> top > docs > PMC:1208879 > spans > 9961-11363 > annotations

PMC:1208879 / 9961-11363 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T2839 0-17 JJ denotes Semi-quantitative
T2840 18-21 NN denotes PCR
T2841 21-206 sentence denotes To check that the Homer3, Dncl1 and Trim11 clones were not identified multiple times solely because they are highly abundant in the library, we performed a semi-quantitative PCR assay.
T2842 22-24 TO denotes To
T2843 25-30 VB denotes check
T2844 166-175 VBD denotes performed
T2845 31-35 IN denotes that
T2846 81-91 VBN denotes identified
T2847 36-39 DT denotes the
T2848 65-71 NNS denotes clones
T2849 40-46 NN denotes Homer3
T2850 46-48 , denotes ,
T2851 48-53 NN denotes Dncl1
T2852 54-57 CC denotes and
T2853 58-64 NN denotes Trim11
T2854 72-76 VBD denotes were
T2855 77-80 RB denotes not
T2856 92-100 JJ denotes multiple
T2857 101-106 NNS denotes times
T2858 107-113 RB denotes solely
T2859 127-130 VBP denotes are
T2860 114-121 IN denotes because
T2861 122-126 PRP denotes they
T2862 131-137 RB denotes highly
T2863 138-146 JJ denotes abundant
T2864 147-149 IN denotes in
T2865 150-153 DT denotes the
T2866 154-161 NN denotes library
T2867 161-163 , denotes ,
T2868 163-165 PRP denotes we
T2869 176-177 DT denotes a
T2870 200-205 NN denotes assay
T2871 178-195 JJ denotes semi-quantitative
T2872 196-199 NN denotes PCR
T2873 205-206 . denotes .
T2874 206-298 sentence denotes We compared the relative abundance of Homer3, Dncl1, Trim11 and Pax6 with Gapdh and Atp5a1.
T2875 207-209 PRP denotes We
T2876 210-218 VBD denotes compared
T2877 219-222 DT denotes the
T2878 232-241 NN denotes abundance
T2879 223-231 JJ denotes relative
T2880 242-244 IN denotes of
T2881 245-251 NN denotes Homer3
T2882 251-253 , denotes ,
T2883 253-258 NN denotes Dncl1
T2884 258-260 , denotes ,
T2885 260-266 NN denotes Trim11
T2886 267-270 CC denotes and
T2887 271-275 NN denotes Pax6
T2888 276-280 IN denotes with
T2889 281-286 NN denotes Gapdh
T2890 287-290 CC denotes and
T2891 291-297 NN denotes Atp5a1
T2892 297-298 . denotes .
T2893 298-409 sentence denotes Gapdh and Atp5a1 both show strong constitutive expression in a variety of tissues including the brain [29,30].
T2894 299-304 NN denotes Gapdh
T2895 321-325 VBP denotes show
T2896 305-308 CC denotes and
T2897 309-315 NN denotes Atp5a1
T2898 316-320 DT denotes both
T2899 326-332 JJ denotes strong
T2900 346-356 NN denotes expression
T2901 333-345 JJ denotes constitutive
T2902 357-359 IN denotes in
T2903 360-361 DT denotes a
T2904 362-369 NN denotes variety
T2905 370-372 IN denotes of
T2906 373-380 NNS denotes tissues
T2907 381-390 VBG denotes including
T2908 391-394 DT denotes the
T2909 395-400 NN denotes brain
T2910 401-402 -LRB- denotes [
T2911 405-407 CD denotes 30
T2912 402-404 CD denotes 29
T2913 404-405 , denotes ,
T2914 407-408 -RRB- denotes ]
T2915 408-409 . denotes .
T2916 409-669 sentence denotes Homer3, Dncl1, Trim11 and Pax6 were only amplified strongly after 35 cycles of PCR (Figure 2) and were therefore present at relatively low levels compared to Gapdh (amplified strongly after 25 cycles) and Atp5a1 (amplified strongly after 30 cycles; Figure 2).
