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PMC:1208879 / 10641-11111 JSONTXT

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Id Subject Object Predicate Lexical cue
T8468 0-17 JJ denotes Semi-quantitative
T8469 22-30 NN denotes analysis
T8470 18-21 NN denotes PCR
T8471 31-33 IN denotes of
T8472 34-40 NN denotes Homer3
T8473 40-42 , denotes ,
T8474 42-47 NN denotes Dncl1
T8475 47-49 , denotes ,
T8476 49-55 NN denotes Trim11
T8477 56-59 CC denotes and
T8478 60-64 NN denotes Pax6
T8479 65-67 IN denotes in
T8480 68-71 DT denotes the
T8481 89-96 NN denotes library
T8482 72-77 NN denotes mouse
T8483 78-83 NN denotes brain
T8484 84-88 NN denotes cDNA
T8485 96-97 . denotes .
T8486 97-251 sentence denotes Library cDNA was amplified with primers specific for Pax6 (600 bp), Homer3 (485 bp band), Dncl1 (485 bp) and Trim11 (609 bp) for 20, 25, 30 or 35 cycles.
T8487 98-105 NN denotes Library
T8488 106-110 NN denotes cDNA
T8489 115-124 VBN denotes amplified
T8490 111-114 VBD denotes was
T8491 125-129 IN denotes with
T8492 130-137 NNS denotes primers
T8493 138-146 JJ denotes specific
T8494 147-150 IN denotes for
T8495 151-155 NN denotes Pax6
T8496 156-157 -LRB- denotes (
T8497 161-163 NN denotes bp
T8498 157-160 CD denotes 600
T8499 163-164 -RRB- denotes )
T8500 164-166 , denotes ,
T8501 166-172 NN denotes Homer3
T8502 173-174 -LRB- denotes (
T8503 181-185 NN denotes band
T8504 174-177 CD denotes 485
T8505 178-180 NN denotes bp
T8506 185-186 -RRB- denotes )
T8507 186-188 , denotes ,
T8508 188-193 NN denotes Dncl1
T8509 194-195 -LRB- denotes (
T8510 199-201 NN denotes bp
T8511 195-198 CD denotes 485
T8512 201-202 -RRB- denotes )
T8513 203-206 CC denotes and
T8514 207-213 NN denotes Trim11
T8515 214-215 -LRB- denotes (
T8516 219-221 NN denotes bp
T8517 215-218 CD denotes 609
T8518 221-222 -RRB- denotes )
T8519 223-226 IN denotes for
T8520 227-229 CD denotes 20
T8521 244-250 NNS denotes cycles
T8522 229-231 , denotes ,
T8523 231-233 CD denotes 25
T8524 233-235 , denotes ,
T8525 235-237 CD denotes 30
T8526 238-240 CC denotes or
T8527 241-243 CD denotes 35
T8528 250-251 . denotes .
T8529 251-357 sentence denotes Atp5a1 (415 bp) and Gapdh (450 bp), which are highly expressed in the brain, are included for comparison.
T8530 252-258 NN denotes Atp5a1
T8531 333-341 VBN denotes included
T8532 259-260 -LRB- denotes (
T8533 264-266 NN denotes bp
T8534 260-263 CD denotes 415
T8535 266-267 -RRB- denotes )
T8536 268-271 CC denotes and
T8537 272-277 NN denotes Gapdh
T8538 278-279 -LRB- denotes (
T8539 283-285 NN denotes bp
T8540 279-282 CD denotes 450
T8541 285-286 -RRB- denotes )
T8542 286-288 , denotes ,
T8543 288-293 WDT denotes which
T8544 305-314 VBN denotes expressed
T8545 294-297 VBP denotes are
T8546 298-304 RB denotes highly
T8547 315-317 IN denotes in
T8548 318-321 DT denotes the
T8549 322-327 NN denotes brain
T8550 327-329 , denotes ,
T8551 329-332 VBP denotes are
T8552 342-345 IN denotes for
T8553 346-356 NN denotes comparison
T8554 356-357 . denotes .
T8555 357-470 sentence denotes M indicates the Φ×174 HaeIII DNA size marker; the positions of the 603 bp and 310 bp marker bands are indicated.
