PMC:1208879 / 511-1127
Annnotations
craft-ca-core-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T82 | 270-274 | PR:000012318 | denotes | PAX6 |
| T83 | 305-311 | SO:0000417 | denotes | domain |
| T84 | 325-329 | PR:000012318 | denotes | PAX6 |
| T85 | 372-393 | GO:0014069 | denotes | post-synaptic density |
| T86 | 395-398 | GO:0014069 | denotes | PSD |
| T87 | 408-414 | PR:000008680 | denotes | HOMER3 |
| T88 | 420-426 | GO:0030286 | denotes | dynein |
| T89 | 435-440 | PR:000002325 | denotes | DNCL1 |
| T90 | 475-481 | PR:000016642 | denotes | TRIM11 |
| T91 | 500-504 | PR:000012318 | denotes | PAX6 |
| T92 | 555-558 | UBERON:0000970 | denotes | eye |
| T79 | 102-106 | PR:000012318 | denotes | PAX6 |
| T80 | 183-188 | UBERON:0000955 | denotes | brain |
| T81 | 189-198 | GO:0010467 | denotes | expressed |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T130 | 59-68 | SO_EXT:biological_conservation_process_or_quality | denotes | conserved |
| T131 | 69-76 | CHEBI_SO_EXT:peptide_or_peptide_region | denotes | peptide |
| T132 | 84-94 | CHEBI_SO_EXT:C_terminus_or_C_terminal_region | denotes | C-terminus |
| T133 | 102-106 | PR_EXT:000012318 | denotes | PAX6 |
| T134 | 107-114 | CHEBI_PR_EXT:protein | denotes | protein |
| T135 | 116-121 | NCBITaxon_EXT:yeast | denotes | Yeast |
| T136 | 183-188 | UBERON:0000955 | denotes | brain |
| T137 | 189-198 | GO:0010467 | denotes | expressed |
| T138 | 199-207 | CHEBI_PR_EXT:protein | denotes | proteins |
| T139 | 231-241 | CHEBI_SO_EXT:C_terminus_or_C_terminal_region | denotes | C-terminal |
| T140 | 242-249 | CHEBI_SO_EXT:peptide_or_peptide_region | denotes | peptide |
| T141 | 270-274 | PR_EXT:000012318 | denotes | PAX6 |
| T142 | 275-282 | CHEBI_SO_EXT:proline | denotes | proline |
| T143 | 283-289 | CHEBI_SO_EXT:serine | denotes | serine |
| T144 | 290-299 | CHEBI_SO_EXT:threonine | denotes | threonine |
| T145 | 305-311 | SO_EXT:0000417 | denotes | domain |
| T146 | 325-329 | PR_EXT:000012318 | denotes | PAX6 |
| T147 | 342-350 | CHEBI_PR_EXT:protein | denotes | proteins |
| T148 | 372-393 | GO:0014069 | denotes | post-synaptic density |
| T149 | 395-398 | GO:0014069 | denotes | PSD |
| T150 | 400-407 | CHEBI_PR_EXT:protein | denotes | protein |
| T151 | 408-414 | PR_EXT:000008680 | denotes | HOMER3 |
| T152 | 420-426 | GO:0030286 | denotes | dynein |
| T153 | 435-440 | PR_EXT:000002325 | denotes | DNCL1 |
| T154 | 461-466 | SO_EXT:sequence_or_structure_motif | denotes | motif |
| T155 | 467-474 | CHEBI_PR_EXT:protein | denotes | protein |
| T156 | 475-481 | PR_EXT:000016642 | denotes | TRIM11 |
| T157 | 489-499 | CHEBI_SO_EXT:C_terminus_or_C_terminal_region | denotes | C-terminal |
| T158 | 500-504 | PR_EXT:000012318 | denotes | PAX6 |
| T159 | 505-514 | SO_EXT:sequence_alteration_entity_or_process | denotes | mutations |
| T160 | 555-558 | UBERON:0000970 | denotes | eye |
craft-sa-dev
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T270 | 0-2 | PRP | denotes | We |
| T271 | 3-7 | VBD | denotes | used |
| T272 | 8-22 | NN | denotes | bioinformatics |
| T273 | 23-33 | NNS | denotes | techniques |
| T274 | 34-36 | TO | denotes | to |
| T275 | 37-49 | VB | denotes | characterise |
| T276 | 50-51 | DT | denotes | a |
| T277 | 69-76 | NN | denotes | peptide |