T2917 410-416 NN denotes Homer3
T2918 451-460 VBN denotes amplified
T2919 416-418 , denotes ,
T2920 418-423 NN denotes Dncl1
T2921 423-425 , denotes ,
T2922 425-431 NN denotes Trim11
T2923 432-435 CC denotes and
T2924 436-440 NN denotes Pax6
T2925 441-445 VBD denotes were
T2926 446-450 RB denotes only
T2927 461-469 RB denotes strongly
T2928 470-475 IN denotes after
T2929 476-478 CD denotes 35
T2930 479-485 NNS denotes cycles
T2931 486-488 IN denotes of
T2932 489-492 NN denotes PCR
T2933 493-494 -LRB- denotes (
T2934 494-500 NN denotes Figure
T2935 501-502 CD denotes 2
T2936 502-503 -RRB- denotes )
T2937 504-507 CC denotes and
T2938 508-512 VBD denotes were
T2939 513-522 RB denotes therefore
T2940 523-530 JJ denotes present
T2941 531-533 IN denotes at
T2942 534-544 RB denotes relatively
T2943 545-548 JJ denotes low
T2944 549-555 NNS denotes levels
T2945 556-564 VBN denotes compared
T3000 1309-1312 DT denotes the
T3001 1321-1329 NN denotes proteins
T3002 1313-1320 VBN denotes encoded
T3003 1339-1351 RB denotes specifically
T3004 1352-1356 IN denotes with
T3005 1357-1360 DT denotes the
T3006 1372-1379 NN denotes peptide
T3007 1361-1362 NN denotes C
T3008 1363-1371 JJ denotes terminal
T3009 1362-1363 HYPH denotes -
T3010 1380-1382 CC denotes or
T3011 1383-1386 NN denotes PST
T3012 1387-1393 NN denotes domain
T3013 1394-1396 IN denotes of
T3014 1397-1401 NN denotes PAX6
T3015 1401-1402 . denotes .
T8468 680-697 JJ denotes Semi-quantitative
T8469 702-710 NN denotes analysis
T8470 698-701 NN denotes PCR
T8471 711-713 IN denotes of
T8472 714-720 NN denotes Homer3
T8473 720-722 , denotes ,
T8474 722-727 NN denotes Dncl1
T8475 727-729 , denotes ,
T8476 729-735 NN denotes Trim11
T8477 736-739 CC denotes and
T8478 740-744 NN denotes Pax6
T8479 745-747 IN denotes in
T8480 748-751 DT denotes the
T8481 769-776 NN denotes library
T8482 752-757 NN denotes mouse
T8483 758-763 NN denotes brain
T8484 764-768 NN denotes cDNA
T8485 776-777 . denotes .
T8486 777-931 sentence denotes Library cDNA was amplified with primers specific for Pax6 (600 bp), Homer3 (485 bp band), Dncl1 (485 bp) and Trim11 (609 bp) for 20, 25, 30 or 35 cycles.
T8487 778-785 NN denotes Library
T8488 786-790 NN denotes cDNA
T8489 795-804 VBN denotes amplified
T8490 791-794 VBD denotes was
T8491 805-809 IN denotes with
T8492 810-817 NNS denotes primers
T8493 818-826 JJ denotes specific
T8494 827-830 IN denotes for
T8495 831-835 NN denotes Pax6
T8496 836-837 -LRB- denotes (
T8497 841-843 NN denotes bp
T8498 837-840 CD denotes 600
T8499 843-844 -RRB- denotes )
T8500 844-846 , denotes ,
T8501 846-852 NN denotes Homer3
T8502 853-854 -LRB- denotes (
T8503 861-865 NN denotes band
T8504 854-857 CD denotes 485
T8505 858-860 NN denotes bp
T8506 865-866 -RRB- denotes )
T8507 866-868 , denotes ,
T8508 868-873 NN denotes Dncl1
T8509 874-875 -LRB- denotes (
T8510 879-881 NN denotes bp
T8511 875-878 CD denotes 485
T8512 881-882 -RRB- denotes )
T8513 883-886 CC denotes and
T8514 887-893 NN denotes Trim11
T8515 894-895 -LRB- denotes (
T8516 899-901 NN denotes bp
T8517 895-898 CD denotes 609
T8518 901-902 -RRB- denotes )
T8519 903-906 IN denotes for
T8520 907-909 CD denotes 20
T8521 924-930 NNS denotes cycles
T8522 909-911 , denotes ,
T8523 911-913 CD denotes 25
T8524 913-915 , denotes ,
T8525 915-917 CD denotes 30
T8526 918-920 CC denotes or
T8527 921-923 CD denotes 35
T8528 930-931 . denotes .
T8529 931-1037 sentence denotes Atp5a1 (415 bp) and Gapdh (450 bp), which are highly expressed in the brain, are included for comparison.
