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PMC:1208879 / 21775-22712 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T6038 830-832 , denotes ,
T6037 826-830 NN denotes PAX6
T6036 823-825 IN denotes of
T6035 809-822 NN denotes co-expression
T6034 800-808 VBD denotes detected
T6033 797-799 PRP denotes We
T6032 796-937 sentence denotes We detected co-expression of PAX6, HOMER3, DNCL1 and TRIM11 by RT-PCR in human adult brain RNA (IH, L Harrison and A Brown, data not shown).
T6031 795-796 . denotes .
T6030 794-795 -RRB- denotes ]
T6029 791-792 , denotes ,
T6028 790-791 CD denotes 8
T6027 789-790 , denotes ,
T6026 788-789 CD denotes 7
T6025 787-788 , denotes ,
T6024 786-787 CD denotes 2
T6023 792-794 CD denotes 10
T6022 785-786 -LRB- denotes [
T6021 772-778 NN denotes tissue
T6020 779-784 NN denotes level
T6019 768-771 DT denotes the
T6018 765-767 IN denotes at
T6017 760-764 NN denotes PAX6
T6016 755-759 IN denotes with
T6015 728-733 CD denotes three
T6014 734-745 NNS denotes interactors
T6013 724-727 DT denotes all
T6012 721-723 IN denotes of
T6011 710-720 NN denotes expression
T6010 706-709 DT denotes the
T6009 746-754 VBZ denotes overlaps
T6008 701-705 RB denotes Thus
T6007 700-796 sentence denotes Thus the expression of all three interactors overlaps with PAX6 at the tissue level [2,7,8,10].
T6006 699-700 . denotes .
T6005 698-699 -RRB- denotes ]
T6004 695-696 , denotes ,
T6003 693-695 CD denotes 44
T6002 696-698 CD denotes 38
T6001 692-693 -LRB- denotes [
T6000 686-691 NN denotes brain
T5999 682-685 DT denotes the
T5998 674-681 VBP denotes include
T5997 669-673 WDT denotes that
T5996 650-660 NN denotes expression
T5995 661-668 NNS denotes domains
T5994 645-649 JJ denotes wide
T5993 635-639 DT denotes both
T5992 628-634 NN denotes TRIM11
T5991 624-627 CC denotes and
T5990 640-644 VBP denotes have
T5989 618-623 NN denotes DNCL1
T5988 617-700 sentence denotes DNCL1 and TRIM11 both have wide expression domains that include the brain [44,38].
T5987 616-617 . denotes .
T5986 615-616 -RRB- denotes ]
T5985 613-615 CD denotes 39
T5984 612-613 -LRB- denotes [
T5983 601-611 NN denotes cerebellum
T5982 597-600 CC denotes and
T5981 585-596 NN denotes hippocampus
T5980 583-585 , denotes ,
T5979 574-583 NN denotes forebrain
T5978 570-573 DT denotes the
T5977 567-569 IN denotes in
T5976 558-560 VBZ denotes is
T5975 555-557 PRP denotes it
T5974 561-566 VBN denotes found
T5973 549-554 WRB denotes where
T5972 543-548 NN denotes brain
T5971 540-542 IN denotes in
T5970 527-531 VBN denotes been
T5969 520-526 RB denotes mainly
T5968 516-519 VBZ denotes has
T5967 532-539 VBN denotes studied
T5966 513-515 PRP denotes it
T5965 509-512 CC denotes but
T5964 504-508 NN denotes lung
T5963 500-503 CC denotes and
T5962 493-499 NN denotes thymus
T5961 490-492 IN denotes in
T5960 476-480 VBN denotes been
T5959 472-475 VBZ denotes has
T5958 461-471 NN denotes expression
T5957 454-460 NN denotes HOMER3
T5956 452-454 , denotes ,
T5955 440-446 NN denotes tissue
T5954 447-452 NN denotes level
T5953 436-439 DT denotes the
T5952 481-489 VBN denotes detected
T5951 433-435 IN denotes At
T5950 432-617 sentence denotes At the tissue level, HOMER3 expression has been detected in thymus and lung but it has mainly been studied in brain where it is found in the forebrain, hippocampus and cerebellum [39].
