PMC:1208879 / 16344-16951
Annnotations
craft-sa-dev
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4067 | 40-44 | VBN | denotes | been |
T4066 | 36-39 | VBZ | denotes | has |
T4065 | 34-35 | -RRB- | denotes | ) |
T4064 | 29-34 | NN | denotes | X423L |
T4063 | 28-29 | -LRB- | denotes | ( |
T4062 | 19-27 | NN | denotes | 1629insT |
T4061 | 45-53 | VBN | denotes | reported |
T4060 | 4-9 | JJ | denotes | third |
T4059 | 10-18 | NN | denotes | mutation |
T4058 | 0-3 | DT | denotes | The |
T4180 | 606-607 | . | denotes | . |
T4179 | 605-606 | -RRB- | denotes | ] |
T4178 | 603-605 | CD | denotes | 12 |
T4177 | 602-603 | -LRB- | denotes | [ |
T4176 | 593-601 | NN | denotes | epilepsy |
T4175 | 588-592 | IN | denotes | with |
T4174 | 576-587 | NN | denotes | association |
T4173 | 573-575 | IN | denotes | in |
T4172 | 567-569 | , | denotes | , |
T4171 | 553-567 | NN | denotes | polymicrogyria |
T4170 | 544-552 | JJ | denotes | temporal |
T4169 | 569-572 | CD | denotes | one |
T4168 | 540-543 | VBD | denotes | had |
T4167 | 531-539 | NNS | denotes | patients |
T4166 | 527-530 | CD | denotes | Two |
T4165 | 526-607 | sentence | denotes | Two patients had temporal polymicrogyria, one in association with epilepsy [12]. |
T4164 | 525-526 | . | denotes | . |
T4163 | 524-525 | -RRB- | denotes | ] |
T4162 | 522-524 | CD | denotes | 12 |
T4161 | 521-522 | -LRB- | denotes | [ |
T4160 | 515-520 | NNS | denotes | bulbs |
T4159 | 505-514 | JJ | denotes | olfactory |
T4158 | 501-504 | CC | denotes | and |
T4157 | 495-500 | NN | denotes | gland |
T4156 | 488-494 | JJ | denotes | pineal |
T4155 | 486-488 | , | denotes | , |
T4154 | 467-475 | JJ | denotes | anterior |
T4153 | 476-486 | NN | denotes | commissure |
T4152 | 463-466 | DT | denotes | the |
T4151 | 460-462 | IN | denotes | of |
T4150 | 449-459 | NN | denotes | hypoplasia |
T4149 | 446-448 | CC | denotes | or |
T4148 | 438-445 | NN | denotes | absence |
T4147 | 428-437 | VBG | denotes | including |
T4146 | 414-419 | NN | denotes | brain |
T4145 | 420-427 | NNS | denotes | defects |
T4144 | 405-413 | JJ | denotes | variable |
T4143 | 387-395 | NN | denotes | mutation |
T4142 | 382-386 | DT | denotes | this |
T4141 | 377-381 | IN | denotes | with |
T4140 | 368-376 | NNS | denotes | patients |
T4139 | 364-367 | CD | denotes | six |
T4138 | 361-363 | IN | denotes | of |
T4137 | 396-404 | VBD | denotes | revealed |
T4136 | 352-360 | NN | denotes | analysis |
T4135 | 348-351 | NN | denotes | MRI |
T4134 | 347-526 | sentence | denotes | MRI analysis of six patients with this mutation revealed variable brain defects including absence or hypoplasia of the anterior commissure, pineal gland and olfactory bulbs [12]. |
T4133 | 346-347 | . | denotes | . |
T4132 | 327-339 | JJ | denotes | untranslated |
T4131 | 325-326 | SYM | denotes | ' |
T4130 | 324-325 | CD | denotes | 3 |
T4129 | 340-346 | NN | denotes | region |
T4128 | 320-323 | DT | denotes | the |
T4127 | 315-319 | IN | denotes | into |
T4126 | 303-308 | NN | denotes | amino |
T4125 | 300-302 | CD | denotes | 35 |
T4124 | 292-299 | JJ | denotes | further |
T4123 | 309-314 | NNS | denotes | acids |
T4122 | 290-291 | DT | denotes | a |
T4121 | 286-289 | IN | denotes | for |
T4120 | 278-285 | VBZ | denotes | extends |