T8530 932-938 NN denotes Atp5a1
T8531 1013-1021 VBN denotes included
T8532 939-940 -LRB- denotes (
T8533 944-946 NN denotes bp
T8534 940-943 CD denotes 415
T8535 946-947 -RRB- denotes )
T8536 948-951 CC denotes and
T8537 952-957 NN denotes Gapdh
T8538 958-959 -LRB- denotes (
T8539 963-965 NN denotes bp
T8540 959-962 CD denotes 450
T8541 965-966 -RRB- denotes )
T8542 966-968 , denotes ,
T8543 968-973 WDT denotes which
T8544 985-994 VBN denotes expressed
T8545 974-977 VBP denotes are
T8546 978-984 RB denotes highly
T8547 995-997 IN denotes in
T8548 998-1001 DT denotes the
T8549 1002-1007 NN denotes brain
T8550 1007-1009 , denotes ,
T8551 1009-1012 VBP denotes are
T8552 1022-1025 IN denotes for
T8553 1026-1036 NN denotes comparison
T8554 1036-1037 . denotes .
T8555 1037-1150 sentence denotes M indicates the Φ×174 HaeIII DNA size marker; the positions of the 603 bp and 310 bp marker bands are indicated.
T8556 1038-1039 NN denotes M
T8557 1040-1049 VBZ denotes indicates
T8558 1140-1149 VBN denotes indicated
T8559 1050-1053 DT denotes the
T8560 1076-1082 NN denotes marker
T8561 1054-1056 NN denotes Φ×
T8562 1060-1066 NN denotes HaeIII
T8563 1056-1059 CD denotes 174
T8564 1067-1070 NN denotes DNA
T8565 1071-1075 NN denotes size
T8566 1082-1083 : denotes ;
T8567 1084-1087 DT denotes the
T8568 1088-1097 NNS denotes positions
T8569 1098-1100 IN denotes of
T8570 1101-1104 DT denotes the
T8571 1130-1135 NNS denotes bands
T8572 1105-1108 CD denotes 603
T8573 1109-1111 NN denotes bp
T8574 1112-1115 CC denotes and
T8575 1116-1119 CD denotes 310
T8576 1120-1122 NN denotes bp
T8577 1123-1129 NN denotes marker
T8578 1136-1139 VBP denotes are
T8579 1149-1150 . denotes .
T2946 565-567 IN denotes to
T2947 568-573 NN denotes Gapdh
T2948 574-575 -LRB- denotes (
T2949 575-584 VBN denotes amplified
T2950 585-593 RB denotes strongly
T2951 594-599 IN denotes after
T2952 600-602 CD denotes 25
T2953 603-609 NNS denotes cycles
T2954 609-610 -RRB- denotes )
T2955 611-614 CC denotes and
T2956 615-621 NN denotes Atp5a1
T2957 622-623 -LRB- denotes (
T2958 623-632 VBN denotes amplified
T2959 633-641 RB denotes strongly
T2960 642-647 IN denotes after
T2961 648-650 CD denotes 30
T2962 651-657 NNS denotes cycles
T2963 657-658 : denotes ;
T2964 659-665 NN denotes Figure
T2965 666-667 CD denotes 2
T2966 667-668 -RRB- denotes )
T2967 668-669 . denotes .
T2968 669-1241 sentence denotes Figure 2 Semi-quantitative PCR analysis of Homer3, Dncl1, Trim11 and Pax6 in the mouse brain cDNA library. Library cDNA was amplified with primers specific for Pax6 (600 bp), Homer3 (485 bp band), Dncl1 (485 bp) and Trim11 (609 bp) for 20, 25, 30 or 35 cycles. Atp5a1 (415 bp) and Gapdh (450 bp), which are highly expressed in the brain, are included for comparison. M indicates the Φ×174 HaeIII DNA size marker; the positions of the 603 bp and 310 bp marker bands are indicated. We concluded that Homer3, Dncl1 and Trim11 clones were not highly abundant in the library.
T2969 1151-1153 PRP denotes We
T2970 1154-1163 VBD denotes concluded
T2971 1164-1168 IN denotes that
T2972 1201-1205 VBD denotes were
T2973 1169-1175 NN denotes Homer3
T2974 1194-1200 NNS denotes clones
T2975 1175-1177 , denotes ,
T2976 1177-1182 NN denotes Dncl1
T2977 1183-1186 CC denotes and
T2978 1187-1193 NN denotes Trim11
T2979 1206-1209 RB denotes not
T2980 1210-1216 RB denotes highly
T2981 1217-1225 JJ denotes abundant
T2982 1226-1228 IN denotes in
T2983 1229-1232 DT denotes the
T2984 1233-1240 NN denotes library
T2985 1240-1241 . denotes .
