouse
T6425 1437-1442 PR_EXT:000010717 denotes MTF-1