PMC:1208879 / 305-765
Annnotations
craft-sa-dev
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T220 | 12-16 | VBP | denotes | have |
| T231 | 7-11 | NN | denotes | gene |
| T232 | 2-6 | NN | denotes | PAX6 |
| T233 | 17-30 | NNS | denotes | malformations |
| T234 | 31-33 | IN | denotes | of |
| T235 | 34-37 | DT | denotes | the |
| T236 | 38-41 | NN | denotes | eye |
| T237 | 42-45 | CC | denotes | and |
| T238 | 46-51 | NN | denotes | brain |
| T239 | 51-52 | . | denotes | . |
| T240 | 52-196 | sentence | denotes | Little is known about the interactions of PAX6 with other proteins, so we carried out a systematic screen for proteins that interact with PAX6. |
| T241 | 53-59 | NN | denotes | Little |
| T242 | 63-68 | VBN | denotes | known |
| T243 | 60-62 | VBZ | denotes | is |
| T244 | 69-74 | IN | denotes | about |
| T245 | 75-78 | DT | denotes | the |
| T246 | 79-91 | NNS | denotes | interactions |
| T247 | 92-94 | IN | denotes | of |
| T248 | 95-99 | NN | denotes | PAX6 |
| T249 | 100-104 | IN | denotes | with |
| T250 | 105-110 | JJ | denotes | other |
| T251 | 111-119 | NN | denotes | proteins |
| T252 | 119-121 | , | denotes | , |
| T253 | 121-123 | CC | denotes | so |
| T254 | 124-126 | PRP | denotes | we |
| T255 | 127-134 | VBD | denotes | carried |
| T256 | 135-138 | RP | denotes | out |
| T257 | 139-140 | DT | denotes | a |
| T258 | 152-158 | NN | denotes | screen |
| T259 | 141-151 | JJ | denotes | systematic |
| T260 | 159-162 | IN | denotes | for |
| T261 | 163-171 | NN | denotes | proteins |
| T262 | 172-176 | WDT | denotes | that |
| T263 | 177-185 | VBP | denotes | interact |
| T264 | 186-190 | IN | denotes | with |
| T265 | 191-195 | NN | denotes | PAX6 |
| T266 | 195-196 | . | denotes | . |
| T267 | 196-205 | sentence | denotes | Results |
| T268 | 198-205 | NNS | denotes | Results |
| T269 | 205-321 | sentence | denotes | We used bioinformatics techniques to characterise a highly conserved peptide at the C-terminus of the PAX6 protein. |
| T270 | 206-208 | PRP | denotes | We |
| T271 | 209-213 | VBD | denotes | used |
| T272 | 214-228 | NN | denotes | bioinformatics |
| T273 | 229-239 | NNS | denotes | techniques |
| T274 | 240-242 | TO | denotes | to |
| T275 | 243-255 | VB | denotes | characterise |
| T276 | 256-257 | DT | denotes | a |
| T277 | 275-282 | NN | denotes | peptide |
| T278 | 258-264 | RB | denotes | highly |
| T279 | 265-274 | VBN | denotes | conserved |
| T280 | 283-285 | IN | denotes | at |
| T281 | 286-289 | DT | denotes | the |
| T282 | 292-300 | NN | denotes | terminus |
| T283 | 290-291 | NN | denotes | C |
| T284 | 291-292 | HYPH | denotes | - |
| T285 | 301-303 | IN | denotes | of |
| T286 | 304-307 | DT | denotes | the |
| T287 | 313-320 | NN | denotes | protein |
| T288 | 308-312 | NN | denotes | PAX6 |
| T289 | 320-321 | . | denotes | . |
| T291 | 322-327 | NN | denotes | Yeast |
| T292 | 347-354 | NNS | denotes | screens |
| T293 | 328-331 | CD | denotes | two |
| T294 | 332-338 | NN | denotes | hybrid |
| T295 | 331-332 | HYPH | denotes | - |
