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PMC:1208873 / 9785-11431 JSONTXT

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Id Subject Object Predicate Lexical cue
T2712 0-3 DT denotes The
T2713 4-8 NN denotes lack
T2714 128-135 VBP denotes suggest
T2715 9-11 IN denotes of
T2716 12-13 DT denotes a
T2717 28-32 NN denotes node
T2718 14-27 JJ denotes morphological
T2719 33-36 CC denotes and
T2720 37-45 NN denotes presence
T2721 46-48 IN denotes of
T2722 49-50 DT denotes a
T2723 61-67 NN denotes streak
T2724 51-60 JJ denotes shortened
T2725 67-69 , denotes ,
T2726 69-77 RB denotes together
T2727 78-82 IN denotes with
T2728 83-90 VBN denotes reduced
T2729 91-104 NN denotes neuroectoderm
T2730 105-108 CC denotes and
T2731 109-113 NN denotes lack
T2732 114-116 IN denotes of
T2733 117-126 NNS denotes headfolds
T2734 126-128 , denotes ,
T2735 136-140 IN denotes that
T2736 174-182 VBN denotes impaired
T2737 141-149 JJ denotes anterior
T2738 150-156 NN denotes streak
T2739 157-166 NN denotes formation
T2740 167-170 MD denotes may
T2741 171-173 VB denotes be
T2742 183-185 IN denotes in
T2743 186-196 NN denotes huntingtin
T2744 197-206 JJ denotes deficient
T2745 207-214 NNS denotes embryos
T2746 214-215 . denotes .
T2747 215-298 sentence denotes To investigate this possibility, we examined mesoderm formation in mutant embryos.
T2748 216-218 TO denotes To
T2749 219-230 VB denotes investigate
T2750 252-260 VBD denotes examined
T2751 231-235 DT denotes this
T2752 236-247 NN denotes possibility
T2753 247-249 , denotes ,
T2754 249-251 PRP denotes we
T2755 261-269 NN denotes mesoderm
T2756 270-279 NN denotes formation
T2757 280-282 IN denotes in
T2758 283-289 NN denotes mutant
T2759 290-297 NNS denotes embryos
T2760 297-298 . denotes .
T2761 298-410 sentence denotes Mesoderm is specified in the mutant embryos, as marked by the expression of T (Brachyury) and Evx1 (Fig. 2A–F).
T2762 299-307 NN denotes Mesoderm
T2763 311-320 VBN denotes specified
T2764 308-310 VBZ denotes is
T2765 321-323 IN denotes in
T2766 324-327 DT denotes the
T2767 335-342 NNS denotes embryos
T2768 328-334 NN denotes mutant
T2769 342-344 , denotes ,
T2770 344-346 IN denotes as
T2771 347-353 VBN denotes marked
T2772 354-356 IN denotes by
T2773 357-360 DT denotes the
T2774 361-371 NN denotes expression
T2775 372-374 IN denotes of
T2776 375-376 NN denotes T
T2777 377-378 -LRB- denotes (
T2778 378-387 NN denotes Brachyury
T2779 387-388 -RRB- denotes )
T2780 389-392 CC denotes and
T2781 393-397 NN denotes Evx1
T2782 398-399 -LRB- denotes (
T2783 399-403 NN denotes Fig.
T2784 404-406 CD denotes 2A
T2785 406-407 SYM denotes –
T2786 407-408 NN denotes F
T2787 408-409 -RRB- denotes )
T2788 409-410 . denotes .
T2789 410-516 sentence denotes However, close inspection of the data reveals abnormal patterning within this tissue and its derivatives.
T2790 411-418 RB denotes However
T2791 449-456 VBZ denotes reveals
T2792 418-420 , denotes ,
T2793 420-425 JJ denotes close
T2794 426-436 NN denotes inspection
T2795 437-439 IN denotes of
T2796 440-443 DT denotes the
T2797 444-448 NNS denotes data
T2798 457-465 JJ denotes abnormal
T2799 466-476 NN denotes patterning
T2800 477-483 IN denotes within
T2801 484-488 DT denotes this
T2802 489-495 NN denotes tissue
T2803 496-499 CC denotes and
T2804 500-503 PRP$ denotes its
T2805 504-515 NNS denotes derivatives
T2806 515-516 . denotes .