T2986 1241-1402 sentence denotes This is consistent with the idea that they were pulled out because the encoded proteins interact specifically with the C-terminal peptide or PST domain of PAX6.
T2987 1242-1246 DT denotes This
T2988 1247-1249 VBZ denotes is
T2989 1250-1260 JJ denotes consistent
T2990 1261-1265 IN denotes with
T2991 1266-1269 DT denotes the
T2992 1270-1274 NN denotes idea
T2993 1275-1279 IN denotes that
T2994 1290-1296 VBN denotes pulled
T2995 1280-1284 PRP denotes they
T2996 1285-1289 VBD denotes were
T2997 1297-1300 RP denotes out
T2998 1301-1308 IN denotes because
T2999 1330-1338 VBP denotes interact
R1747 T2839 T2840 amod Semi-quantitative,PCR
R1748 T2842 T2843 aux To,check
R1749 T2843 T2844 advcl check,performed
R1750 T2845 T2846 mark that,identified
R1751 T2846 T2843 ccomp identified,check
R1752 T2847 T2848 det the,clones
R1753 T2848 T2846 nsubjpass clones,identified
R1754 T2849 T2848 nmod Homer3,clones
R1755 T2850 T2849 punct ", ",Homer3
R1756 T2851 T2849 conj Dncl1,Homer3
R1757 T2852 T2851 cc and,Dncl1
R1758 T2853 T2851 conj Trim11,Dncl1
R1759 T2854 T2846 auxpass were,identified
R1760 T2855 T2846 neg not,identified
R1761 T2856 T2857 amod multiple,times
R1762 T2857 T2846 npadvmod times,identified
R1763 T2858 T2859 advmod solely,are
R1764 T2859 T2846 advcl are,identified
R1765 T2860 T2859 mark because,are
R1766 T2861 T2859 nsubj they,are
R1767 T2862 T2863 advmod highly,abundant
R1768 T2863 T2859 acomp abundant,are
R1769 T2864 T2859 prep in,are
R1770 T2865 T2866 det the,library
R1771 T2866 T2864 pobj library,in
R1772 T2867 T2844 punct ", ",performed
R1773 T2868 T2844 nsubj we,performed
R1774 T2869 T2870 det a,assay
R1775 T2870 T2844 dobj assay,performed
R1776 T2871 T2870 amod semi-quantitative,assay
R1777 T2872 T2870 compound PCR,assay
R1778 T2873 T2844 punct .,performed
R1779 T2875 T2876 nsubj We,compared
R1780 T2877 T2878 det the,abundance
R1781 T2878 T2876 dobj abundance,compared
R1782 T2879 T2878 amod relative,abundance
R1783 T2880 T2878 prep of,abundance
R1784 T2881 T2880 pobj Homer3,of
R1785 T2882 T2881 punct ", ",Homer3
R1786 T2883 T2881 conj Dncl1,Homer3
R1787 T2884 T2883 punct ", ",Dncl1
R1788 T2885 T2883 conj Trim11,Dncl1
R1789 T2886 T2885 cc and,Trim11
R1790 T2887 T2885 conj Pax6,Trim11
R1791 T2888 T2876 prep with,compared
R1792 T2889 T2888 pobj Gapdh,with
R1793 T2890 T2889 cc and,Gapdh
R1794 T2891 T2889 conj Atp5a1,Gapdh
R1795 T2892 T2876 punct .,compared
R1796 T2894 T2895 nsubj Gapdh,show
R1797 T2896 T2894 cc and,Gapdh
R1798 T2897 T2894 conj Atp5a1,Gapdh
R1799 T2898 T2894 appos both,Gapdh
R1800 T2899 T2900 amod strong,expression
R1801 T2900 T2895 dobj expression,show
R1802 T2901 T2900 amod constitutive,expression
R1803 T2902 T2895 prep in,show
R1804 T2903 T2904 det a,variety
R1805 T2904 T2902 pobj variety,in
R1806 T2905 T2904 prep of,variety
R1807 T2906 T2905 pobj tissues,of
R1808 T2907 T2906 prep including,tissues
R1809 T2908 T2909 det the,brain
R1810 T2909 T2907 pobj brain,including
R1811 T2910 T2911 punct [,30
R1812 T2911 T2895 parataxis 30,show