T8556 358-359 NN denotes M
T8557 360-369 VBZ denotes indicates
T8558 460-469 VBN denotes indicated
T8559 370-373 DT denotes the
T8560 396-402 NN denotes marker
T8561 374-376 NN denotes Φ×
T8562 380-386 NN denotes HaeIII
T8563 376-379 CD denotes 174
T8564 387-390 NN denotes DNA
T8565 391-395 NN denotes size
T8566 402-403 : denotes ;
T8567 404-407 DT denotes the
T8568 408-417 NNS denotes positions
T8569 418-420 IN denotes of
T8570 421-424 DT denotes the
T8571 450-455 NNS denotes bands
T8572 425-428 CD denotes 603
T8573 429-431 NN denotes bp
T8574 432-435 CC denotes and
T8575 436-439 CD denotes 310
T8576 440-442 NN denotes bp
T8577 443-449 NN denotes marker
T8578 456-459 VBP denotes are
T8579 469-470 . denotes .
R5394 T8468 T8469 amod Semi-quantitative,analysis
R5395 T8470 T8469 compound PCR,analysis
R5396 T8471 T8469 prep of,analysis
R5397 T8472 T8471 pobj Homer3,of
R5398 T8473 T8472 punct ", ",Homer3
R5399 T8474 T8472 conj Dncl1,Homer3
R5400 T8475 T8474 punct ", ",Dncl1
R5401 T8476 T8474 conj Trim11,Dncl1
R5402 T8477 T8476 cc and,Trim11
R5403 T8478 T8476 conj Pax6,Trim11
R5404 T8479 T8469 prep in,analysis
R5405 T8480 T8481 det the,library
R5406 T8481 T8479 pobj library,in
R5407 T8482 T8483 compound mouse,brain
R5408 T8483 T8481 compound brain,library
R5409 T8484 T8481 compound cDNA,library
R5410 T8485 T8469 punct .,analysis
R5411 T8487 T8488 compound Library,cDNA
R5412 T8488 T8489 nsubjpass cDNA,amplified
R5413 T8490 T8489 auxpass was,amplified
R5414 T8491 T8489 prep with,amplified
R5415 T8492 T8491 pobj primers,with
R5416 T8493 T8492 amod specific,primers
R5417 T8494 T8493 prep for,specific
R5418 T8495 T8494 pobj Pax6,for
R5419 T8496 T8497 punct (,bp
R5420 T8497 T8495 parataxis bp,Pax6
R5421 T8498 T8497 nummod 600,bp
R5422 T8499 T8497 punct ),bp
R5423 T8500 T8495 punct ", ",Pax6
R5424 T8501 T8495 conj Homer3,Pax6
R5425 T8502 T8503 punct (,band
R5426 T8503 T8501 parataxis band,Homer3
R5427 T8504 T8505 nummod 485,bp
R5428 T8505 T8503 compound bp,band
R5429 T8506 T8503 punct ),band
R5430 T8507 T8501 punct ", ",Homer3
R5431 T8508 T8501 conj Dncl1,Homer3
R5432 T8509 T8510 punct (,bp
R5433 T8510 T8508 parataxis bp,Dncl1
R5434 T8511 T8510 nummod 485,bp
R5435 T8512 T8510 punct ),bp
R5436 T8513 T8508 cc and,Dncl1
R5437 T8514 T8508 conj Trim11,Dncl1
R5438 T8515 T8516 punct (,bp
R5439 T8516 T8514 parataxis bp,Trim11
R5440 T8517 T8516 nummod 609,bp
R5441 T8518 T8516 punct ),bp
R5442 T8519 T8489 prep for,amplified
R5443 T8520 T8521 nummod 20,cycles
R5444 T8521 T8519 pobj cycles,for
R5445 T8522 T8520 punct ", ",20
R5446 T8523 T8520 conj 25,20
R5447 T8524 T8523 punct ", ",25
R5448 T8525 T8523 conj 30,25
R5449 T8526 T8525 cc or,30
R5450 T8527 T8525 conj 35,30
R5451 T8528 T8489 punct .,amplified
R5452 T8530 T8531 nsubjpass Atp5a1,included
R5453 T8532 T8533 punct (,bp
R5454 T8533 T8530 parataxis bp,Atp5a1
R5455 T8534 T8533 nummod 415,bp
R5456 T8535 T8533 punct ),bp
R5457 T8536 T8530 cc and,Atp5a1
R5458 T8537 T8530 conj Gapdh,Atp5a1
R5459 T8538 T8539 punct (,bp
R5460 T8539 T8537 parataxis bp,Gapdh
R5461 T8540 T8539 nummod 450,bp
R5462 T8541 T8539 punct ),bp
R5463 T8542 T8530 punct ", ",Atp5a1
R5464 T8543 T8544 dep which,expressed
R5465 T8544 T8530 relcl expressed,Atp5a1
R5466 T8545 T8544 auxpass are,expressed
R5467 T8546 T8544 advmod highly,expressed
R5468 T8547 T8544 prep in,expressed