| T278 | 52-58 | RB | denotes | highly |
| T279 | 59-68 | VBN | denotes | conserved |
| T280 | 77-79 | IN | denotes | at |
| T281 | 80-83 | DT | denotes | the |
| T282 | 86-94 | NN | denotes | terminus |
| T283 | 84-85 | NN | denotes | C |
| T284 | 85-86 | HYPH | denotes | - |
| T285 | 95-97 | IN | denotes | of |
| T286 | 98-101 | DT | denotes | the |
| T287 | 107-114 | NN | denotes | protein |
| T288 | 102-106 | NN | denotes | PAX6 |
| T289 | 114-115 | . | denotes | . |
| T290 | 115-312 | sentence | denotes | Yeast two-hybrid library screens were then carried out to identify brain-expressed proteins that interact with the C-terminal peptide and with the entire PAX6 proline-serine-threonine-rich domain. |
| T291 | 116-121 | NN | denotes | Yeast |
| T292 | 141-148 | NNS | denotes | screens |
| T293 | 122-125 | CD | denotes | two |
| T294 | 126-132 | NN | denotes | hybrid |
| T295 | 125-126 | HYPH | denotes | - |
| T296 | 133-140 | NN | denotes | library |
| T297 | 159-166 | VBN | denotes | carried |
| T298 | 149-153 | VBD | denotes | were |
| T299 | 154-158 | RB | denotes | then |
| T300 | 167-170 | RP | denotes | out |
| T301 | 171-173 | TO | denotes | to |
| T302 | 174-182 | VB | denotes | identify |
| T303 | 183-188 | NN | denotes | brain |
| T304 | 189-198 | VBN | denotes | expressed |
| T305 | 188-189 | HYPH | denotes | - |
| T306 | 199-207 | NN | denotes | proteins |
| T307 | 208-212 | WDT | denotes | that |
| T308 | 213-221 | VBP | denotes | interact |
| T309 | 222-226 | IN | denotes | with |
| T310 | 227-230 | DT | denotes | the |
| T311 | 242-249 | NN | denotes | peptide |
| T312 | 231-232 | NN | denotes | C |
| T313 | 233-241 | JJ | denotes | terminal |
| T314 | 232-233 | HYPH | denotes | - |
| T315 | 250-253 | CC | denotes | and |
| T316 | 254-258 | IN | denotes | with |
| T317 | 259-262 | DT | denotes | the |
| T318 | 305-311 | NN | denotes | domain |
| T319 | 263-269 | JJ | denotes | entire |
| T320 | 270-274 | NN | denotes | PAX6 |
| T321 | 275-282 | NN | denotes | proline |
| T322 | 290-299 | NN | denotes | threonine |
| T323 | 282-283 | HYPH | denotes | - |
| T324 | 283-289 | NN | denotes | serine |
| T325 | 289-290 | HYPH | denotes | - |
| T326 | 300-304 | JJ | denotes | rich |
| T327 | 299-300 | HYPH | denotes | - |
| T328 | 311-312 | . | denotes | . |
| T329 | 312-482 | sentence | denotes | Three novel PAX6-interacting proteins were identified: the post-synaptic density (PSD) protein HOMER3, the dynein subunit DNCL1, and the tripartite motif protein TRIM11. |
| T330 | 313-318 | CD | denotes | Three |
| T331 | 342-350 | NN | denotes | proteins |
| T332 | 319-324 | JJ | denotes | novel |
| T333 | 325-329 | NN | denotes | PAX6 |
| T334 | 330-341 | VBG | denotes | interacting |
| T335 | 329-330 | HYPH | denotes | - |
| T336 | 356-366 | VBN | denotes | identified |
| T337 | 351-355 | VBD | denotes | were |
| T338 | 366-368 | : | denotes | : |
| T339 | 368-371 | DT | denotes | the |
| T340 | 400-407 | NN | denotes | protein |
| T341 | 372-385 | JJ | denotes | post-synaptic |
| T342 | 386-393 | NN | denotes | density |
| T343 | 394-395 | -LRB- | denotes | ( |
| T344 | 395-398 | NN | denotes | PSD |
| T345 | 398-399 | -RRB- | denotes | ) |
| T346 | 408-414 | NN | denotes | HOMER3 |
| T347 | 414-416 | , | denotes | , |
| T348 | 416-419 | DT | denotes | the |
