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PMC:1208879 / 16344-16951 JSONTXT

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Id Subject Object Predicate Lexical cue
T4067 40-44 VBN denotes been
T4066 36-39 VBZ denotes has
T4065 34-35 -RRB- denotes )
T4064 29-34 NN denotes X423L
T4063 28-29 -LRB- denotes (
T4062 19-27 NN denotes 1629insT
T4061 45-53 VBN denotes reported
T4060 4-9 JJ denotes third
T4059 10-18 NN denotes mutation
T4058 0-3 DT denotes The
T4180 606-607 . denotes .
T4179 605-606 -RRB- denotes ]
T4178 603-605 CD denotes 12
T4177 602-603 -LRB- denotes [
T4176 593-601 NN denotes epilepsy
T4175 588-592 IN denotes with
T4174 576-587 NN denotes association
T4173 573-575 IN denotes in
T4172 567-569 , denotes ,
T4171 553-567 NN denotes polymicrogyria
T4170 544-552 JJ denotes temporal
T4169 569-572 CD denotes one
T4168 540-543 VBD denotes had
T4167 531-539 NNS denotes patients
T4166 527-530 CD denotes Two
T4165 526-607 sentence denotes Two patients had temporal polymicrogyria, one in association with epilepsy [12].
T4164 525-526 . denotes .
T4163 524-525 -RRB- denotes ]
T4162 522-524 CD denotes 12
T4161 521-522 -LRB- denotes [
T4160 515-520 NNS denotes bulbs
T4159 505-514 JJ denotes olfactory
T4158 501-504 CC denotes and
T4157 495-500 NN denotes gland
T4156 488-494 JJ denotes pineal
T4155 486-488 , denotes ,
T4154 467-475 JJ denotes anterior
T4153 476-486 NN denotes commissure
T4152 463-466 DT denotes the
T4151 460-462 IN denotes of
T4150 449-459 NN denotes hypoplasia
T4149 446-448 CC denotes or
T4148 438-445 NN denotes absence
T4147 428-437 VBG denotes including
T4146 414-419 NN denotes brain
T4145 420-427 NNS denotes defects
T4144 405-413 JJ denotes variable
T4143 387-395 NN denotes mutation
T4142 382-386 DT denotes this
T4141 377-381 IN denotes with
T4140 368-376 NNS denotes patients
T4139 364-367 CD denotes six
T4138 361-363 IN denotes of
T4137 396-404 VBD denotes revealed
T4136 352-360 NN denotes analysis
T4135 348-351 NN denotes MRI
T4134 347-526 sentence denotes MRI analysis of six patients with this mutation revealed variable brain defects including absence or hypoplasia of the anterior commissure, pineal gland and olfactory bulbs [12].
T4133 346-347 . denotes .
T4132 327-339 JJ denotes untranslated
T4131 325-326 SYM denotes '
T4130 324-325 CD denotes 3
T4129 340-346 NN denotes region
T4128 320-323 DT denotes the
T4127 315-319 IN denotes into
T4126 303-308 NN denotes amino
T4125 300-302 CD denotes 35
T4124 292-299 JJ denotes further
T4123 309-314 NNS denotes acids
T4122 290-291 DT denotes a
T4121 286-289 IN denotes for
T4120 278-285 VBZ denotes extends
T4119 273-277 WDT denotes that
T4118 253-254 HYPH denotes -
T4117 254-262 JJ denotes terminal
T4116 252-253 NN denotes C
T4115 263-272 NN denotes extension
T4114 250-251 DT denotes a
T4113 245-249 IN denotes with
T4112 232-236 NN denotes PAX6
T4111 225-231 NN denotes length
T4110 220-224 JJ denotes full
T4109 237-244 NN denotes protein
T4108 218-219 DT denotes a
T4107 208-217 VBZ denotes generates
T4106 204-207 CC denotes and
T4105 202-203 -RRB- denotes )
T4104 199-202 NN denotes TTA
T4103 198-199 -LRB- denotes (
T4102 184-191 NN denotes leucine
T4101 192-197 NN denotes codon
T4100 182-183 DT denotes a
T4099 179-181 IN denotes to
T4098 177-178 -RRB- denotes )
T4097 174-177 NN denotes TAA
T4096 173-174 -LRB- denotes (
T4095 162-166 NN denotes stop
T4094 167-172 NN denotes codon
T4093 158-161 DT denotes the
T4092 145-149 CD denotes 1629
T4091 136-144 NN denotes position
T4090 133-135 IN denotes at
T4089 120-121 NN denotes T
T4088 113-119 JJ denotes single
T4087 122-132 NN denotes nucleotide
T4086 111-112 DT denotes a
T4085 108-110 IN denotes of
T4084 150-157 VBZ denotes changes
T4083 98-107 NN denotes Insertion
T4082 97-347 sentence denotes Insertion of a single T nucleotide at position 1629 changes the stop codon (TAA) to a leucine codon (TTA) and generates a full length PAX6 protein with a C-terminal extension that extends for a further 35 amino acids into the 3' untranslated region.
