PMC:1208879 / 8015-8670
Annnotations
craft-sa-dev
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2350 | 0-2 | PRP | denotes | We |
| T2351 | 3-15 | VBD | denotes | hypothesised |
| T2352 | 16-20 | IN | denotes | that |
| T2353 | 53-61 | VBN | denotes | involved |
| T2354 | 21-24 | DT | denotes | the |
| T2355 | 36-43 | NN | denotes | peptide |
| T2356 | 25-26 | NN | denotes | C |
| T2357 | 27-35 | JJ | denotes | terminal |
| T2358 | 26-27 | HYPH | denotes | - |
| T2359 | 44-49 | MD | denotes | might |
| T2360 | 50-52 | VB | denotes | be |
| T2361 | 62-64 | IN | denotes | in |
| T2362 | 65-72 | NN | denotes | protein |
| T2363 | 73-80 | NN | denotes | protein |
| T2364 | 72-73 | SYM | denotes | - |
| T2365 | 81-93 | NNS | denotes | interactions |
| T2366 | 93-95 | , | denotes | , |
| T2367 | 95-98 | CC | denotes | and |
| T2368 | 99-101 | PRP | denotes | we |
| T2369 | 102-108 | VBD | denotes | tested |
| T2370 | 109-113 | DT | denotes | this |
| T2371 | 114-116 | IN | denotes | by |
| T2372 | 117-126 | VBG | denotes | screening |
| T2373 | 127-128 | DT | denotes | a |
| T2374 | 134-141 | NN | denotes | library |
| T2375 | 129-133 | NN | denotes | cDNA |
| T2376 | 142-147 | VBG | denotes | using |
| T2377 | 148-151 | DT | denotes | the |
| T2378 | 169-175 | NN | denotes | system |
| T2379 | 152-157 | NN | denotes | yeast |
| T2380 | 158-161 | CD | denotes | two |
| T2381 | 162-168 | NN | denotes | hybrid |
| T2382 | 161-162 | HYPH | denotes | - |
| T2383 | 176-180 | IN | denotes | with |
| T2384 | 181-182 | DT | denotes | a |
| T2385 | 183-192 | NN | denotes | construct |
| T2386 | 193-194 | -LRB- | denotes | ( |
| T2387 | 194-201 | NN | denotes | PAX6CTP |
| T2388 | 201-202 | -RRB- | denotes | ) |
| T2389 | 203-205 | IN | denotes | in |
| T2390 | 253-258 | VBN | denotes | fused |
| T2391 | 206-211 | WDT | denotes | which |
| T2392 | 212-215 | DT | denotes | the |
| T2393 | 241-248 | NN | denotes | peptide |
| T2394 | 216-218 | CD | denotes | 32 |
| T2395 | 225-229 | NN | denotes | acid |
| T2396 | 219-224 | NN | denotes | amino |
| T2397 | 230-231 | NN | denotes | C |
| T2398 | 232-240 | JJ | denotes | terminal |
| T2399 | 231-232 | HYPH | denotes | - |
| T2400 | 249-252 | VBD | denotes | was |
| T2401 | 259-261 | IN | denotes | to |
| T2402 | 262-265 | DT | denotes | the |
| T2403 | 289-295 | NN | denotes | domain |
| T2404 | 266-271 | NN | denotes | yeast |
| T2405 | 272-276 | NN | denotes | GAL4 |
| T2406 | 277-280 | NN | denotes | DNA |
| T2407 | 281-288 | NN | denotes | binding |
| T2408 | 295-296 | . | denotes | . |
| T2409 | 296-380 | sentence | denotes | We chose to screen a mouse brain cDNA library as no human libraries were available. |
| T2410 | 297-299 | PRP | denotes | We |
| T2411 | 300-305 | VBD | denotes | chose |
| T2412 | 306-308 | TO | denotes | to |
| T2413 | 309-315 | VB | denotes | screen |
| T2414 | 316-317 | DT | denotes | a |