T4119 | 273-277 | WDT | denotes | that |
T4118 | 253-254 | HYPH | denotes | - |
T4117 | 254-262 | JJ | denotes | terminal |
T4116 | 252-253 | NN | denotes | C |
T4115 | 263-272 | NN | denotes | extension |
T4114 | 250-251 | DT | denotes | a |
T4113 | 245-249 | IN | denotes | with |
T4112 | 232-236 | NN | denotes | PAX6 |
T4111 | 225-231 | NN | denotes | length |
T4110 | 220-224 | JJ | denotes | full |
T4109 | 237-244 | NN | denotes | protein |
T4108 | 218-219 | DT | denotes | a |
T4107 | 208-217 | VBZ | denotes | generates |
T4106 | 204-207 | CC | denotes | and |
T4105 | 202-203 | -RRB- | denotes | ) |
T4104 | 199-202 | NN | denotes | TTA |
T4103 | 198-199 | -LRB- | denotes | ( |
T4102 | 184-191 | NN | denotes | leucine |
T4101 | 192-197 | NN | denotes | codon |
T4100 | 182-183 | DT | denotes | a |
T4099 | 179-181 | IN | denotes | to |
T4098 | 177-178 | -RRB- | denotes | ) |
T4097 | 174-177 | NN | denotes | TAA |
T4096 | 173-174 | -LRB- | denotes | ( |
T4095 | 162-166 | NN | denotes | stop |
T4094 | 167-172 | NN | denotes | codon |
T4093 | 158-161 | DT | denotes | the |
T4092 | 145-149 | CD | denotes | 1629 |
T4091 | 136-144 | NN | denotes | position |
T4090 | 133-135 | IN | denotes | at |
T4089 | 120-121 | NN | denotes | T |
T4088 | 113-119 | JJ | denotes | single |
T4087 | 122-132 | NN | denotes | nucleotide |
T4086 | 111-112 | DT | denotes | a |
T4085 | 108-110 | IN | denotes | of |
T4084 | 150-157 | VBZ | denotes | changes |
T4083 | 98-107 | NN | denotes | Insertion |
T4082 | 97-347 | sentence | denotes | Insertion of a single T nucleotide at position 1629 changes the stop codon (TAA) to a leucine codon (TTA) and generates a full length PAX6 protein with a C-terminal extension that extends for a further 35 amino acids into the 3' untranslated region. |
T4081 | 96-97 | . | denotes | . |
T4080 | 95-96 | -RRB- | denotes | ] |
T4079 | 92-93 | , | denotes | , |
T4078 | 90-92 | CD | denotes | 27 |
T4077 | 89-90 | , | denotes | , |
T4076 | 87-89 | CD | denotes | 12 |
T4075 | 86-87 | , | denotes | , |
T4074 | 84-86 | CD | denotes | 11 |
T4073 | 93-95 | CD | denotes | 33 |
T4072 | 83-84 | -LRB- | denotes | [ |
T4071 | 65-73 | NN | denotes | aniridia |
T4070 | 74-82 | NNS | denotes | patients |
T4069 | 57-64 | JJ | denotes | several |
T4068 | 54-56 | IN | denotes | in |
R2531 | T4058 | T4059 | det | The,mutation |
R2532 | T4059 | T4061 | nsubjpass | mutation,reported |
R2533 | T4060 | T4059 | amod | third,mutation |
R2534 | T4062 | T4059 | appos | 1629insT,mutation |
R2535 | T4063 | T4062 | punct | (,1629insT |
R2536 | T4064 | T4062 | appos | X423L,1629insT |
R2537 | T4065 | T4059 | punct | ),mutation |
R2538 | T4066 | T4061 | aux | has,reported |
R2539 | T4067 | T4061 | auxpass | been,reported |
R2540 | T4068 | T4061 | prep | in,reported |
R2541 | T4069 | T4070 | amod | several,patients |
R2542 | T4070 | T4068 | pobj | patients,in |
R2543 | T4071 | T4070 | compound | aniridia,patients |
R2544 | T4072 | T4073 | punct | [,33 |
R2545 | T4073 | T4061 | parataxis | 33,reported |
R2546 | T4074 | T4073 | nummod | 11,33 |
R2547 | T4075 | T4073 | punct | ",",33 |
R2548 | T4076 | T4073 | nummod | 12,33 |
R2549 | T4077 | T4073 | punct | ",",33 |
R2550 | T4078 | T4073 | nummod | 27,33 |
