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PMC:1208879 / 25297-25698 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T6664 400-401 . denotes .
T6663 399-400 -RRB- denotes ]
T6662 396-397 , denotes ,
T6661 394-396 CD denotes 25
T6660 397-399 CD denotes 26
T6659 393-394 -LRB- denotes [
T6658 376-385 NN denotes consensus
T6657 370-375 NN denotes JPRED
T6656 386-392 NN denotes method
T6655 366-369 DT denotes the
T6654 360-365 VBG denotes using
T6653 346-349 VBD denotes was
T6652 350-359 VBN denotes performed
T6651 335-345 NN denotes prediction
T6650 325-334 NN denotes structure
T6649 315-324 JJ denotes Secondary
T6648 314-401 sentence denotes Secondary structure prediction was performed using the JPRED consensus method [25,26].
T6647 313-314 . denotes .
T6646 312-313 -RRB- denotes ]
T6645 310-312 CD denotes 24
T6644 309-310 -LRB- denotes [
T6643 301-308 NNP denotes CLUSTAL
T6642 295-300 VBG denotes using
T6641 282-286 VBD denotes were
T6640 277-281 NN denotes PAX6
T6639 271-276 JJ denotes human
T6638 268-270 IN denotes of
T6637 258-259 HYPH denotes -
T6636 257-258 NN denotes C
T6635 259-267 NN denotes terminus
T6634 253-256 DT denotes the
T6633 250-252 IN denotes to
T6632 239-249 JJ denotes homologous
T6631 232-238 RB denotes highly
T6630 227-231 VBD denotes were
T6629 222-226 WDT denotes that
T6628 287-294 VBN denotes aligned
T6627 212-221 NNS denotes sequences
T6626 204-211 NN denotes Protein
T6625 203-314 sentence denotes Protein sequences that were highly homologous to the C-terminus of human PAX6 were aligned using CLUSTAL [24].
T6624 202-203 . denotes .
T6623 201-202 -RRB- denotes ]
T6622 199-201 CD denotes 24
T6621 198-199 -LRB- denotes [
T6620 189-197 NNP denotes Research
T6619 180-188 NNP denotes Genomics
T6618 176-179 IN denotes for
T6617 160-168 NNP denotes Franklin
T6616 151-159 NNP denotes Rosalind
T6615 169-175 NNP denotes Centre
T6614 147-150 DT denotes the
T6613 144-146 IN denotes at
T6612 116-130 NNP denotes Bioinformatics
T6611 131-143 NNP denotes Applications
T6610 112-115 DT denotes the
T6609 104-111 IN denotes through
T6608 94-103 JJ denotes available
T6607 80-85 NNP denotes BLAST
T6606 86-93 NN denotes program
T6605 76-79 DT denotes the
T6604 70-75 VBG denotes using
T6603 66-69 RP denotes out
T6602 53-57 VBD denotes were
T6601 58-65 VBN denotes carried
T6600 35-43 NN denotes database
T6599 44-52 NNS denotes searches
T6598 26-34 NN denotes Sequence
T6597 25-203 sentence denotes Sequence database searches were carried out using the BLAST program available through the Bioinformatics Applications at the Rosalind Franklin Centre for Genomics Research [24].
T6596 15-25 NNS denotes techniques
T6595 0-14 NN denotes Bioinformatics
R4137 T6595 T6596 compound Bioinformatics,techniques
R4138 T6598 T6599 compound Sequence,searches
R4139 T6599 T6601 nsubjpass searches,carried
R4140 T6600 T6599 compound database,searches
R4141 T6602 T6601 auxpass were,carried
R4142 T6603 T6601 prt out,carried
R4143 T6604 T6601 advcl using,carried
R4144 T6605 T6606 det the,program
R4145 T6606 T6604 dobj program,using
R4146 T6607 T6606 compound BLAST,program
R4147 T6608 T6606 amod available,program
R4148 T6609 T6608 prep through,available
R4149 T6610 T6611 det the,Applications
R4150 T6611 T6609 pobj Applications,through
R4151 T6612 T6611 compound Bioinformatics,Applications
R4152 T6613 T6611 prep at,Applications
R4153 T6614 T6615 det the,Centre
R4154 T6615 T6613 pobj Centre,at
R4155 T6616 T6617 compound Rosalind,Franklin
R4156 T6617 T6615 compound Franklin,Centre
R4157 T6618 T6615 prep for,Centre
R4158 T6619 T6620 compound Genomics,Research
R4159 T6620 T6618 pobj Research,for
R4160 T6621 T6622 punct [,24
R4161 T6622 T6601 parataxis 24,carried
R4162 T6623 T6622 punct ],24
R4163 T6624 T6601 punct .,carried
R4164 T6626 T6627 compound Protein,sequences
R4165 T6627 T6628 nsubjpass sequences,aligned
R4166 T6629 T6630 dep that,were
R4167 T6630 T6627 relcl were,sequences
R4168 T6631 T6632 advmod highly,homologous
R4169 T6632 T6630 acomp homologous,were
R4170 T6633 T6632 prep to,homologous
R4171 T6634 T6635 det the,terminus
R4172 T6635 T6633 pobj terminus,to
R4173 T6636 T6635 compound C,terminus
R4174 T6637 T6635 punct -,terminus
R4175 T6638 T6635 prep of,terminus
R4176 T6639 T6640 amod human,PAX6
R4177 T6640 T6638 pobj PAX6,of
R4178 T6641 T6628 auxpass were,aligned
R4179 T6642 T6628 advcl using,aligned
R4180 T6643 T6642 dobj CLUSTAL,using
R4181 T6644 T6645 punct [,24
R4182 T6645 T6628 parataxis 24,aligned
R4183 T6646 T6645 punct ],24
R4184 T6647 T6628 punct .,aligned
R4185 T6649 T6650 amod Secondary,structure
R4186 T6650 T6651 compound structure,prediction
R4187 T6651 T6652 nsubjpass prediction,performed
R4188 T6653 T6652 auxpass was,performed
R4189 T6654 T6652 advcl using,performed
R4190 T6655 T6656 det the,method
R4191 T6656 T6654 dobj method,using
R4192 T6657 T6656 compound JPRED,method
R4193 T6658 T6656 compound consensus,method
R4194 T6659 T6660 punct [,26
R4195 T6660 T6652 parataxis 26,performed
R4196 T6661 T6660 nummod 25,26
R4197 T6662 T6660 punct ",",26
R4198 T6663 T6660 punct ],26
R4199 T6664 T6652 punct .,performed

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6594 376-385 SO:0000993 denotes consensus
T6593 277-281 PR_EXT:000012318 denotes PAX6
T6592 271-276 NCBITaxon:9606 denotes human
T6591 257-267 CHEBI_SO_EXT:C_terminus_or_C_terminal_region denotes C-terminus
T6590 239-249 SO:0000857 denotes homologous
T6589 212-221 SO_EXT:biological_sequence denotes sequences
T6588 204-211 CHEBI_PR_EXT:protein denotes Protein
T6587 26-34 SO_EXT:biological_sequence denotes Sequence

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6586 376-385 SO:0000993 denotes consensus
T6585 277-281 PR:000012318 denotes PAX6
T6584 271-276 NCBITaxon:9606 denotes human
T6583 239-249 SO:0000857 denotes homologous