T5949 431-432 . denotes .
T5948 426-431 NN denotes DNCL1
T5947 422-425 CC denotes and
T5946 415-421 NN denotes TRIM11
T5945 410-414 IN denotes with
T5944 395-400 MD denotes could
T5943 390-394 NN denotes PAX6
T5942 382-389 JJ denotes nuclear
T5941 401-409 VB denotes interact
T5940 376-381 IN denotes while
T5939 374-376 , denotes ,
T5938 360-365 CD denotes three
T5937 366-374 NN denotes proteins
T5936 356-359 DT denotes all
T5935 351-355 IN denotes with
T5934 330-341 RB denotes potentially
T5933 324-329 MD denotes could
T5932 319-323 NN denotes PAX6
T5931 307-318 JJ denotes cytoplasmic
T5930 342-350 VB denotes interact
T5929 297-306 RB denotes Therefore
T5928 296-432 sentence denotes Therefore cytoplasmic PAX6 could potentially interact with all three proteins, while nuclear PAX6 could interact with TRIM11 and DNCL1.
T5927 295-296 . denotes .
T5926 294-295 -RRB- denotes ]
T5925 292-294 CD denotes 38
T5924 291-292 -LRB- denotes [
T5923 279-290 JJ denotes cytoplasmic
T5922 275-278 CC denotes and
T5921 267-274 JJ denotes nuclear
T5920 262-266 CC denotes both
T5919 259-261 VBZ denotes is
T5918 252-258 NN denotes TRIM11
T5917 248-251 CC denotes and
T5916 246-248 , denotes ,
T5915 245-246 -RRB- denotes ]
T5914 243-245 CD denotes 51
T5913 242-243 -LRB- denotes [
T5912 228-232 VBN denotes been
T5911 224-227 VBZ denotes has
T5910 211-223 NN denotes localisation
T5909 203-210 JJ denotes nuclear
T5908 233-241 VBN denotes reported
T5907 194-202 IN denotes although
T5906 192-194 , denotes ,
T5905 181-192 JJ denotes cytoplasmic
T5904 173-180 RB denotes chiefly
T5903 170-172 VBZ denotes is
T5902 164-169 NN denotes DNCL1
T5901 162-164 , denotes ,
T5900 161-162 -RRB- denotes ]
T5899 159-161 CD denotes 39
T5898 158-159 -LRB- denotes [
T5897 148-157 NN denotes cytoplasm
T5896 144-147 DT denotes the
T5895 140-143 CC denotes and
T5894 136-139 NN denotes PSD
T5893 132-135 DT denotes the
T5892 124-131 IN denotes between
T5891 114-123 NN denotes interface
T5890 110-113 DT denotes the
T5889 107-109 IN denotes at
T5888 87-100 RB denotes predominantly
T5887 84-86 VBZ denotes is
T5886 77-83 NN denotes HOMER3
T5885 75-77 , denotes ,
T5884 55-66 VBG denotes interacting
T5883 46-54 JJ denotes putative
T5882 67-75 NN denotes proteins
T5881 42-45 DT denotes the
T5880 39-41 IN denotes of
T5879 14-25 JJ denotes subcellular
T5878 26-38 NN denotes localisation
T5877 10-13 DT denotes the
T5876 101-106 VBN denotes found
T5875 0-9 VBG denotes Regarding
T6066 936-937 . denotes .