| T349 | 427-434 | NN | denotes | subunit |
| T350 | 420-426 | NN | denotes | dynein |
| T351 | 435-440 | NN | denotes | DNCL1 |
| T352 | 440-442 | , | denotes | , |
| T353 | 442-445 | CC | denotes | and |
| T354 | 446-449 | DT | denotes | the |
| T355 | 467-474 | NN | denotes | protein |
| T356 | 450-460 | JJ | denotes | tripartite |
| T357 | 461-466 | NN | denotes | motif |
| T358 | 475-481 | NN | denotes | TRIM11 |
| T359 | 481-482 | . | denotes | . |
| T360 | 482-616 | sentence | denotes | Three C-terminal PAX6 mutations, previously identified in patients with eye malformations, all reduced or abolished the interactions. |
| T361 | 483-488 | CD | denotes | Three |
| T362 | 505-514 | NNS | denotes | mutations |
| T363 | 489-490 | NN | denotes | C |
| T364 | 491-499 | JJ | denotes | terminal |
| T365 | 490-491 | HYPH | denotes | - |
| T366 | 500-504 | NN | denotes | PAX6 |
| T367 | 578-585 | VBD | denotes | reduced |
| T368 | 514-516 | , | denotes | , |
| T369 | 516-526 | RB | denotes | previously |
| T370 | 527-537 | VBN | denotes | identified |
| T371 | 538-540 | IN | denotes | in |
| T372 | 541-549 | NNS | denotes | patients |
| T373 | 550-554 | IN | denotes | with |
| T374 | 555-558 | NN | denotes | eye |
| T375 | 559-572 | NNS | denotes | malformations |
| T376 | 572-574 | , | denotes | , |
| T377 | 574-577 | DT | denotes | all |
| T378 | 586-588 | CC | denotes | or |
| T379 | 589-598 | VBD | denotes | abolished |
| T380 | 599-602 | DT | denotes | the |
| T381 | 603-615 | NNS | denotes | interactions |
| T382 | 615-616 | . | denotes | . |
| R88 | T277 | T275 | dobj | peptide,characterise |
| R89 | T278 | T279 | advmod | highly,conserved |
| R90 | T279 | T277 | amod | conserved,peptide |
| R93 | T282 | T280 | pobj | terminus,at |
| R94 | T283 | T282 | compound | C,terminus |
| R95 | T284 | T282 | punct | -,terminus |
| R98 | T287 | T285 | pobj | protein,of |
| R99 | T288 | T287 | compound | PAX6,protein |
| R102 | T292 | T297 | nsubjpass | screens,carried |
| R103 | T293 | T294 | nummod | two,hybrid |
| R105 | T295 | T294 | punct | -,hybrid |
| R106 | T296 | T292 | compound | library,screens |
| R113 | T304 | T306 | amod | expressed,proteins |
| R114 | T305 | T304 | punct | -,expressed |
| R120 | T311 | T309 | pobj | peptide,with |
| R121 | T312 | T313 | npadvmod | C,terminal |
| R123 | T314 | T313 | punct | -,terminal |
| R127 | T318 | T316 | pobj | domain,with |
| R128 | T319 | T318 | amod | entire,domain |
| R129 | T320 | T318 | nmod | PAX6,domain |
| R130 | T321 | T322 | compound | proline,threonine |
| R131 | T322 | T326 | npadvmod | threonine,rich |
| R132 | T323 | T322 | punct | -,threonine |
| R133 | T324 | T322 | compound | serine,threonine |
| R134 | T325 | T322 | punct | -,threonine |
| R136 | T327 | T326 | punct | -,rich |
| R139 | T331 | T336 | nsubjpass | proteins,identified |
| R140 | T332 | T331 | amod | novel,proteins |
| R141 | T333 | T334 | npadvmod | PAX6,interacting |
| R143 | T335 | T334 | punct | -,interacting |
| R147 | T340 | T336 | dep | protein,identified |
| R148 | T341 | T342 | amod | post-synaptic,density |
| R149 | T342 | T340 | nmod | density,protein |
| R150 | T343 | T342 | punct | (,density |
| R151 | T344 | T342 | appos | PSD,density |
| R152 | T345 | T340 | punct | ),protein |