T2807 516-517 NN denotes T
T2808 619-627 VBN denotes detected
T2809 516-772 sentence denotes T, normally expressed in the primitive streak, node and axial head process/notochord mesoderm [22], is detected in the shortened streak and axial mesoderm in Hdhex4/5/Hdhex4/5 embryos, extending rostrally from a region of weakly positive cells (Fig. 2A,B).
T2810 517-519 , denotes ,
T2811 519-527 RB denotes normally
T2812 528-537 VBN denotes expressed
T2813 538-540 IN denotes in
T2814 541-544 DT denotes the
T2815 555-561 NN denotes streak
T2816 545-554 JJ denotes primitive
T2817 561-563 , denotes ,
T2818 563-567 NN denotes node
T2819 568-571 CC denotes and
T2820 572-577 JJ denotes axial
T2821 583-590 NN denotes process
T2822 578-582 NN denotes head
T2823 590-591 HYPH denotes /
T2824 591-600 NN denotes notochord
T2825 601-609 NN denotes mesoderm
T2826 610-611 -LRB- denotes [
T2827 611-613 CD denotes 22
T2828 613-614 -RRB- denotes ]
T2829 614-616 , denotes ,
T2830 616-618 VBZ denotes is
T2831 628-630 IN denotes in
T2832 631-634 DT denotes the
T2833 645-651 NN denotes streak
T2834 635-644 VBN denotes shortened
T2835 652-655 CC denotes and
T2836 656-661 JJ denotes axial
T2837 662-670 NN denotes mesoderm
T2838 671-673 IN denotes in
T2839 674-680 NN denotes Hdhex4
T2840 692-699 NNS denotes embryos
T2841 680-681 HYPH denotes /
T2842 681-682 CD denotes 5
T2843 682-683 HYPH denotes /
T2844 683-689 NN denotes Hdhex4
T2845 689-690 HYPH denotes /
T2846 690-691 CD denotes 5
T2847 699-701 , denotes ,
T2848 701-710 VBG denotes extending
T2849 711-720 RB denotes rostrally
T2850 721-725 IN denotes from
T2851 726-727 DT denotes a
T2852 728-734 NN denotes region
T2853 735-737 IN denotes of
T2854 738-744 RB denotes weakly
T2855 745-753 JJ denotes positive
T2856 754-759 NNS denotes cells
T2857 760-761 -LRB- denotes (
T2858 769-770 NN denotes B
T2859 761-765 NNP denotes Fig.
T2860 766-768 CD denotes 2A
T2861 768-769 , denotes ,
T2862 770-771 -RRB- denotes )
T2863 771-772 . denotes .
T2864 772-906 sentence denotes T expression appears weaker, however, in the anterior streak, corresponding to cells that will give rise to axial mesoderm (Fig. 2D).
T2865 773-774 NN denotes T
T2866 775-785 NN denotes expression
T2867 786-793 VBZ denotes appears
T2868 794-800 JJR denotes weaker
T2869 800-802 , denotes ,
T2870 802-809 RB denotes however
T2871 809-811 , denotes ,
T2872 811-813 IN denotes in
T2873 814-817 DT denotes the
T2874 827-833 NN denotes streak
T2875 818-826 JJ denotes anterior
T2876 833-835 , denotes ,
T2877 835-848 VBG denotes corresponding
T2878 849-851 IN denotes to
T2879 852-857 NNS denotes cells
T2880 858-862 WDT denotes that
T2881 868-872 VB denotes give
T2882 863-867 MD denotes will
T2883 873-877 NN denotes rise
T2884 878-880 IN denotes to
T2885 881-886 JJ denotes axial
T2886 887-895 NN denotes mesoderm
T2887 896-897 -LRB- denotes (
T2888 897-901 NN denotes Fig.