| T2415 | 335-342 | NN | denotes | library |
| T2416 | 318-323 | NN | denotes | mouse |
| T2417 | 324-329 | NN | denotes | brain |
| T2418 | 330-334 | NN | denotes | cDNA |
| T2419 | 343-345 | IN | denotes | as |
| T2420 | 365-369 | VBD | denotes | were |
| T2421 | 346-348 | DT | denotes | no |
| T2422 | 355-364 | NNS | denotes | libraries |
| T2423 | 349-354 | JJ | denotes | human |
| T2424 | 370-379 | JJ | denotes | available |
| T2425 | 379-380 | . | denotes | . |
| T2426 | 380-548 | sentence | denotes | Given the fact that the amino acid sequence of the PAX6 protein is identical in man and mouse, we reasoned that a mouse brain library would yield relevant interactors. |
| T2427 | 381-386 | VBN | denotes | Given |
| T2428 | 479-487 | VBD | denotes | reasoned |
| T2429 | 387-390 | DT | denotes | the |
| T2430 | 391-395 | NN | denotes | fact |
| T2431 | 396-400 | IN | denotes | that |
| T2432 | 445-447 | VBZ | denotes | is |
| T2433 | 401-404 | DT | denotes | the |
| T2434 | 416-424 | NN | denotes | sequence |
| T2435 | 405-410 | NN | denotes | amino |
| T2436 | 411-415 | NN | denotes | acid |
| T2437 | 425-427 | IN | denotes | of |
| T2438 | 428-431 | DT | denotes | the |
| T2439 | 437-444 | NN | denotes | protein |
| T2440 | 432-436 | NN | denotes | PAX6 |
| T2441 | 448-457 | JJ | denotes | identical |
| T2442 | 458-460 | IN | denotes | in |
| T2443 | 461-464 | NN | denotes | man |
| T2444 | 465-468 | CC | denotes | and |
| T2445 | 469-474 | NN | denotes | mouse |
| T2446 | 474-476 | , | denotes | , |
| T2447 | 476-478 | PRP | denotes | we |
| T2448 | 488-492 | IN | denotes | that |
| T2449 | 521-526 | VB | denotes | yield |
| T2450 | 493-494 | DT | denotes | a |
| T2451 | 507-514 | NN | denotes | library |
| T2452 | 495-500 | NN | denotes | mouse |
| T2453 | 501-506 | NN | denotes | brain |
| T2454 | 515-520 | MD | denotes | would |
| T2455 | 527-535 | JJ | denotes | relevant |
| T2456 | 536-547 | NNS | denotes | interactors |
| T2457 | 547-548 | . | denotes | . |
| T2458 | 548-655 | sentence | denotes | For comparison we also carried out the screen using a construct containing the whole PST domain (PAX6PST). |
| T2459 | 549-552 | IN | denotes | For |
| T2460 | 572-579 | VBD | denotes | carried |
| T2461 | 553-563 | NN | denotes | comparison |
| T2462 | 564-566 | PRP | denotes | we |
| T2463 | 567-571 | RB | denotes | also |
| T2464 | 580-583 | RP | denotes | out |
| T2465 | 584-587 | DT | denotes | the |
| T2466 | 588-594 | NN | denotes | screen |
| T2467 | 595-600 | VBG | denotes | using |
| T2468 | 601-602 | DT | denotes | a |
| T2469 | 603-612 | NN | denotes | construct |
| T2470 | 613-623 | VBG | denotes | containing |
| T2471 | 624-627 | DT | denotes | the |
| T2472 | 638-644 | NN | denotes | domain |
| T2473 | 628-633 | JJ | denotes | whole |
| T2474 | 634-637 | NN | denotes | PST |
| T2475 | 645-646 | -LRB- | denotes | ( |
