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PMC:1208879 / 4945-5517 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1514 2-4 , denotes ,
T1515 4-9 WDT denotes which
T1516 10-19 VBZ denotes modulates
T1517 20-24 NN denotes PAX6
T1518 25-33 NN denotes activity
T1519 34-36 IN denotes in
T1520 37-42 JJ denotes early
T1521 52-63 NN denotes development
T1522 43-51 JJ denotes neuronal
T1523 64-65 -LRB- denotes [
T1524 65-67 CD denotes 23
T1525 67-68 -RRB- denotes ]
T1526 68-70 , denotes ,
T1527 70-73 CC denotes and
T1528 74-78 IN denotes with
T1529 79-82 NN denotes MAF
T1530 83-91 NN denotes proteins
T1531 92-94 IN denotes on
T1532 95-98 DT denotes the
T1533 108-116 NN denotes promoter
T1534 99-107 NN denotes glucagon
T1535 116-118 , denotes ,
T1536 118-123 WDT denotes which
T1537 124-130 VBZ denotes causes
T1538 131-140 VBN denotes increased
T1539 141-151 NN denotes expression
T1540 152-154 IN denotes of
T1541 155-159 DT denotes this
T1542 179-183 NN denotes gene
T1543 160-170 JJ denotes pancreatic
T1544 171-178 NN denotes hormone
T1545 184-185 -LRB- denotes [
T1546 185-187 CD denotes 17
T1547 187-188 -RRB- denotes ]
T1548 188-189 . denotes .
T1549 189-297 sentence denotes Here we report the preliminary results of the first systematic screen for proteins that interact with PAX6.
T1550 190-194 RB denotes Here
T1551 198-204 VBP denotes report
T1552 195-197 PRP denotes we
T1553 205-208 DT denotes the
T1554 221-228 NNS denotes results
T1555 209-220 JJ denotes preliminary
T1556 229-231 IN denotes of
T1557 232-235 DT denotes the
T1558 253-259 NN denotes screen
T1559 236-241 JJ denotes first
T1560 242-252 JJ denotes systematic
T1561 260-263 IN denotes for
T1562 264-272 NN denotes proteins
T1563 273-277 WDT denotes that
T1564 278-286 VBP denotes interact
T1565 287-291 IN denotes with
T1566 292-296 NN denotes PAX6
T1567 296-297 . denotes .
T1568 297-463 sentence denotes We used sequence alignment algorithms and secondary structure prediction programs to define a new domain of 32 amino acids at the C-terminal end of the PAX6 protein.
T1569 298-300 PRP denotes We
T1570 301-305 VBD denotes used
T1571 306-314 NN denotes sequence
T1572 315-324 NN denotes alignment
T1573 325-335 NNS denotes algorithms
T1574 336-339 CC denotes and
T1575 340-349 JJ denotes secondary
T1576 350-359 NN denotes structure
T1577 360-370 NN denotes prediction
T1578 371-379 NNS denotes programs
T1579 380-382 TO denotes to
T1580 383-389 VB denotes define
T1581 390-391 DT denotes a
T1582 396-402 NN denotes domain
T1583 392-395 JJ denotes new
T1584 403-405 IN denotes of
T1585 406-408 CD denotes 32
T1586 415-420 NNS denotes acids
T1587 409-414 NN denotes amino
T1588 421-423 IN denotes at
T1589 424-427 DT denotes the
T1590 439-442 NN denotes end
T1591 428-429 NN denotes C
T1592 430-438 JJ denotes terminal
T1593 429-430 HYPH denotes -
T1594 443-445 IN denotes of
T1595 446-449 DT denotes the
T1596 455-462 NN denotes protein
T1597 450-454 NN denotes PAX6
T1598 462-463 . denotes .
T1600 464-466 PRP denotes We
T1601 472-480 VBD denotes screened
T1602 467-471 RB denotes then
T1603 481-482 DT denotes a
T1604 489-496 NN denotes library
T1605 483-488 NN denotes brain
T1606 497-501 IN denotes with
T1607 502-506 DT denotes this
T1608 507-514 NN denotes peptide
T1609 515-520 VBG denotes using
T1610 521-524 DT denotes the
T1611 542-551 NN denotes technique
T1612 525-530 NN denotes yeast
T1613 531-534 CD denotes two
T1614 535-541 NN denotes hybrid
T1615 534-535 HYPH denotes -
T1616 552-555 CC denotes and
T1617 556-566 VBD denotes identified
T1618 567-572 CD denotes three
R895 T1515 T1516 dep which,modulates
R897 T1517 T1518 compound PAX6,activity
R898 T1518 T1516 dobj activity,modulates
R899 T1519 T1516 prep in,modulates
R900 T1520 T1521 amod early,development
R901 T1521 T1519 pobj development,in
R902 T1522 T1521 amod neuronal,development
R903 T1523 T1524 punct [,23
R905 T1525 T1524 punct ],23
R909 T1529 T1530 compound MAF,proteins
R910 T1530 T1528 pobj proteins,with
R911 T1531 T1530 prep on,proteins
R912 T1532 T1533 det the,promoter
R913 T1613 T1614 nummod two,hybrid
R914 T1533 T1531 pobj promoter,on
R915 T1534 T1533 compound glucagon,promoter
R916 T1614 T1611 compound hybrid,technique
R917 T1615 T1614 punct -,hybrid
R918 T1535 T1533 punct ", ",promoter