R1813 T2912 T2911 nummod 29,30
R1814 T2913 T2911 punct ",",30
R1844 T2945 T2938 prep compared,were
R1845 T2946 T2945 prep to,compared
R1846 T2947 T2946 pobj Gapdh,to
R1847 T2948 T2947 punct (,Gapdh
R1848 T2949 T2947 acl amplified,Gapdh
R1849 T2950 T2949 advmod strongly,amplified
R1850 T2951 T2949 prep after,amplified
R1851 T2952 T2953 nummod 25,cycles
R1852 T2953 T2951 pobj cycles,after
R1853 T2954 T2947 punct ),Gapdh
R1854 T2955 T2947 cc and,Gapdh
R1855 T2956 T2947 conj Atp5a1,Gapdh
R1856 T2957 T2956 punct (,Atp5a1
R1857 T2958 T2956 acl amplified,Atp5a1
R1858 T2959 T2958 advmod strongly,amplified
R1859 T2960 T2958 prep after,amplified
R1860 T2961 T2962 nummod 30,cycles
R1861 T2962 T2960 pobj cycles,after
R1862 T2963 T2964 punct ;,Figure
R1863 T2964 T2938 parataxis Figure,were
R1864 T2965 T2964 nummod 2,Figure
R1865 T2966 T2964 punct ),Figure
R1866 T2967 T2918 punct .,amplified
R1869 T2972 T2970 ccomp were,concluded
R1871 T2974 T2972 nsubj clones,were
R1873 T2976 T2973 conj Dncl1,Homer3
R1874 T2977 T2976 cc and,Dncl1
R1875 T2978 T2976 conj Trim11,Dncl1
R1876 T2979 T2972 neg not,were
R1877 T2980 T2981 advmod highly,abundant
R1878 T2981 T2972 acomp abundant,were
R1879 T2982 T2972 prep in,were
R1880 T2983 T2984 det the,library
R1881 T2984 T2982 pobj library,in
R1882 T2985 T2970 punct .,concluded
R1883 T2987 T2988 nsubj This,is
R1884 T2989 T2988 acomp consistent,is
R1885 T2990 T2989 prep with,consistent
R1886 T2991 T2992 det the,idea
R1887 T2992 T2990 pobj idea,with
R1888 T2993 T2994 mark that,pulled
R1889 T2994 T2992 acl pulled,idea
R1890 T2995 T2994 nsubjpass they,pulled
R1891 T2996 T2994 auxpass were,pulled
R1892 T2997 T2994 prt out,pulled
R1893 T2998 T2999 mark because,interact
R1894 T2999 T2994 advcl interact,pulled
R1895 T3000 T3001 det the,proteins
R1896 T3001 T2999 nsubj proteins,interact
R1897 T3002 T3001 amod encoded,proteins
R1898 T3003 T2999 advmod specifically,interact
R1899 T3004 T2999 prep with,interact
R1900 T3005 T3006 det the,peptide
R1901 T3006 T3004 pobj peptide,with
R1902 T3007 T3008 npadvmod C,terminal
R1903 T3008 T3006 amod terminal,peptide
R1904 T3009 T3008 punct -,terminal
R1905 T3010 T3006 cc or,peptide
R1906 T3011 T3012 compound PST,domain
R1907 T3012 T3006 conj domain,peptide
R1908 T3013 T3012 prep of,domain
R1909 T3014 T3013 pobj PAX6,of
R1910 T3015 T2988 punct .,is
R5394 T8468 T8469 amod Semi-quantitative,analysis
R5395 T8470 T8469 compound PCR,analysis
R5396 T8471 T8469 prep of,analysis
R5397 T8472 T8471 pobj Homer3,of
R5398 T8473 T8472 punct ", ",Homer3
R5399 T8474 T8472 conj Dncl1,Homer3
R5400 T8475 T8474 punct ", ",Dncl1
R5401 T8476 T8474 conj Trim11,Dncl1
R5402 T8477 T8476 cc and,Trim11
R5403 T8478 T8476 conj Pax6,Trim11
R5404 T8479 T8469 prep in,analysis
R5405 T8480 T8481 det the,library
R5406 T8481 T8479 pobj library,in
R5407 T8482 T8483 compound mouse,brain
R5408 T8483 T8481 compound brain,library
R5409 T8484 T8481 compound cDNA,library
R5410 T8485 T8469 punct .,analysis
R5411 T8487 T8488 compound Library,cDNA
R5412 T8488 T8489 nsubjpass cDNA,amplified