| T296 | 339-346 | NN | denotes | library |
| T297 | 365-372 | VBN | denotes | carried |
| T298 | 355-359 | VBD | denotes | were |
| T299 | 360-364 | RB | denotes | then |
| T300 | 373-376 | RP | denotes | out |
| T301 | 377-379 | TO | denotes | to |
| T302 | 380-388 | VB | denotes | identify |
| T303 | 389-394 | NN | denotes | brain |
| T304 | 395-404 | VBN | denotes | expressed |
| T305 | 394-395 | HYPH | denotes | - |
| T306 | 405-413 | NN | denotes | proteins |
| T307 | 414-418 | WDT | denotes | that |
| T308 | 419-427 | VBP | denotes | interact |
| T309 | 428-432 | IN | denotes | with |
| T310 | 433-436 | DT | denotes | the |
| T311 | 448-455 | NN | denotes | peptide |
| T312 | 437-438 | NN | denotes | C |
| T313 | 439-447 | JJ | denotes | terminal |
| T314 | 438-439 | HYPH | denotes | - |
| T315 | 456-459 | CC | denotes | and |
| R49 | T232 | T231 | compound | PAX6,gene |
| R73 | T258 | T255 | dobj | screen,carried |
| R74 | T259 | T258 | amod | systematic,screen |
| R88 | T277 | T275 | dobj | peptide,characterise |
| R89 | T278 | T279 | advmod | highly,conserved |
| R90 | T279 | T277 | amod | conserved,peptide |
| R93 | T282 | T280 | pobj | terminus,at |
| R94 | T283 | T282 | compound | C,terminus |
| R95 | T284 | T282 | punct | -,terminus |
| R98 | T287 | T285 | pobj | protein,of |
| R99 | T288 | T287 | compound | PAX6,protein |
| R102 | T292 | T297 | nsubjpass | screens,carried |
| R103 | T293 | T294 | nummod | two,hybrid |
| R105 | T295 | T294 | punct | -,hybrid |
| R106 | T296 | T292 | compound | library,screens |
| R113 | T304 | T306 | amod | expressed,proteins |
| R114 | T305 | T304 | punct | -,expressed |
| R120 | T311 | T309 | pobj | peptide,with |
| R121 | T312 | T313 | npadvmod | C,terminal |
| R123 | T314 | T313 | punct | -,terminal |
| R50 | T233 | T220 | dobj | malformations,have |
| R51 | T234 | T233 | prep | of,malformations |
| R52 | T235 | T236 | det | the,eye |
| R53 | T236 | T234 | pobj | eye,of |
| R54 | T237 | T236 | cc | and,eye |
| R55 | T238 | T236 | conj | brain,eye |
| R56 | T239 | T220 | punct | .,have |
| R57 | T241 | T242 | nsubjpass | Little,known |
| R58 | T243 | T242 | auxpass | is,known |
| R59 | T244 | T242 | prep | about,known |
| R60 | T245 | T246 | det | the,interactions |
| R61 | T246 | T244 | pobj | interactions,about |
| R62 | T247 | T246 | prep | of,interactions |
| R63 | T248 | T247 | pobj | PAX6,of |
| R64 | T249 | T246 | prep | with,interactions |
| R65 | T250 | T251 | amod | other,proteins |
| R66 | T251 | T249 | pobj | proteins,with |
| R67 | T252 | T242 | punct | ", ",known |
| R68 | T253 | T242 | cc | so,known |
| R69 | T254 | T255 | nsubj | we,carried |
| R70 | T255 | T242 | conj | carried,known |
| R71 | T256 | T255 | prt | out,carried |
| R72 | T257 | T258 | det | a,screen |
| R75 | T260 | T258 | prep | for,screen |
| R76 | T261 | T260 | pobj | proteins,for |
| R77 | T262 | T263 | dep | that,interact |
| R78 | T263 | T261 | relcl | interact,proteins |
| R79 | T264 | T263 | prep | with,interact |