T2889 902-904 CD denotes 2D
T2890 904-905 -RRB- denotes )
T2891 905-906 . denotes .
T2892 906-1042 sentence denotes T is also ectopically expressed in mutant extraembryonic mesoderm at the anterior embryonic junction and along the chorion (Fig. 2B,D).
T2893 907-908 NN denotes T
T2894 929-938 VBN denotes expressed
T2895 909-911 VBZ denotes is
T2896 912-916 RB denotes also
T2897 917-928 RB denotes ectopically
T2898 939-941 IN denotes in
T2899 942-948 NN denotes mutant
T2900 964-972 NN denotes mesoderm
T2901 949-963 JJ denotes extraembryonic
T2902 973-975 IN denotes at
T2903 976-979 DT denotes the
T2904 999-1007 NN denotes junction
T2905 980-988 JJ denotes anterior
T2906 989-998 JJ denotes embryonic
T2907 1008-1011 CC denotes and
T2908 1012-1017 IN denotes along
T2909 1018-1021 DT denotes the
T2910 1022-1029 NN denotes chorion
T2911 1030-1031 -LRB- denotes (
T2912 1039-1040 NN denotes D
T2913 1031-1035 NN denotes Fig.
T2914 1036-1038 CD denotes 2B
T2915 1038-1039 , denotes ,
T2916 1040-1041 -RRB- denotes )
T2917 1041-1042 . denotes .
T2918 1042-1313 sentence denotes Similarly, Evx1, normally expressed in primitive streak mesoderm at E7.5 with highest levels in proximal cells [23], is expressed in the proximal shortened streak but is also aberrantly expressed throughout the extraembryonic mesoderm, allantois and chorion (Fig. 2E,F).
T2919 1043-1052 RB denotes Similarly
T2920 1163-1172 VBN denotes expressed
T2921 1052-1054 , denotes ,
T2922 1054-1058 NN denotes Evx1
T2923 1058-1060 , denotes ,
T2924 1060-1068 RB denotes normally
T2925 1069-1078 VBN denotes expressed
T2926 1079-1081 IN denotes in
T2927 1082-1091 JJ denotes primitive
T2928 1099-1107 NN denotes mesoderm
T2929 1092-1098 NN denotes streak
T2930 1108-1110 IN denotes at
T2931 1111-1115 NN denotes E7.5
T2932 1116-1120 IN denotes with
T2933 1129-1135 NNS denotes levels
T2934 1121-1128 JJS denotes highest
T2935 1136-1138 IN denotes in
T2936 1139-1147 JJ denotes proximal
T2937 1148-1153 NNS denotes cells
T2938 1154-1155 -LRB- denotes [
T2939 1155-1157 CD denotes 23
T2940 1157-1158 -RRB- denotes ]
T2941 1158-1160 , denotes ,
T2942 1160-1162 VBZ denotes is
T2943 1173-1175 IN denotes in
T2944 1176-1179 DT denotes the
T2945 1199-1205 NN denotes streak
T2946 1180-1188 JJ denotes proximal
T2947 1189-1198 VBN denotes shortened
T2948 1206-1209 CC denotes but
T2949 1210-1212 VBZ denotes is
T2950 1229-1238 VBN denotes expressed
T2951 1213-1217 RB denotes also
T2952 1218-1228 RB denotes aberrantly
T2953 1239-1249 IN denotes throughout
T2954 1250-1253 DT denotes the
T2955 1269-1277 NN denotes mesoderm
T2956 1254-1268 JJ denotes extraembryonic
T2957 1277-1279 , denotes ,
T2958 1279-1288 NN denotes allantois
T2959 1289-1292 CC denotes and
T2960 1293-1300 NN denotes chorion
T2961 1301-1302 -LRB- denotes (
T2962 1310-1311 NN denotes F
T2963 1302-1306 NN denotes Fig.