| R156 | T349 | T340 | conj | subunit,protein |
| R157 | T350 | T349 | compound | dynein,subunit |
| R162 | T355 | T349 | conj | protein,subunit |
| R163 | T356 | T355 | amod | tripartite,protein |
| R164 | T357 | T355 | compound | motif,protein |
| R168 | T362 | T367 | nsubj | mutations,reduced |
| R169 | T363 | T364 | npadvmod | C,terminal |
| R171 | T365 | T364 | punct | -,terminal |
| R172 | T366 | T362 | compound | PAX6,mutations |
| R82 | T270 | T271 | nsubj | We,used |
| R83 | T272 | T273 | compound | bioinformatics,techniques |
| R84 | T273 | T271 | dobj | techniques,used |
| R85 | T274 | T275 | aux | to,characterise |
| R86 | T275 | T271 | advcl | characterise,used |
| R87 | T276 | T277 | det | a,peptide |
| R91 | T280 | T275 | prep | at,characterise |
| R92 | T281 | T282 | det | the,terminus |
| R96 | T285 | T282 | prep | of,terminus |
| R97 | T286 | T287 | det | the,protein |
| R100 | T289 | T271 | punct | .,used |
| R101 | T291 | T292 | nmod | Yeast,screens |
| R104 | T294 | T292 | compound | hybrid,screens |
| R107 | T298 | T297 | auxpass | were,carried |
| R108 | T299 | T297 | advmod | then,carried |
| R109 | T300 | T297 | prt | out,carried |
| R110 | T301 | T302 | aux | to,identify |
| R111 | T302 | T297 | advcl | identify,carried |
| R112 | T303 | T304 | npadvmod | brain,expressed |
| R115 | T306 | T302 | dobj | proteins,identify |
| R116 | T307 | T308 | dep | that,interact |
| R117 | T308 | T306 | relcl | interact,proteins |
| R118 | T309 | T308 | prep | with,interact |
| R119 | T310 | T311 | det | the,peptide |
| R122 | T313 | T311 | amod | terminal,peptide |
| R124 | T315 | T309 | cc | and,with |
| R125 | T316 | T309 | conj | with,with |
| R126 | T317 | T318 | det | the,domain |
| R135 | T326 | T318 | amod | rich,domain |
| R137 | T328 | T297 | punct | .,carried |
| R138 | T330 | T331 | nummod | Three,proteins |
| R142 | T334 | T331 | amod | interacting,proteins |
| R144 | T337 | T336 | auxpass | were,identified |
| R145 | T338 | T336 | punct | : ,identified |
| R146 | T339 | T340 | det | the,protein |
| R153 | T346 | T340 | appos | HOMER3,protein |
| R154 | T347 | T340 | punct | ", ",protein |
| R155 | T348 | T349 | det | the,subunit |
| R158 | T351 | T349 | appos | DNCL1,subunit |
| R159 | T352 | T349 | punct | ", ",subunit |
| R160 | T353 | T349 | cc | and,subunit |
| R161 | T354 | T355 | det | the,protein |
| R165 | T358 | T355 | appos | TRIM11,protein |
| R166 | T359 | T336 | punct | .,identified |
| R167 | T361 | T362 | nummod | Three,mutations |
| R170 | T364 | T362 | amod | terminal,mutations |
| R173 | T368 | T362 | punct | ", ",mutations |
| R174 | T369 | T370 | advmod | previously,identified |
| R175 | T370 | T362 | acl | identified,mutations |
| R176 | T371 | T370 | prep | in,identified |
| R177 | T372 | T371 | pobj | patients,in |
| R178 | T373 | T372 | prep | with,patients |
| R179 | T374 | T375 | compound | eye,malformations |
| R180 | T375 | T373 | pobj | malformations,with |
| R181 | T376 | T362 | punct | ", ",mutations |
| R182 | T377 | T362 | appos | all,mutations |
| R183 | T378 | T367 | cc | or,reduced |
| R184 | T379 | T367 | conj | abolished,reduced |
| R185 | T380 | T381 | det | the,interactions |
| R186 | T381 | T379 | dobj | interactions,abolished |
| R187 | T382 | T367 | punct | .,reduced |