| T2476 | 646-653 | NN | denotes | PAX6PST |
| T2477 | 653-654 | -RRB- | denotes | ) |
| T2478 | 654-655 | . | denotes | . |
| R1369 | T2350 | T2351 | nsubj | We,hypothesised |
| R1370 | T2352 | T2353 | mark | that,involved |
| R1371 | T2353 | T2351 | ccomp | involved,hypothesised |
| R1372 | T2354 | T2355 | det | the,peptide |
| R1373 | T2355 | T2353 | nsubjpass | peptide,involved |
| R1374 | T2356 | T2357 | npadvmod | C,terminal |
| R1375 | T2357 | T2355 | amod | terminal,peptide |
| R1376 | T2358 | T2357 | punct | -,terminal |
| R1377 | T2359 | T2353 | aux | might,involved |
| R1378 | T2360 | T2353 | auxpass | be,involved |
| R1379 | T2361 | T2353 | prep | in,involved |
| R1380 | T2362 | T2363 | nmod | protein,protein |
| R1381 | T2363 | T2365 | compound | protein,interactions |
| R1382 | T2364 | T2363 | punct | -,protein |
| R1383 | T2365 | T2361 | pobj | interactions,in |
| R1384 | T2366 | T2351 | punct | ", ",hypothesised |
| R1385 | T2367 | T2351 | cc | and,hypothesised |
| R1386 | T2368 | T2369 | nsubj | we,tested |
| R1387 | T2369 | T2351 | conj | tested,hypothesised |
| R1388 | T2370 | T2369 | dobj | this,tested |
| R1389 | T2371 | T2369 | prep | by,tested |
| R1390 | T2372 | T2371 | pcomp | screening,by |
| R1391 | T2373 | T2374 | det | a,library |
| R1392 | T2374 | T2372 | dobj | library,screening |
| R1393 | T2375 | T2374 | compound | cDNA,library |
| R1394 | T2376 | T2372 | advcl | using,screening |
| R1395 | T2377 | T2378 | det | the,system |
| R1396 | T2378 | T2376 | dobj | system,using |
| R1397 | T2379 | T2378 | nmod | yeast,system |
| R1398 | T2380 | T2381 | nummod | two,hybrid |
| R1399 | T2381 | T2378 | compound | hybrid,system |
| R1400 | T2382 | T2381 | punct | -,hybrid |
| R1401 | T2383 | T2378 | prep | with,system |
| R1402 | T2384 | T2385 | det | a,construct |
| R1403 | T2385 | T2383 | pobj | construct,with |
| R1404 | T2386 | T2387 | punct | (,PAX6CTP |
| R1405 | T2387 | T2385 | parataxis | PAX6CTP,construct |
| R1406 | T2388 | T2387 | punct | ),PAX6CTP |
| R1407 | T2389 | T2390 | prep | in,fused |
| R1408 | T2390 | T2385 | relcl | fused,construct |
| R1409 | T2391 | T2389 | pobj | which,in |
| R1410 | T2392 | T2393 | det | the,peptide |
| R1411 | T2393 | T2390 | nsubjpass | peptide,fused |
| R1412 | T2394 | T2395 | nummod | 32,acid |
| R1413 | T2395 | T2393 | nmod | acid,peptide |
| R1414 | T2396 | T2395 | nmod | amino,acid |
| R1415 | T2397 | T2398 | npadvmod | C,terminal |
| R1416 | T2398 | T2393 | amod | terminal,peptide |
| R1417 | T2399 | T2398 | punct | -,terminal |
| R1418 | T2400 | T2390 | auxpass | was,fused |
| R1419 | T2401 | T2390 | prep | to,fused |
| R1420 | T2402 | T2403 | det | the,domain |
| R1421 | T2403 | T2401 | pobj | domain,to |
| R1422 | T2404 | T2403 | compound | yeast,domain |
| R1423 | T2405 | T2403 | compound | GAL4,domain |
| R1424 | T2406 | T2407 | compound | DNA,binding |