T6065 935-936 -RRB- denotes )
T6064 926-929 RB denotes not
T6063 930-935 VBN denotes shown
T6062 921-925 NNS denotes data
T6061 919-921 , denotes ,
T6060 914-919 NNP denotes Brown
T6059 912-913 NNP denotes A
T6058 908-911 CC denotes and
T6057 899-907 NNP denotes Harrison
T6056 897-898 NNP denotes L
T6055 895-897 , denotes ,
T6054 893-895 NNP denotes IH
T6053 892-893 -LRB- denotes (
T6052 882-887 NN denotes brain
T6051 876-881 JJ denotes adult
T6050 888-891 NN denotes RNA
T6049 870-875 JJ denotes human
T6048 867-869 IN denotes in
T6047 862-863 HYPH denotes -
T6046 863-866 NN denotes PCR
T6045 860-862 NN denotes RT
T6044 857-859 IN denotes by
T6043 850-856 NN denotes TRIM11
T6042 846-849 CC denotes and
T6041 840-845 NN denotes DNCL1
T6040 838-840 , denotes ,
T6039 832-838 NN denotes HOMER3
R3529 T5875 T5876 prep Regarding,found
R3530 T5877 T5878 det the,localisation
R3531 T5878 T5875 pobj localisation,Regarding
R3532 T5879 T5878 amod subcellular,localisation
R3533 T5880 T5878 prep of,localisation
R3534 T5881 T5882 det the,proteins
R3535 T5882 T5880 pobj proteins,of
R3536 T5883 T5882 amod putative,proteins
R3537 T5884 T5882 amod interacting,proteins
R3538 T5885 T5876 punct ", ",found
R3539 T5886 T5876 nsubjpass HOMER3,found
R3540 T5887 T5876 auxpass is,found
R3541 T5888 T5876 advmod predominantly,found
R3542 T5889 T5876 prep at,found
R3543 T5890 T5891 det the,interface
R3544 T5891 T5889 pobj interface,at
R3545 T5892 T5891 prep between,interface
R3546 T5893 T5894 det the,PSD
R3547 T5894 T5892 pobj PSD,between
R3548 T5895 T5894 cc and,PSD
R3549 T5896 T5897 det the,cytoplasm
R3550 T5897 T5894 conj cytoplasm,PSD
R3551 T5898 T5899 punct [,39
R3552 T5899 T5876 parataxis 39,found
R3553 T5900 T5899 punct ],39
R3554 T5901 T5876 punct ", ",found
R3555 T5902 T5903 nsubj DNCL1,is
R3556 T5903 T5876 conj is,found
R3557 T5904 T5905 advmod chiefly,cytoplasmic
R3558 T5905 T5903 acomp cytoplasmic,is
R3559 T5906 T5903 punct ", ",is
R3560 T5907 T5908 mark although,reported
R3561 T5908 T5903 advcl reported,is
R3562 T5909 T5910 amod nuclear,localisation
R3563 T5910 T5908 nsubjpass localisation,reported
R3564 T5911 T5908 aux has,reported
R3565 T5912 T5908 auxpass been,reported
R3566 T5913 T5914 punct [,51
R3567 T5914 T5903 parataxis 51,is
R3568 T5960 T5952 auxpass been,detected
R3569 T5915 T5914 punct ],51
R3570 T5961 T5952 prep in,detected
R3571 T5916 T5903 punct ", ",is
R3572 T5962 T5961 pobj thymus,in
R3573 T5917 T5903 cc and,is
R3574 T5963 T5962 cc and,thymus
R3575 T5964 T5962 conj lung,thymus
R3576 T5918 T5919 nsubj TRIM11,is
R3577 T5965 T5952 cc but,detected
R3578 T5919 T5903 conj is,is
R3579 T5920 T5921 preconj both,nuclear
R3580 T5966 T5967 nsubjpass it,studied
R3581 T5921 T5919 acomp nuclear,is
R3582 T5967 T5952 conj studied,detected
R3583 T5968 T5967 aux has,studied