R5413 T8490 T8489 auxpass was,amplified
R5414 T8491 T8489 prep with,amplified
R5415 T8492 T8491 pobj primers,with
R5416 T8493 T8492 amod specific,primers
R5417 T8494 T8493 prep for,specific
R5418 T8495 T8494 pobj Pax6,for
R5419 T8496 T8497 punct (,bp
R5420 T8497 T8495 parataxis bp,Pax6
R5421 T8498 T8497 nummod 600,bp
R5422 T8499 T8497 punct ),bp
R5423 T8500 T8495 punct ", ",Pax6
R5424 T8501 T8495 conj Homer3,Pax6
R5425 T8502 T8503 punct (,band
R5426 T8503 T8501 parataxis band,Homer3
R5427 T8504 T8505 nummod 485,bp
R5428 T8505 T8503 compound bp,band
R5429 T8506 T8503 punct ),band
R5430 T8507 T8501 punct ", ",Homer3
R5431 T8508 T8501 conj Dncl1,Homer3
R5432 T8509 T8510 punct (,bp
R5433 T8510 T8508 parataxis bp,Dncl1
R5434 T8511 T8510 nummod 485,bp
R5435 T8512 T8510 punct ),bp
R5436 T8513 T8508 cc and,Dncl1
R5437 T8514 T8508 conj Trim11,Dncl1
R5438 T8515 T8516 punct (,bp
R5439 T8516 T8514 parataxis bp,Trim11
R5440 T8517 T8516 nummod 609,bp
R5441 T8518 T8516 punct ),bp
R5442 T8519 T8489 prep for,amplified
R5443 T8520 T8521 nummod 20,cycles
R5444 T8521 T8519 pobj cycles,for
R5445 T8522 T8520 punct ", ",20
R5446 T8523 T8520 conj 25,20
R5447 T8524 T8523 punct ", ",25
R5448 T8525 T8523 conj 30,25
R5449 T8526 T8525 cc or,30
R5450 T8527 T8525 conj 35,30
R5451 T8528 T8489 punct .,amplified
R5452 T8530 T8531 nsubjpass Atp5a1,included
R5453 T8532 T8533 punct (,bp
R5454 T8533 T8530 parataxis bp,Atp5a1
R5455 T8534 T8533 nummod 415,bp
R5456 T8535 T8533 punct ),bp
R5457 T8536 T8530 cc and,Atp5a1
R5458 T8537 T8530 conj Gapdh,Atp5a1
R5459 T8538 T8539 punct (,bp
R5460 T8539 T8537 parataxis bp,Gapdh
R5461 T8540 T8539 nummod 450,bp
R5462 T8541 T8539 punct ),bp
R5463 T8542 T8530 punct ", ",Atp5a1
R5464 T8543 T8544 dep which,expressed
R5465 T8544 T8530 relcl expressed,Atp5a1
R5466 T8545 T8544 auxpass are,expressed
R5467 T8546 T8544 advmod highly,expressed
R5468 T8547 T8544 prep in,expressed
R5469 T8548 T8549 det the,brain
R5470 T8549 T8547 pobj brain,in
R5471 T8550 T8531 punct ", ",included
R5472 T8551 T8531 auxpass are,included
R5473 T8552 T8531 prep for,included
R5474 T8553 T8552 pobj comparison,for
R5475 T8554 T8531 punct .,included
R5476 T8556 T8557 nsubj M,indicates
R5477 T8557 T8558 ccomp indicates,indicated
R5478 T8559 T8560 det the,marker
R5479 T8560 T8557 dobj marker,indicates
R5480 T8561 T8562 nmod Φ×,HaeIII
R5481 T8562 T8560 compound HaeIII,marker
R5482 T8563 T8562 nummod 174,HaeIII
R5483 T8564 T8565 compound DNA,size
R5484 T8565 T8560 compound size,marker
R5485 T8566 T8558 punct ;,indicated
R5486 T8567 T8568 det the,positions
R5487 T8568 T8558 nsubjpass positions,indicated
R5488 T8569 T8568 prep of,positions
R5489 T8570 T8571 det the,bands
R5490 T8571 T8569 pobj bands,of
R5491 T8572 T8573 nummod 603,bp
R5492 T8573 T8571 nmod bp,bands
R5493 T8574 T8573 cc and,bp
R5494 T8575 T8576 nummod 310,bp
R5495 T8576 T8573 conj bp,bp
R5496 T8577 T8571 compound marker,bands
R5497 T8578 T8558 auxpass are,indicated
R5498 T8579 T8558 punct .,indicated
R1815 T2914 T2911 punct ],30