T3000 1451-1464 JJ denotes inappropriate
T3001 1476-1478 IN denotes of
T3002 1479-1480 NN denotes T
T3003 1481-1484 CC denotes and
T3004 1485-1489 NN denotes Evx1
T3005 1489-1491 , denotes ,
T3006 1491-1494 DT denotes the
T3007 1515-1521 NN denotes streak
T3008 1495-1504 VBN denotes shortened
T3009 1505-1514 JJ denotes primitive
T3010 1521-1523 , denotes ,
T3011 1523-1526 CC denotes and
T3012 1527-1530 DT denotes the
T3013 1531-1538 NN denotes absence
T3014 1539-1541 IN denotes of
T3015 1542-1543 DT denotes a
T3016 1558-1562 NN denotes node
T3017 1544-1557 JJ denotes morphological
T3018 1562-1564 , denotes ,
T3019 1564-1567 DT denotes all
T3020 1576-1580 IN denotes that
T3021 1611-1613 VBZ denotes is
T3022 1581-1584 DT denotes the
T3023 1604-1610 NN denotes streak
T3024 1585-1593 JJ denotes anterior
T3025 1594-1603 JJ denotes primitive
T3026 1614-1623 JJ denotes deficient
T3027 1624-1626 IN denotes in
T3028 1627-1630 DT denotes the
T3029 1638-1645 NNS denotes embryos
T3030 1631-1637 NN denotes mutant
T3031 1645-1646 . denotes .
T2997 1445-1447 , denotes ,
T2964 1307-1309 CD denotes 2E
T2965 1309-1310 , denotes ,
T2966 1311-1312 -RRB- denotes )
T2967 1312-1313 . denotes .
T2968 1313-1435 sentence denotes Extraembryonic mesoderm, derived from the proximal streak, does not normally express T or Evx1 in wild-type embryos [22].
T2969 1314-1328 JJ denotes Extraembryonic
T2970 1329-1337 NN denotes mesoderm
T2971 1391-1398 VB denotes express
T2972 1337-1339 , denotes ,
T2973 1339-1346 VBN denotes derived
T2974 1347-1351 IN denotes from
T2975 1352-1355 DT denotes the
T2976 1365-1371 NN denotes streak
T2977 1356-1364 JJ denotes proximal
T2978 1371-1373 , denotes ,
T2979 1373-1377 VBZ denotes does
T2980 1378-1381 RB denotes not
T2981 1382-1390 RB denotes normally
T2982 1399-1400 NN denotes T
T2983 1401-1403 CC denotes or
T2984 1404-1408 NN denotes Evx1
T2985 1409-1411 IN denotes in
T2986 1412-1416 JJ denotes wild
T2987 1417-1421 NN denotes type
T2988 1416-1417 HYPH denotes -
T2989 1422-1429 NNS denotes embryos
T2990 1430-1431 -LRB- denotes [
T2991 1431-1433 CD denotes 22
T2992 1433-1434 -RRB- denotes ]
T2993 1434-1435 . denotes .
T2994 1435-1646 sentence denotes Therefore, the inappropriate expression of T and Evx1, the shortened primitive streak, and the absence of a morphological node, all suggest that the anterior primitive streak is deficient in the mutant embryos.