R3584 T5969 T5967 advmod mainly,studied
R3585 T5922 T5921 cc and,nuclear
R3586 T5970 T5967 auxpass been,studied
R3587 T5971 T5967 prep in,studied
R3588 T5923 T5921 conj cytoplasmic,nuclear
R3589 T5972 T5971 pobj brain,in
R3590 T5973 T5974 advmod where,found
R3591 T5974 T5972 relcl found,brain
R3592 T5924 T5925 punct [,38
R3593 T5975 T5974 nsubjpass it,found
R3594 T5976 T5974 auxpass is,found
R3595 T5925 T5919 parataxis 38,is
R3596 T5977 T5974 prep in,found
R3597 T5978 T5979 det the,forebrain
R3598 T5979 T5977 pobj forebrain,in
R3599 T5980 T5979 punct ", ",forebrain
R3600 T5981 T5979 conj hippocampus,forebrain
R3601 T5982 T5981 cc and,hippocampus
R3602 T5926 T5925 punct ],38
R3603 T5983 T5981 conj cerebellum,hippocampus
R3604 T5984 T5985 punct [,39
R3605 T5985 T5967 parataxis 39,studied
R3606 T5927 T5876 punct .,found
R3607 T5986 T5985 punct ],39
R3608 T5987 T5967 punct .,studied
R3609 T5929 T5930 advmod Therefore,interact
R3610 T5989 T5990 nsubj DNCL1,have
R3611 T5991 T5989 cc and,DNCL1
R3612 T5931 T5932 amod cytoplasmic,PAX6
R3613 T5992 T5989 conj TRIM11,DNCL1
R3614 T5993 T5989 appos both,DNCL1
R3615 T5994 T5995 amod wide,domains
R3616 T5995 T5990 dobj domains,have
R3617 T5996 T5995 compound expression,domains
R3618 T5932 T5930 nsubj PAX6,interact
R3619 T5997 T5998 dep that,include
R3620 T5998 T5995 relcl include,domains
R3621 T5999 T6000 det the,brain
R3622 T5933 T5930 aux could,interact
R3623 T6000 T5998 dobj brain,include
R3624 T6001 T6002 punct [,38
R3625 T5934 T5930 advmod potentially,interact
R3626 T6002 T5990 parataxis 38,have
R3627 T6003 T6002 nummod 44,38
R3628 T6004 T6002 punct ",",38
R3629 T6005 T6002 punct ],38
R3630 T5935 T5930 prep with,interact
R3631 T6006 T5990 punct .,have
R3632 T5936 T5937 det all,proteins
R3633 T6008 T6009 advmod Thus,overlaps
R3634 T6010 T6011 det the,expression
R3635 T5937 T5935 pobj proteins,with
R3636 T6011 T6009 nsubj expression,overlaps
R3637 T6012 T6011 prep of,expression
R3638 T6013 T6014 det all,interactors
R3639 T5938 T5937 nummod three,proteins
R3640 T6014 T6012 pobj interactors,of
R3641 T6015 T6014 nummod three,interactors
R3642 T6016 T6009 prep with,overlaps
R3643 T6017 T6016 pobj PAX6,with
R3644 T5939 T5930 punct ", ",interact
R3645 T6018 T6009 prep at,overlaps
R3646 T6019 T6020 det the,level
R3647 T5940 T5941 mark while,interact
R3648 T6020 T6018 pobj level,at
R3649 T6021 T6020 compound tissue,level
R3650 T6022 T6023 punct [,10
R3651 T6023 T6009 parataxis 10,overlaps
R3652 T6024 T6023 nummod 2,10
R3653 T6025 T6023 punct ",",10
R3654 T5941 T5930 advcl interact,interact
R3655 T6026 T6023 nummod 7,10
R3656 T6027 T6023 punct ",",10
R3657 T6028 T6023 nummod 8,10
R3658 T5942 T5943 amod nuclear,PAX6
R3659 T6029 T6023 punct ",",10
R3660 T6030 T6023 punct ],10
R3661 T6031 T6009 punct .,overlaps
R3662 T5943 T5941 nsubj PAX6,interact