R1816 T2915 T2895 punct .,show
R1817 T2917 T2918 nsubjpass Homer3,amplified
R1818 T2919 T2917 punct ", ",Homer3
R1819 T2920 T2917 conj Dncl1,Homer3
R1820 T2921 T2920 punct ", ",Dncl1
R1821 T2922 T2920 conj Trim11,Dncl1
R1822 T2923 T2922 cc and,Trim11
R1823 T2924 T2922 conj Pax6,Trim11
R1824 T2925 T2918 auxpass were,amplified
R1825 T2926 T2918 advmod only,amplified
R1826 T2927 T2918 advmod strongly,amplified
R1827 T2928 T2918 prep after,amplified
R1828 T2929 T2930 nummod 35,cycles
R1829 T2930 T2928 pobj cycles,after
R1830 T2931 T2930 prep of,cycles
R1831 T2932 T2931 pobj PCR,of
R1832 T2933 T2934 punct (,Figure
R1833 T2934 T2918 parataxis Figure,amplified
R1834 T2935 T2934 nummod 2,Figure
R1835 T2936 T2934 punct ),Figure
R1836 T2937 T2918 cc and,amplified
R1837 T2938 T2918 conj were,amplified
R1838 T2939 T2938 advmod therefore,were
R1839 T2940 T2938 acomp present,were
R1840 T2941 T2940 prep at,present
R1841 T2942 T2943 advmod relatively,low
R1842 T2943 T2944 amod low,levels
R1843 T2944 T2941 pobj levels,at
R1867 T2969 T2970 nsubj We,concluded
R1868 T2971 T2972 mark that,were
R1870 T2973 T2974 nmod Homer3,clones
R1872 T2975 T2973 punct ", ",Homer3

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2808 40-46 PR_EXT:000008680 denotes Homer3
T2809 48-53 PR_EXT:000002325 denotes Dncl1
T2810 58-64 PR_EXT:000016642 denotes Trim11
T2811 65-71 SO_EXT:sequence_cloned_entity denotes clones
T2812 245-251 PR_EXT:000008680 denotes Homer3
T2813 253-258 PR_EXT:000002325 denotes Dncl1
T2814 260-266 PR_EXT:000016642 denotes Trim11
T2815 271-275 PR_EXT:000012318 denotes Pax6
T2816 281-286 GO_PR_EXT:glyceraldehyde_3_phosphate_dehydrogenase denotes Gapdh
T8439 714-720 PR_EXT:000008680 denotes Homer3
T8440 722-727 PR_EXT:000002325 denotes Dncl1
T8441 729-735 PR_EXT:000016642 denotes Trim11
T8442 740-744 PR_EXT:000012318 denotes Pax6
T8443 752-757 NCBITaxon:10088 denotes mouse
T8444 758-763 UBERON:0000955 denotes brain
T8445 764-768 SO_EXT:cDNA denotes cDNA
T8446 786-790 SO_EXT:cDNA denotes cDNA
T8447 810-817 SO_EXT:0000112 denotes primers
T8448 831-835 PR_EXT:000012318 denotes Pax6
T8449 841-843 SO_EXT:0000028 denotes bp
T8450 846-852 PR_EXT:000008680 denotes Homer3
T8451 858-860 SO_EXT:0000028 denotes bp
T8452 868-873 PR_EXT:000002325 denotes Dncl1
T8453 879-881 SO_EXT:0000028 denotes bp
T8454 887-893 PR_EXT:000016642 denotes Trim11
T8455 899-901 SO_EXT:0000028 denotes bp
T8456 932-938 PR_EXT:000004453 denotes Atp5a1
T8457 944-946 SO_EXT:0000028 denotes bp
T8458 952-957 GO_PR_EXT:glyceraldehyde_3_phosphate_dehydrogenase denotes Gapdh
T8459 963-965 SO_EXT:0000028 denotes bp
T8460 985-994 GO:0010467 denotes expressed
T8461 1002-1007 UBERON:0000955 denotes brain
T8462 1054-1059 NCBITaxon:1910954 denotes Φ×174
T8463 1067-1070 CHEBI_SO_EXT:DNA denotes DNA
T8464 1076-1082 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T8465 1109-1111 SO_EXT:0000028 denotes bp
T8466 1120-1122 SO_EXT:0000028 denotes bp
T8467 1123-1129 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T2817 291-297 PR_EXT:000004453 denotes Atp5a1