R2551 | T4079 | T4073 | punct | ",",33 |
R2552 | T4080 | T4073 | punct | ],33 |
R2553 | T4081 | T4061 | punct | .,reported |
R2554 | T4083 | T4084 | nsubj | Insertion,changes |
R2555 | T4085 | T4083 | prep | of,Insertion |
R2556 | T4086 | T4087 | det | a,nucleotide |
R2557 | T4087 | T4085 | pobj | nucleotide,of |
R2558 | T4088 | T4087 | amod | single,nucleotide |
R2559 | T4089 | T4087 | compound | T,nucleotide |
R2560 | T4090 | T4083 | prep | at,Insertion |
R2561 | T4091 | T4090 | pobj | position,at |
R2562 | T4092 | T4091 | nummod | 1629,position |
R2563 | T4093 | T4094 | det | the,codon |
R2564 | T4094 | T4084 | dobj | codon,changes |
R2565 | T4095 | T4094 | compound | stop,codon |
R2566 | T4096 | T4094 | punct | (,codon |
R2567 | T4097 | T4094 | appos | TAA,codon |
R2568 | T4098 | T4094 | punct | ),codon |
R2569 | T4099 | T4084 | prep | to,changes |
R2570 | T4100 | T4101 | det | a,codon |
R2571 | T4101 | T4099 | pobj | codon,to |
R2572 | T4102 | T4101 | compound | leucine,codon |
R2573 | T4103 | T4101 | punct | (,codon |
R2574 | T4104 | T4101 | appos | TTA,codon |
R2575 | T4105 | T4101 | punct | ),codon |
R2576 | T4106 | T4084 | cc | and,changes |
R2577 | T4107 | T4084 | conj | generates,changes |
R2578 | T4108 | T4109 | det | a,protein |
R2579 | T4109 | T4107 | dobj | protein,generates |
R2580 | T4110 | T4111 | amod | full,length |
R2581 | T4111 | T4109 | compound | length,protein |
R2582 | T4112 | T4109 | compound | PAX6,protein |
R2583 | T4113 | T4109 | prep | with,protein |
R2584 | T4114 | T4115 | det | a,extension |
R2585 | T4115 | T4113 | pobj | extension,with |
R2586 | T4116 | T4117 | npadvmod | C,terminal |
R2587 | T4117 | T4115 | amod | terminal,extension |
R2588 | T4118 | T4117 | punct | -,terminal |
R2589 | T4119 | T4120 | dep | that,extends |
R2590 | T4120 | T4115 | relcl | extends,extension |
R2591 | T4121 | T4120 | prep | for,extends |
R2592 | T4122 | T4123 | det | a,acids |
R2593 | T4123 | T4121 | pobj | acids,for |
R2594 | T4124 | T4123 | amod | further,acids |
R2595 | T4125 | T4123 | nummod | 35,acids |
R2596 | T4126 | T4123 | compound | amino,acids |
R2597 | T4127 | T4120 | prep | into,extends |
R2598 | T4128 | T4129 | det | the,region |
R2599 | T4129 | T4127 | pobj | region,into |
R2600 | T4130 | T4129 | nummod | 3,region |
R2601 | T4131 | T4130 | punct | ',3 |
R2602 | T4132 | T4129 | amod | untranslated,region |
R2603 | T4133 | T4084 | punct | .,changes |
R2604 | T4135 | T4136 | compound | MRI,analysis |
R2605 | T4136 | T4137 | nsubj | analysis,revealed |
R2606 | T4138 | T4136 | prep | of,analysis |
R2607 | T4139 | T4140 | nummod | six,patients |
R2608 | T4140 | T4138 | pobj | patients,of |
R2609 | T4141 | T4140 | prep | with,patients |
R2610 | T4142 | T4143 | det | this,mutation |
R2611 | T4143 | T4141 | pobj | mutation,with |
R2612 | T4144 | T4145 | amod | variable,defects |
R2613 | T4145 | T4137 | dobj | defects,revealed |
R2614 | T4146 | T4145 | compound | brain,defects |
R2615 | T4147 | T4145 | prep | including,defects |
R2616 | T4148 | T4147 | pobj | absence,including |
R2617 | T4149 | T4148 | cc | or,absence |
R2618 | T4150 | T4148 | conj | hypoplasia,absence |
R2619 | T4151 | T4148 | prep | of,absence |
R2620 | T4152 | T4153 | det | the,commissure |