R3663 T6033 T6034 nsubj We,detected
R3664 T5944 T5941 aux could,interact
R3665 T6035 T6034 dobj co-expression,detected
R3666 T5945 T5941 prep with,interact
R3667 T6036 T6035 prep of,co-expression
R3668 T6037 T6036 pobj PAX6,of
R3669 T6038 T6037 punct ", ",PAX6
R3670 T5946 T5945 pobj TRIM11,with
R3671 T6039 T6037 conj HOMER3,PAX6
R3672 T5947 T5946 cc and,TRIM11
R3673 T6040 T6039 punct ", ",HOMER3
R3674 T5948 T5946 conj DNCL1,TRIM11
R3675 T6041 T6039 conj DNCL1,HOMER3
R3676 T6042 T6041 cc and,DNCL1
R3677 T5949 T5930 punct .,interact
R3678 T6043 T6041 conj TRIM11,DNCL1
R3679 T6044 T6034 prep by,detected
R3680 T6045 T6046 compound RT,PCR
R3681 T5951 T5952 prep At,detected
R3682 T6046 T6044 pobj PCR,by
R3683 T6047 T6046 punct -,PCR
R3684 T6048 T6034 prep in,detected
R3685 T5953 T5954 det the,level
R3686 T6049 T6050 amod human,RNA
R3687 T6050 T6048 pobj RNA,in
R3688 T6051 T6050 amod adult,RNA
R3689 T6052 T6050 compound brain,RNA
R3690 T5954 T5951 pobj level,At
R3691 T6053 T6054 punct (,IH
R3692 T6054 T6034 parataxis IH,detected
R3693 T6055 T6054 punct ", ",IH
R3694 T5955 T5954 compound tissue,level
R3695 T6056 T6057 compound L,Harrison
R3696 T6057 T6054 conj Harrison,IH
R3697 T5956 T5952 punct ", ",detected
R3698 T6058 T6057 cc and,Harrison
R3699 T6059 T6060 compound A,Brown
R3700 T6060 T6057 conj Brown,Harrison
R3701 T5957 T5958 compound HOMER3,expression
R3702 T6061 T6054 punct ", ",IH
R3703 T6062 T6063 nsubj data,shown
R3704 T6063 T6054 ccomp shown,IH
R3705 T6064 T6063 neg not,shown
R3706 T6065 T6054 punct ),IH
R3707 T5958 T5952 nsubjpass expression,detected
R3708 T5959 T5952 aux has,detected
R3710 T6066 T6034 punct .,detected

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5003 870-875 NCBITaxon:9606 denotes human
T5002 860-862 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T5001 850-856 PR_EXT:000016642 denotes TRIM11
T5000 840-845 PR_EXT:000002325 denotes DNCL1
T4999 832-838 PR_EXT:000008680 denotes HOMER3
T4998 826-830 PR_EXT:000012318 denotes PAX6
T4997 812-822 GO:0010467 denotes expression
T4996 772-778 UBERON:0000479 denotes tissue
T4995 760-764 PR_EXT:000012318 denotes PAX6
T4994 710-720 GO:0010467 denotes expression
T4993 650-660 GO:0010467 denotes expression
T4992 628-634 PR_EXT:000016642 denotes TRIM11
T4991 618-623 PR_EXT:000002325 denotes DNCL1
T4990 601-611 UBERON:0002037 denotes cerebellum
T4989 585-596 UBERON_EXT:hippocampus_proper_or_hippocampal_formation denotes hippocampus
T4988 574-583 UBERON:0001890 denotes forebrain
T4987 543-548 UBERON:0000955 denotes brain
T4986 504-508 UBERON:0002048 denotes lung
T4985 493-499 UBERON:0002370 denotes thymus
T4984 461-471 GO:0010467 denotes expression
T4983 454-460 PR_EXT:000008680 denotes HOMER3
T4982 440-446 UBERON:0000479 denotes tissue
T4981 426-431 PR_EXT:000002325 denotes DNCL1
T4980 415-421 PR_EXT:000016642 denotes TRIM11