R919 T1616 T1601 cc and,screened
R920 T1617 T1601 conj identified,screened
R922 T1536 T1537 dep which,causes
R925 T1537 T1533 relcl causes,promoter
R932 T1538 T1539 amod increased,expression
R935 T1539 T1537 dobj expression,causes
R938 T1540 T1539 prep of,expression
R941 T1541 T1542 det this,gene
R944 T1542 T1540 pobj gene,of
R948 T1543 T1542 amod pancreatic,gene
R951 T1544 T1542 compound hormone,gene
R952 T1545 T1546 punct [,17
R955 T1546 T1528 parataxis 17,with
R957 T1547 T1546 punct ],17
R962 T1550 T1551 advmod Here,report
R963 T1552 T1551 nsubj we,report
R964 T1553 T1554 det the,results
R965 T1554 T1551 dobj results,report
R966 T1555 T1554 amod preliminary,results
R967 T1556 T1554 prep of,results
R968 T1557 T1558 det the,screen
R969 T1558 T1556 pobj screen,of
R970 T1559 T1558 amod first,screen
R971 T1560 T1558 amod systematic,screen
R972 T1561 T1558 prep for,screen
R973 T1562 T1561 pobj proteins,for
R974 T1563 T1564 dep that,interact
R975 T1564 T1562 relcl interact,proteins
R976 T1565 T1564 prep with,interact
R977 T1566 T1565 pobj PAX6,with
R978 T1567 T1551 punct .,report
R979 T1569 T1570 nsubj We,used
R980 T1571 T1572 compound sequence,alignment
R981 T1572 T1573 compound alignment,algorithms
R982 T1573 T1570 dobj algorithms,used
R983 T1574 T1573 cc and,algorithms
R984 T1575 T1576 amod secondary,structure
R985 T1576 T1577 compound structure,prediction
R986 T1577 T1578 compound prediction,programs
R987 T1578 T1573 conj programs,algorithms
R988 T1579 T1580 aux to,define
R989 T1580 T1570 advcl define,used
R990 T1581 T1582 det a,domain
R991 T1582 T1580 dobj domain,define
R992 T1583 T1582 amod new,domain
R993 T1584 T1582 prep of,domain
R994 T1585 T1586 nummod 32,acids
R995 T1586 T1584 pobj acids,of
R996 T1587 T1586 compound amino,acids
R997 T1588 T1580 prep at,define
R998 T1589 T1590 det the,end
R999 T1590 T1588 pobj end,at
R1000 T1591 T1592 npadvmod C,terminal
R1001 T1592 T1590 amod terminal,end
R1002 T1593 T1592 punct -,terminal
R1003 T1594 T1590 prep of,end
R1004 T1595 T1596 det the,protein
R1005 T1596 T1594 pobj protein,of
R1006 T1597 T1596 compound PAX6,protein
R1007 T1598 T1570 punct .,used
R1008 T1600 T1601 nsubj We,screened
R1009 T1602 T1601 advmod then,screened
R1010 T1603 T1604 det a,library
R1011 T1604 T1601 dobj library,screened
R1012 T1605 T1604 compound brain,library
R1013 T1606 T1601 prep with,screened
R1014 T1607 T1608 det this,peptide
R1015 T1608 T1606 pobj peptide,with
R1016 T1609 T1601 advcl using,screened
R1017 T1610 T1611 det the,technique
R1018 T1611 T1609 dobj technique,using
R1019 T1612 T1611 nmod yeast,technique

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T802 10-19 GO:0065007 denotes modulates
T803 20-24 PR_EXT:000012318 denotes PAX6
T804 43-51 CL:0000540 denotes neuronal
T805 43-63 GO_EXT:neuron_development_or_generation denotes neuronal development
T806 83-91 CHEBI_PR_EXT:protein denotes proteins
T807 99-107 CHEBI_PR_EXT:glucagon denotes glucagon
T808 108-116 SO_EXT:0000167 denotes promoter
T810 141-154,179-183 GO:0010467 denotes expression of gene
T811 160-170 UBERON:0001264 denotes pancreatic
T812 171-178 CHEBI_GO_EXT:hormone denotes hormone
T813 179-183 SO_EXT:0000704 denotes gene
T814 264-272 CHEBI_PR_EXT:protein denotes proteins
T815 292-296 PR_EXT:000012318 denotes PAX6
T816 306-314 SO_EXT:biological_sequence denotes sequence
T817 396-402 SO_EXT:0000417 denotes domain
T818 409-420 CHEBI_SO_EXT:amino_acid denotes amino acids
T819 428-438 CHEBI_SO_EXT:C_terminus_or_C_terminal_region denotes C-terminal
T820 450-454 PR_EXT:000012318 denotes PAX6
T821 455-462 CHEBI_PR_EXT:protein denotes protein
T822 483-488 UBERON:0000955 denotes brain
T823 507-514 CHEBI_SO_EXT:peptide_or_peptide_region denotes peptide
T824 525-530 NCBITaxon_EXT:yeast denotes yeast

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T648 10-19 GO:0065007 denotes modulates
T649 20-24 PR:000012318 denotes PAX6
T650 43-51 CL:0000540 denotes neuronal
T651 108-116 SO:0000167 denotes promoter
T653 141-154,179-183 GO:0010467 denotes expression of gene
T654 160-170 UBERON:0001264 denotes pancreatic
T655 179-183 SO:0000704 denotes gene
T656 292-296 PR:000012318 denotes PAX6
T657 396-402 SO:0000417 denotes domain
T658 450-454 PR:000012318 denotes PAX6
T659 483-488 UBERON:0000955 denotes brain