T2818 299-304 GO_PR_EXT:glyceraldehyde_3_phosphate_dehydrogenase denotes Gapdh
T2819 309-315 PR_EXT:000004453 denotes Atp5a1
T2820 346-356 GO:0010467 denotes expression
T2821 373-380 UBERON:0000479 denotes tissues
T2822 395-400 UBERON:0000955 denotes brain
T2823 410-416 PR_EXT:000008680 denotes Homer3
T2824 418-423 PR_EXT:000002325 denotes Dncl1
T2825 425-431 PR_EXT:000016642 denotes Trim11
T2826 436-440 PR_EXT:000012318 denotes Pax6
T2827 568-573 GO_PR_EXT:glyceraldehyde_3_phosphate_dehydrogenase denotes Gapdh
T2828 615-621 PR_EXT:000004453 denotes Atp5a1
T2829 1169-1175 PR_EXT:000008680 denotes Homer3
T2830 1177-1182 PR_EXT:000002325 denotes Dncl1
T2831 1187-1193 PR_EXT:000016642 denotes Trim11
T2832 1194-1200 SO_EXT:sequence_cloned_entity denotes clones
T2833 1313-1320 SO_EXT:sequence_coding_function denotes encoded
T2834 1321-1329 CHEBI_PR_EXT:protein denotes proteins
T2835 1361-1371 CHEBI_SO_EXT:C_terminus_or_C_terminal_region denotes C-terminal
T2836 1372-1379 CHEBI_SO_EXT:peptide_or_peptide_region denotes peptide
T2837 1387-1393 SO_EXT:0000417 denotes domain
T2838 1397-1401 PR_EXT:000012318 denotes PAX6

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2786 40-46 PR:000008680 denotes Homer3
T2787 48-53 PR:000002325 denotes Dncl1
T2788 58-64 PR:000016642 denotes Trim11
T2789 245-251 PR:000008680 denotes Homer3
T2790 253-258 PR:000002325 denotes Dncl1
T2797 395-400 UBERON:0000955 denotes brain
T2798 410-416 PR:000008680 denotes Homer3
T2799 418-423 PR:000002325 denotes Dncl1
T2800 425-431 PR:000016642 denotes Trim11
T2801 436-440 PR:000012318 denotes Pax6
T2802 615-621 PR:000004453 denotes Atp5a1
T2803 1169-1175 PR:000008680 denotes Homer3
T2804 1177-1182 PR:000002325 denotes Dncl1
T2805 1187-1193 PR:000016642 denotes Trim11
T2806 1387-1393 SO:0000417 denotes domain
T2807 1397-1401 PR:000012318 denotes PAX6
T8416 714-720 PR:000008680 denotes Homer3
T8417 722-727 PR:000002325 denotes Dncl1
T8418 729-735 PR:000016642 denotes Trim11
T8419 740-744 PR:000012318 denotes Pax6
T8420 752-757 NCBITaxon:10088 denotes mouse
T8421 758-763 UBERON:0000955 denotes brain
T8422 810-817 SO:0000112 denotes primers
T8423 831-835 PR:000012318 denotes Pax6
T8424 841-843 SO:0000028 denotes bp
T8425 846-852 PR:000008680 denotes Homer3
T8426 858-860 SO:0000028 denotes bp
T8427 868-873 PR:000002325 denotes Dncl1
T8428 879-881 SO:0000028 denotes bp
T8429 887-893 PR:000016642 denotes Trim11
T8430 899-901 SO:0000028 denotes bp
T8431 932-938 PR:000004453 denotes Atp5a1
T8432 944-946 SO:0000028 denotes bp
T8433 963-965 SO:0000028 denotes bp
T8434 985-994 GO:0010467 denotes expressed
T8435 1002-1007 UBERON:0000955 denotes brain
T8436 1054-1059 NCBITaxon:1910954 denotes Φ×174
T8437 1109-1111 SO:0000028 denotes bp
T8438 1120-1122 SO:0000028 denotes bp
T2791 260-266 PR:000016642 denotes Trim11
T2792 271-275 PR:000012318 denotes Pax6
T2793 291-297 PR:000004453 denotes Atp5a1
T2794 309-315 PR:000004453 denotes Atp5a1
T2795 346-356 GO:0010467 denotes expression
T2796 373-380 UBERON:0000479 denotes tissues