T4979 390-394 PR_EXT:000012318 denotes PAX6
T4978 382-389 GO:0005634 denotes nuclear
T4977 366-374 CHEBI_PR_EXT:protein denotes proteins
T4976 319-323 PR_EXT:000012318 denotes PAX6
T4975 307-318 GO:0005737 denotes cytoplasmic
T4974 279-290 GO:0005737 denotes cytoplasmic
T4973 267-274 GO:0005634 denotes nuclear
T4972 252-258 PR_EXT:000016642 denotes TRIM11
T4971 211-223 GO_PATO_EXT:biological_localization_process_or_quality denotes localisation
T4970 203-210 GO:0005634 denotes nuclear
T4969 181-192 GO:0005737 denotes cytoplasmic
T4968 164-169 PR_EXT:000002325 denotes DNCL1
T4967 148-157 GO:0005737 denotes cytoplasm
T4966 136-139 GO:0014069 denotes PSD
T4965 77-83 PR_EXT:000008680 denotes HOMER3
T4964 67-75 CHEBI_PR_EXT:protein denotes proteins
T4963 26-38 GO_PATO_EXT:biological_localization_process_or_quality denotes localisation
T4962 17-25 CL_GO_EXT:cell denotes cellular
T4961 14-25 GO_UBERON_EXT:cellular_component_or_cell_part denotes subcellular
T4907 686-691 UBERON:0000955 denotes brain
T5006 888-891 CHEBI_SO_EXT:RNA denotes RNA
T5005 882-887 UBERON:0000955 denotes brain
T5004 876-881 UBERON:0007023 denotes adult

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4728 882-887 UBERON:0000955 denotes brain
T4727 876-881 UBERON:0007023 denotes adult
T4726 870-875 NCBITaxon:9606 denotes human
T4725 850-856 PR:000016642 denotes TRIM11
T4724 840-845 PR:000002325 denotes DNCL1
T4723 832-838 PR:000008680 denotes HOMER3
T4722 826-830 PR:000012318 denotes PAX6
T4721 812-822 GO:0010467 denotes expression
T4720 772-778 UBERON:0000479 denotes tissue
T4719 760-764 PR:000012318 denotes PAX6
T4718 710-720 GO:0010467 denotes expression
T4717 686-691 UBERON:0000955 denotes brain
T4716 650-660 GO:0010467 denotes expression
T4715 628-634 PR:000016642 denotes TRIM11
T4714 618-623 PR:000002325 denotes DNCL1
T4713 601-611 UBERON:0002037 denotes cerebellum
T4712 574-583 UBERON:0001890 denotes forebrain
T4711 543-548 UBERON:0000955 denotes brain
T4710 504-508 UBERON:0002048 denotes lung
T4709 493-499 UBERON:0002370 denotes thymus
T4708 461-471 GO:0010467 denotes expression
T4707 454-460 PR:000008680 denotes HOMER3
T4706 440-446 UBERON:0000479 denotes tissue
T4705 426-431 PR:000002325 denotes DNCL1
T4704 415-421 PR:000016642 denotes TRIM11
T4703 390-394 PR:000012318 denotes PAX6
T4702 382-389 GO:0005634 denotes nuclear
T4701 319-323 PR:000012318 denotes PAX6
T4700 307-318 GO:0005737 denotes cytoplasmic
T4699 279-290 GO:0005737 denotes cytoplasmic
T4698 267-274 GO:0005634 denotes nuclear
T4697 252-258 PR:000016642 denotes TRIM11
T4696 203-210 GO:0005634 denotes nuclear
T4695 181-192 GO:0005737 denotes cytoplasmic
T4694 164-169 PR:000002325 denotes DNCL1
T4693 148-157 GO:0005737 denotes cytoplasm
T4692 136-139 GO:0014069 denotes PSD
T4691 77-83 PR:000008680 denotes HOMER3