R5469 T8548 T8549 det the,brain
R5470 T8549 T8547 pobj brain,in
R5471 T8550 T8531 punct ", ",included
R5472 T8551 T8531 auxpass are,included
R5473 T8552 T8531 prep for,included
R5474 T8553 T8552 pobj comparison,for
R5475 T8554 T8531 punct .,included
R5476 T8556 T8557 nsubj M,indicates
R5477 T8557 T8558 ccomp indicates,indicated
R5478 T8559 T8560 det the,marker
R5479 T8560 T8557 dobj marker,indicates
R5480 T8561 T8562 nmod Φ×,HaeIII
R5481 T8562 T8560 compound HaeIII,marker
R5482 T8563 T8562 nummod 174,HaeIII
R5483 T8564 T8565 compound DNA,size
R5484 T8565 T8560 compound size,marker
R5485 T8566 T8558 punct ;,indicated
R5486 T8567 T8568 det the,positions
R5487 T8568 T8558 nsubjpass positions,indicated
R5488 T8569 T8568 prep of,positions
R5489 T8570 T8571 det the,bands
R5490 T8571 T8569 pobj bands,of
R5491 T8572 T8573 nummod 603,bp
R5492 T8573 T8571 nmod bp,bands
R5493 T8574 T8573 cc and,bp
R5494 T8575 T8576 nummod 310,bp
R5495 T8576 T8573 conj bp,bp
R5496 T8577 T8571 compound marker,bands
R5497 T8578 T8558 auxpass are,indicated
R5498 T8579 T8558 punct .,indicated

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8439 34-40 PR_EXT:000008680 denotes Homer3
T8440 42-47 PR_EXT:000002325 denotes Dncl1
T8441 49-55 PR_EXT:000016642 denotes Trim11
T8442 60-64 PR_EXT:000012318 denotes Pax6
T8443 72-77 NCBITaxon:10088 denotes mouse
T8444 78-83 UBERON:0000955 denotes brain
T8445 84-88 SO_EXT:cDNA denotes cDNA
T8446 106-110 SO_EXT:cDNA denotes cDNA
T8447 130-137 SO_EXT:0000112 denotes primers
T8448 151-155 PR_EXT:000012318 denotes Pax6
T8449 161-163 SO_EXT:0000028 denotes bp
T8450 166-172 PR_EXT:000008680 denotes Homer3
T8451 178-180 SO_EXT:0000028 denotes bp
T8452 188-193 PR_EXT:000002325 denotes Dncl1
T8453 199-201 SO_EXT:0000028 denotes bp
T8454 207-213 PR_EXT:000016642 denotes Trim11
T8455 219-221 SO_EXT:0000028 denotes bp
T8456 252-258 PR_EXT:000004453 denotes Atp5a1
T8457 264-266 SO_EXT:0000028 denotes bp
T8458 272-277 GO_PR_EXT:glyceraldehyde_3_phosphate_dehydrogenase denotes Gapdh
T8459 283-285 SO_EXT:0000028 denotes bp
T8460 305-314 GO:0010467 denotes expressed
T8461 322-327 UBERON:0000955 denotes brain
T8462 374-379 NCBITaxon:1910954 denotes Φ×174
T8463 387-390 CHEBI_SO_EXT:DNA denotes DNA
T8464 396-402 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T8465 429-431 SO_EXT:0000028 denotes bp
T8466 440-442 SO_EXT:0000028 denotes bp
T8467 443-449 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8416 34-40 PR:000008680 denotes Homer3
T8417 42-47 PR:000002325 denotes Dncl1
T8418 49-55 PR:000016642 denotes Trim11
T8419 60-64 PR:000012318 denotes Pax6
T8420 72-77 NCBITaxon:10088 denotes mouse
T8421 78-83 UBERON:0000955 denotes brain
T8422 130-137 SO:0000112 denotes primers
T8423 151-155 PR:000012318 denotes Pax6
T8424 161-163 SO:0000028 denotes bp
T8425 166-172 PR:000008680 denotes Homer3
T8426 178-180 SO:0000028 denotes bp
T8427 188-193 PR:000002325 denotes Dncl1
T8428 199-201 SO:0000028 denotes bp
T8429 207-213 PR:000016642 denotes Trim11
T8430 219-221 SO:0000028 denotes bp
T8431 252-258 PR:000004453 denotes Atp5a1
T8432 264-266 SO:0000028 denotes bp
T8433 283-285 SO:0000028 denotes bp
T8434 305-314 GO:0010467 denotes expressed
T8435 322-327 UBERON:0000955 denotes brain
T8436 374-379 NCBITaxon:1910954 denotes Φ×174
T8437 429-431 SO:0000028 denotes bp
T8438 440-442 SO:0000028 denotes bp