T4081 96-97 . denotes .
T4080 95-96 -RRB- denotes ]
T4079 92-93 , denotes ,
T4078 90-92 CD denotes 27
T4077 89-90 , denotes ,
T4076 87-89 CD denotes 12
T4075 86-87 , denotes ,
T4074 84-86 CD denotes 11
T4073 93-95 CD denotes 33
T4072 83-84 -LRB- denotes [
T4071 65-73 NN denotes aniridia
T4070 74-82 NNS denotes patients
T4069 57-64 JJ denotes several
T4068 54-56 IN denotes in
R2531 T4058 T4059 det The,mutation
R2532 T4059 T4061 nsubjpass mutation,reported
R2533 T4060 T4059 amod third,mutation
R2534 T4062 T4059 appos 1629insT,mutation
R2535 T4063 T4062 punct (,1629insT
R2536 T4064 T4062 appos X423L,1629insT
R2537 T4065 T4059 punct ),mutation
R2538 T4066 T4061 aux has,reported
R2539 T4067 T4061 auxpass been,reported
R2540 T4068 T4061 prep in,reported
R2541 T4069 T4070 amod several,patients
R2542 T4070 T4068 pobj patients,in
R2543 T4071 T4070 compound aniridia,patients
R2544 T4072 T4073 punct [,33
R2545 T4073 T4061 parataxis 33,reported
R2546 T4074 T4073 nummod 11,33
R2547 T4075 T4073 punct ",",33
R2548 T4076 T4073 nummod 12,33
R2549 T4077 T4073 punct ",",33
R2550 T4078 T4073 nummod 27,33
R2551 T4079 T4073 punct ",",33
R2552 T4080 T4073 punct ],33
R2553 T4081 T4061 punct .,reported
R2554 T4083 T4084 nsubj Insertion,changes
R2555 T4085 T4083 prep of,Insertion
R2556 T4086 T4087 det a,nucleotide
R2557 T4087 T4085 pobj nucleotide,of
R2558 T4088 T4087 amod single,nucleotide
R2559 T4089 T4087 compound T,nucleotide
R2560 T4090 T4083 prep at,Insertion
R2561 T4091 T4090 pobj position,at
R2562 T4092 T4091 nummod 1629,position
R2563 T4093 T4094 det the,codon
R2564 T4094 T4084 dobj codon,changes
R2565 T4095 T4094 compound stop,codon
R2566 T4096 T4094 punct (,codon
R2567 T4097 T4094 appos TAA,codon
R2568 T4098 T4094 punct ),codon
R2569 T4099 T4084 prep to,changes
R2570 T4100 T4101 det a,codon
R2571 T4101 T4099 pobj codon,to
R2572 T4102 T4101 compound leucine,codon
R2573 T4103 T4101 punct (,codon
R2574 T4104 T4101 appos TTA,codon
R2575 T4105 T4101 punct ),codon
R2576 T4106 T4084 cc and,changes
R2577 T4107 T4084 conj generates,changes
R2578 T4108 T4109 det a,protein
R2579 T4109 T4107 dobj protein,generates
R2580 T4110 T4111 amod full,length
R2581 T4111 T4109 compound length,protein
R2582 T4112 T4109 compound PAX6,protein
R2583 T4113 T4109 prep with,protein
R2584 T4114 T4115 det a,extension
R2585 T4115 T4113 pobj extension,with
R2586 T4116 T4117 npadvmod C,terminal
R2587 T4117 T4115 amod terminal,extension
R2588 T4118 T4117 punct -,terminal
R2589 T4119 T4120 dep that,extends
R2590 T4120 T4115 relcl extends,extension
R2591 T4121 T4120 prep for,extends
R2592 T4122 T4123 det a,acids
R2593 T4123 T4121 pobj acids,for
R2594 T4124 T4123 amod further,acids
R2595 T4125 T4123 nummod 35,acids
R2596 T4126 T4123 compound amino,acids
R2597 T4127 T4120 prep into,extends
R2598 T4128 T4129 det the,region
R2599 T4129 T4127 pobj region,into
R2600 T4130 T4129 nummod 3,region
R2601 T4131 T4130 punct ',3
R2602 T4132 T4129 amod untranslated,region
R2603 T4133 T4084 punct .,changes
R2604 T4135 T4136 compound MRI,analysis
R2605 T4136 T4137 nsubj analysis,revealed
R2606 T4138 T4136 prep of,analysis
R2607 T4139 T4140 nummod six,patients