| R80 | T265 | T264 | pobj | PAX6,with |
| R81 | T266 | T255 | punct | .,carried |
| R82 | T270 | T271 | nsubj | We,used |
| R83 | T272 | T273 | compound | bioinformatics,techniques |
| R84 | T273 | T271 | dobj | techniques,used |
| R85 | T274 | T275 | aux | to,characterise |
| R86 | T275 | T271 | advcl | characterise,used |
| R87 | T276 | T277 | det | a,peptide |
| R91 | T280 | T275 | prep | at,characterise |
| R92 | T281 | T282 | det | the,terminus |
| R96 | T285 | T282 | prep | of,terminus |
| R97 | T286 | T287 | det | the,protein |
| R100 | T289 | T271 | punct | .,used |
| R101 | T291 | T292 | nmod | Yeast,screens |
| R104 | T294 | T292 | compound | hybrid,screens |
| R107 | T298 | T297 | auxpass | were,carried |
| R108 | T299 | T297 | advmod | then,carried |
| R109 | T300 | T297 | prt | out,carried |
| R110 | T301 | T302 | aux | to,identify |
| R111 | T302 | T297 | advcl | identify,carried |
| R112 | T303 | T304 | npadvmod | brain,expressed |
| R115 | T306 | T302 | dobj | proteins,identify |
| R116 | T307 | T308 | dep | that,interact |
| R117 | T308 | T306 | relcl | interact,proteins |
| R118 | T309 | T308 | prep | with,interact |
| R119 | T310 | T311 | det | the,peptide |
| R122 | T313 | T311 | amod | terminal,peptide |
| R124 | T315 | T309 | cc | and,with |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T122 | 2-6 | PR_EXT:000012318 | denotes | PAX6 |
| T123 | 7-11 | SO_EXT:0000704 | denotes | gene |
| T124 | 38-41 | UBERON:0000970 | denotes | eye |
| T125 | 46-51 | UBERON:0000955 | denotes | brain |
| T126 | 95-99 | PR_EXT:000012318 | denotes | PAX6 |
| T127 | 111-119 | CHEBI_PR_EXT:protein | denotes | proteins |
| T128 | 163-171 | CHEBI_PR_EXT:protein | denotes | proteins |
| T129 | 191-195 | PR_EXT:000012318 | denotes | PAX6 |
| T130 | 265-274 | SO_EXT:biological_conservation_process_or_quality | denotes | conserved |
| T131 | 275-282 | CHEBI_SO_EXT:peptide_or_peptide_region | denotes | peptide |
| T132 | 290-300 | CHEBI_SO_EXT:C_terminus_or_C_terminal_region | denotes | C-terminus |
| T133 | 308-312 | PR_EXT:000012318 | denotes | PAX6 |
| T134 | 313-320 | CHEBI_PR_EXT:protein | denotes | protein |
| T135 | 322-327 | NCBITaxon_EXT:yeast | denotes | Yeast |
| T136 | 389-394 | UBERON:0000955 | denotes | brain |
| T137 | 395-404 | GO:0010467 | denotes | expressed |
| T138 | 405-413 | CHEBI_PR_EXT:protein | denotes | proteins |
| T139 | 437-447 | CHEBI_SO_EXT:C_terminus_or_C_terminal_region | denotes | C-terminal |
| T140 | 448-455 | CHEBI_SO_EXT:peptide_or_peptide_region | denotes | peptide |
craft-ca-core-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T73 | 2-6 | PR:000012318 | denotes | PAX6 |
| T74 | 7-11 | SO:0000704 | denotes | gene |
| T75 | 38-41 | UBERON:0000970 | denotes | eye |
| T76 | 46-51 | UBERON:0000955 | denotes | brain |
| T77 | 95-99 | PR:000012318 | denotes | PAX6 |
| T78 | 191-195 | PR:000012318 | denotes | PAX6 |
| T79 | 308-312 | PR:000012318 | denotes | PAX6 |
| T80 | 389-394 | UBERON:0000955 | denotes | brain |
| T81 | 395-404 | GO:0010467 | denotes | expressed |