R2621 | T4153 | T4151 | pobj | commissure,of |
R2622 | T4154 | T4153 | amod | anterior,commissure |
R2623 | T4155 | T4153 | punct | ", ",commissure |
R2624 | T4156 | T4157 | amod | pineal,gland |
R2625 | T4157 | T4153 | conj | gland,commissure |
R2626 | T4158 | T4157 | cc | and,gland |
R2627 | T4159 | T4160 | amod | olfactory,bulbs |
R2628 | T4160 | T4157 | conj | bulbs,gland |
R2629 | T4161 | T4162 | punct | [,12 |
R2630 | T4162 | T4137 | parataxis | 12,revealed |
R2631 | T4163 | T4162 | punct | ],12 |
R2632 | T4164 | T4137 | punct | .,revealed |
R2633 | T4166 | T4167 | nummod | Two,patients |
R2634 | T4167 | T4168 | nsubj | patients,had |
R2635 | T4168 | T4169 | ccomp | had,one |
R2636 | T4170 | T4171 | amod | temporal,polymicrogyria |
R2637 | T4171 | T4168 | dobj | polymicrogyria,had |
R2638 | T4172 | T4169 | punct | ", ",one |
R2639 | T4173 | T4169 | prep | in,one |
R2640 | T4174 | T4173 | pobj | association,in |
R2641 | T4175 | T4174 | prep | with,association |
R2642 | T4176 | T4175 | pobj | epilepsy,with |
R2643 | T4177 | T4178 | punct | [,12 |
R2644 | T4178 | T4169 | parataxis | 12,one |
R2645 | T4179 | T4178 | punct | ],12 |
R2646 | T4180 | T4169 | punct | .,one |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3360 | 505-520 | UBERON:0002264 | denotes | olfactory bulbs |
T3359 | 505-514 | GO:0007608 | denotes | olfactory |
T3358 | 488-500 | UBERON:0001905 | denotes | pineal gland |
T3357 | 467-486 | UBERON:0000935 | denotes | anterior commissure |
T3356 | 414-419 | UBERON:0000955 | denotes | brain |
T3355 | 387-395 | SO_EXT:sequence_alteration_entity_or_process | denotes | mutation |
T3354 | 329-339 | GO:0006412 | denotes | translated |
T3353 | 324-346 | SO_EXT:0000205 | denotes | 3' untranslated region |
T3352 | 303-314 | CHEBI_SO_EXT:amino_acid | denotes | amino acids |
T3351 | 252-262 | CHEBI_SO_EXT:C_terminus_or_C_terminal_region | denotes | C-terminal |
T3350 | 237-244 | CHEBI_PR_EXT:protein | denotes | protein |
T3349 | 232-236 | PR_EXT:000012318 | denotes | PAX6 |
T3348 | 192-197 | SO_EXT:0000360 | denotes | codon |
T3347 | 184-191 | CHEBI_SO_EXT:leucine | denotes | leucine |
T3346 | 162-172 | SO_EXT:0000319 | denotes | stop codon |
T3345 | 150-157 | SO_EXT:sequence_alteration_process | denotes | changes |
T3344 | 122-132 | CHEBI_SO_EXT:nucleotide | denotes | nucleotide |
T3343 | 120-132 | CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group | denotes | T nucleotide |
T3342 | 98-107 | SO_EXT:sequence_insertion_entity_or_process | denotes | Insertion |
T3341 | 10-18 | SO_EXT:sequence_alteration_entity_or_process | denotes | mutation |
craft-ca-core-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3211 | 505-520 | UBERON:0002264 | denotes | olfactory bulbs |
T3210 | 505-514 | GO:0007608 | denotes | olfactory |
T3209 | 488-500 | UBERON:0001905 | denotes | pineal gland |
T3208 | 467-486 | UBERON:0000935 | denotes | anterior commissure |
T3207 | 414-419 | UBERON:0000955 | denotes | brain |
T3206 | 329-339 | GO:0006412 | denotes | translated |
T3205 | 324-346 | SO:0000205 | denotes | 3' untranslated region |
T3204 | 232-236 | PR:000012318 | denotes | PAX6 |
T3203 | 192-197 | SO:0000360 | denotes | codon |
T3202 | 162-172 | SO:0000319 | denotes | stop codon |