| R1425 | T2407 | T2403 | compound | binding,domain |
| R1426 | T2408 | T2369 | punct | .,tested |
| R1427 | T2410 | T2411 | nsubj | We,chose |
| R1428 | T2412 | T2413 | aux | to,screen |
| R1429 | T2413 | T2411 | xcomp | screen,chose |
| R1430 | T2414 | T2415 | det | a,library |
| R1431 | T2415 | T2413 | dobj | library,screen |
| R1432 | T2416 | T2417 | compound | mouse,brain |
| R1433 | T2417 | T2415 | compound | brain,library |
| R1434 | T2418 | T2415 | compound | cDNA,library |
| R1435 | T2419 | T2420 | mark | as,were |
| R1436 | T2420 | T2411 | advcl | were,chose |
| R1437 | T2421 | T2422 | det | no,libraries |
| R1438 | T2422 | T2420 | nsubj | libraries,were |
| R1439 | T2423 | T2422 | amod | human,libraries |
| R1440 | T2424 | T2420 | acomp | available,were |
| R1441 | T2425 | T2411 | punct | .,chose |
| R1442 | T2427 | T2428 | prep | Given,reasoned |
| R1443 | T2429 | T2430 | det | the,fact |
| R1444 | T2430 | T2427 | pobj | fact,Given |
| R1445 | T2431 | T2432 | mark | that,is |
| R1446 | T2432 | T2430 | acl | is,fact |
| R1447 | T2433 | T2434 | det | the,sequence |
| R1448 | T2434 | T2432 | nsubj | sequence,is |
| R1449 | T2435 | T2436 | compound | amino,acid |
| R1450 | T2436 | T2434 | compound | acid,sequence |
| R1451 | T2437 | T2434 | prep | of,sequence |
| R1452 | T2438 | T2439 | det | the,protein |
| R1453 | T2439 | T2437 | pobj | protein,of |
| R1454 | T2440 | T2439 | compound | PAX6,protein |
| R1455 | T2441 | T2432 | acomp | identical,is |
| R1456 | T2442 | T2432 | prep | in,is |
| R1457 | T2443 | T2442 | pobj | man,in |
| R1458 | T2444 | T2443 | cc | and,man |
| R1459 | T2445 | T2443 | conj | mouse,man |
| R1460 | T2446 | T2428 | punct | ", ",reasoned |
| R1461 | T2447 | T2428 | nsubj | we,reasoned |
| R1462 | T2448 | T2449 | mark | that,yield |
| R1463 | T2449 | T2428 | ccomp | yield,reasoned |
| R1464 | T2450 | T2451 | det | a,library |
| R1465 | T2451 | T2449 | nsubj | library,yield |
| R1466 | T2452 | T2453 | compound | mouse,brain |
| R1467 | T2453 | T2451 | compound | brain,library |
| R1468 | T2454 | T2449 | aux | would,yield |
| R1469 | T2455 | T2456 | amod | relevant,interactors |
| R1470 | T2456 | T2449 | dobj | interactors,yield |
| R1471 | T2457 | T2428 | punct | .,reasoned |
| R1472 | T2459 | T2460 | prep | For,carried |
| R1473 | T2461 | T2459 | pobj | comparison,For |
| R1474 | T2462 | T2460 | nsubj | we,carried |
| R1475 | T2463 | T2460 | advmod | also,carried |
| R1476 | T2464 | T2460 | prt | out,carried |
| R1477 | T2465 | T2466 | det | the,screen |
| R1478 | T2466 | T2460 | dobj | screen,carried |
| R1479 | T2467 | T2460 | advcl | using,carried |
| R1480 | T2468 | T2469 | det | a,construct |
| R1481 | T2469 | T2467 | dobj | construct,using |
| R1482 | T2470 | T2469 | acl | containing,construct |
| R1483 | T2471 | T2472 | det | the,domain |
| R1484 | T2472 | T2470 | dobj | domain,containing |
| R1485 | T2473 | T2472 | amod | whole,domain |