R2608 T4140 T4138 pobj patients,of
R2609 T4141 T4140 prep with,patients
R2610 T4142 T4143 det this,mutation
R2611 T4143 T4141 pobj mutation,with
R2612 T4144 T4145 amod variable,defects
R2613 T4145 T4137 dobj defects,revealed
R2614 T4146 T4145 compound brain,defects
R2615 T4147 T4145 prep including,defects
R2616 T4148 T4147 pobj absence,including
R2617 T4149 T4148 cc or,absence
R2618 T4150 T4148 conj hypoplasia,absence
R2619 T4151 T4148 prep of,absence
R2620 T4152 T4153 det the,commissure
R2621 T4153 T4151 pobj commissure,of
R2622 T4154 T4153 amod anterior,commissure
R2623 T4155 T4153 punct ", ",commissure
R2624 T4156 T4157 amod pineal,gland
R2625 T4157 T4153 conj gland,commissure
R2626 T4158 T4157 cc and,gland
R2627 T4159 T4160 amod olfactory,bulbs
R2628 T4160 T4157 conj bulbs,gland
R2629 T4161 T4162 punct [,12
R2630 T4162 T4137 parataxis 12,revealed
R2631 T4163 T4162 punct ],12
R2632 T4164 T4137 punct .,revealed
R2633 T4166 T4167 nummod Two,patients
R2634 T4167 T4168 nsubj patients,had
R2635 T4168 T4169 ccomp had,one
R2636 T4170 T4171 amod temporal,polymicrogyria
R2637 T4171 T4168 dobj polymicrogyria,had
R2638 T4172 T4169 punct ", ",one
R2639 T4173 T4169 prep in,one
R2640 T4174 T4173 pobj association,in
R2641 T4175 T4174 prep with,association
R2642 T4176 T4175 pobj epilepsy,with
R2643 T4177 T4178 punct [,12
R2644 T4178 T4169 parataxis 12,one
R2645 T4179 T4178 punct ],12
R2646 T4180 T4169 punct .,one

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3360 505-520 UBERON:0002264 denotes olfactory bulbs
T3359 505-514 GO:0007608 denotes olfactory
T3358 488-500 UBERON:0001905 denotes pineal gland
T3357 467-486 UBERON:0000935 denotes anterior commissure
T3356 414-419 UBERON:0000955 denotes brain
T3355 387-395 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T3354 329-339 GO:0006412 denotes translated
T3353 324-346 SO_EXT:0000205 denotes 3' untranslated region
T3352 303-314 CHEBI_SO_EXT:amino_acid denotes amino acids
T3351 252-262 CHEBI_SO_EXT:C_terminus_or_C_terminal_region denotes C-terminal
T3350 237-244 CHEBI_PR_EXT:protein denotes protein
T3349 232-236 PR_EXT:000012318 denotes PAX6
T3348 192-197 SO_EXT:0000360 denotes codon
T3347 184-191 CHEBI_SO_EXT:leucine denotes leucine
T3346 162-172 SO_EXT:0000319 denotes stop codon
T3345 150-157 SO_EXT:sequence_alteration_process denotes changes
T3344 122-132 CHEBI_SO_EXT:nucleotide denotes nucleotide
T3343 120-132 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T nucleotide
T3342 98-107 SO_EXT:sequence_insertion_entity_or_process denotes Insertion
T3341 10-18 SO_EXT:sequence_alteration_entity_or_process denotes mutation

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3211 505-520 UBERON:0002264 denotes olfactory bulbs
T3210 505-514 GO:0007608 denotes olfactory
T3209 488-500 UBERON:0001905 denotes pineal gland
T3208 467-486 UBERON:0000935 denotes anterior commissure
T3207 414-419 UBERON:0000955 denotes brain
T3206 329-339 GO:0006412 denotes translated
T3205 324-346 SO:0000205 denotes 3' untranslated region
T3204 232-236 PR:000012318 denotes PAX6
T3203 192-197 SO:0000360 denotes codon
T3202 162-172 SO:0000319 denotes stop codon