| R1486 | T2474 | T2472 | compound | PST,domain |
| R1487 | T2475 | T2469 | punct | (,construct |
| R1488 | T2476 | T2469 | appos | PAX6PST,construct |
| R1489 | T2477 | T2469 | punct | ),construct |
| R1490 | T2478 | T2460 | punct | .,carried |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2247 | 25-35 | CHEBI_SO_EXT:C_terminus_or_C_terminal_region | denotes | C-terminal |
| T2248 | 36-43 | CHEBI_SO_EXT:peptide_or_peptide_region | denotes | peptide |
| T2249 | 65-72 | CHEBI_PR_EXT:protein | denotes | protein |
| T2250 | 73-80 | CHEBI_PR_EXT:protein | denotes | protein |
| T2251 | 129-133 | SO_EXT:cDNA | denotes | cDNA |
| T2252 | 152-157 | NCBITaxon_EXT:yeast | denotes | yeast |
| T2253 | 183-192 | SO_EXT:engineered_biological_sequence | denotes | construct |
| T2254 | 219-229 | CHEBI_SO_EXT:amino_acid | denotes | amino acid |
| T2255 | 230-240 | CHEBI_SO_EXT:C_terminus_or_C_terminal_region | denotes | C-terminal |
| T2256 | 241-248 | CHEBI_SO_EXT:peptide_or_peptide_region | denotes | peptide |
| T2257 | 253-258 | SO_EXT:sequence_fusion_process | denotes | fused |
| T2258 | 266-271 | NCBITaxon_EXT:yeast | denotes | yeast |
| T2259 | 272-276 | PR_EXT:P04386 | denotes | GAL4 |
| T2260 | 277-280 | CHEBI_SO_EXT:DNA | denotes | DNA |
| T2261 | 281-288 | CHEMINF_GO_EXT:chemical_binding_or_bond_formation | denotes | binding |
| T2262 | 289-295 | SO_EXT:0000417 | denotes | domain |
| T2263 | 318-323 | NCBITaxon:10088 | denotes | mouse |
| T2264 | 324-329 | UBERON:0000955 | denotes | brain |
| T2265 | 330-334 | SO_EXT:cDNA | denotes | cDNA |
| T2266 | 349-354 | NCBITaxon:9606 | denotes | human |
| T2267 | 405-415 | CHEBI_SO_EXT:amino_acid | denotes | amino acid |
| T2268 | 416-424 | SO_EXT:biological_sequence | denotes | sequence |
| T2269 | 432-436 | PR_EXT:000012318 | denotes | PAX6 |
| T2270 | 437-444 | CHEBI_PR_EXT:protein | denotes | protein |
| T2271 | 461-464 | NCBITaxon:9606 | denotes | man |
| T2272 | 469-474 | NCBITaxon:10088 | denotes | mouse |
| T2273 | 495-500 | NCBITaxon:10088 | denotes | mouse |
| T2274 | 501-506 | UBERON:0000955 | denotes | brain |
| T2275 | 603-612 | SO_EXT:engineered_biological_sequence | denotes | construct |
| T2276 | 638-644 | SO_EXT:0000417 | denotes | domain |
craft-ca-core-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2194 | 272-276 | PR:P04386 | denotes | GAL4 |
| T2195 | 289-295 | SO:0000417 | denotes | domain |
| T2196 | 318-323 | NCBITaxon:10088 | denotes | mouse |
| T2197 | 324-329 | UBERON:0000955 | denotes | brain |
| T2198 | 349-354 | NCBITaxon:9606 | denotes | human |
| T2199 | 432-436 | PR:000012318 | denotes | PAX6 |
| T2200 | 461-464 | NCBITaxon:9606 | denotes | man |
| T2201 | 469-474 | NCBITaxon:10088 | denotes | mouse |
| T2202 | 495-500 | NCBITaxon:10088 | denotes | mouse |
| T2203 | 501-506 | UBERON:0000955 | denotes | brain |
| T2204 | 638-644 | SO:0000417 | denotes | domain |