T2995 1436-1445 RB denotes Therefore
T2996 1568-1575 VBP denotes suggest
T2998 1447-1450 DT denotes the
T2999 1465-1475 NN denotes expression
R1490 T2712 T2713 det The,lack
R1491 T2713 T2714 nsubj lack,suggest
R1492 T2715 T2713 prep of,lack
R1493 T2716 T2717 det a,node
R1494 T2717 T2715 pobj node,of
R1495 T2718 T2717 amod morphological,node
R1496 T2719 T2713 cc and,lack
R1497 T2720 T2713 conj presence,lack
R1498 T2721 T2720 prep of,presence
R1499 T2722 T2723 det a,streak
R1500 T2723 T2721 pobj streak,of
R1501 T2724 T2723 amod shortened,streak
R1502 T2725 T2713 punct ", ",lack
R1503 T2726 T2727 advmod together,with
R1504 T2727 T2713 prep with,lack
R1505 T2728 T2729 amod reduced,neuroectoderm
R1506 T2729 T2727 pobj neuroectoderm,with
R1507 T2730 T2729 cc and,neuroectoderm
R1508 T2731 T2729 conj lack,neuroectoderm
R1509 T2732 T2731 prep of,lack
R1510 T2733 T2732 pobj headfolds,of
R1511 T2734 T2714 punct ", ",suggest
R1512 T2735 T2736 mark that,impaired
R1513 T2736 T2714 ccomp impaired,suggest
R1514 T2737 T2738 amod anterior,streak
R1515 T2738 T2739 compound streak,formation
R1516 T2739 T2736 nsubjpass formation,impaired
R1517 T2740 T2736 aux may,impaired
R1518 T2741 T2736 auxpass be,impaired
R1519 T2742 T2736 prep in,impaired
R1520 T2743 T2744 npadvmod huntingtin,deficient
R1521 T2744 T2745 amod deficient,embryos
R1522 T2745 T2742 pobj embryos,in
R1523 T2746 T2714 punct .,suggest
R1524 T2748 T2749 aux To,investigate
R1525 T2749 T2750 advcl investigate,examined
R1526 T2751 T2752 det this,possibility
R1527 T2752 T2749 dobj possibility,investigate
R1528 T2753 T2750 punct ", ",examined
R1529 T2754 T2750 nsubj we,examined
R1530 T2755 T2756 compound mesoderm,formation
R1531 T2756 T2750 dobj formation,examined
R1532 T2757 T2750 prep in,examined
R1533 T2758 T2759 compound mutant,embryos
R1534 T2759 T2757 pobj embryos,in
R1535 T2760 T2750 punct .,examined
R1536 T2762 T2763 nsubjpass Mesoderm,specified
R1537 T2764 T2763 auxpass is,specified
R1538 T2765 T2763 prep in,specified
R1539 T2766 T2767 det the,embryos
R1540 T2767 T2765 pobj embryos,in
R1541 T2768 T2767 compound mutant,embryos
R1542 T2769 T2763 punct ", ",specified
R1543 T2770 T2771 mark as,marked
R1544 T2771 T2763 advcl marked,specified
R1545 T2772 T2771 agent by,marked
R1546 T2773 T2774 det the,expression
R1547 T2774 T2772 pobj expression,by
R1548 T2775 T2774 prep of,expression
R1549 T2776 T2775 pobj T,of
R1550 T2777 T2776 punct (,T
R1551 T2778 T2776 appos Brachyury,T
R1552 T2779 T2776 punct ),T
R1553 T2780 T2776 cc and,T
R1554 T2781 T2776 conj Evx1,T
R1555 T2782 T2783 punct (,Fig.
R1556 T2783 T2771 parataxis Fig.,marked
R1557 T2784 T2783 nummod 2A,Fig.
R1558 T2785 T2786 punct –,F
R1559 T2786 T2783 prep F,Fig.
R1560 T2787 T2783 punct ),Fig.
R1561 T2788 T2763 punct .,specified
R1562 T2790 T2791 advmod However,reveals
R1563 T2792 T2791 punct ", ",reveals
R1564 T2793 T2794 amod close,inspection
R1565 T2794 T2791 nsubj inspection,reveals
R1566 T2795 T2794 prep of,inspection
R1567 T2796 T2797 det the,data
R1568 T2797 T2795 pobj data,of
R1569 T2798 T2799 amod abnormal,patterning
R1570 T2799 T2791 dobj patterning,reveals
R1571 T2800 T2791 prep within,reveals
R1572 T2801 T2802 det this,tissue
R1573 T2802 T2800 pobj tissue,within
R1574 T2803 T2802 cc and,tissue
R1575 T2804 T2805 poss its,derivatives
R1576 T2805 T2802 conj derivatives,tissue
R1577 T2806 T2791 punct .,reveals
R1578 T2807 T2808 nsubjpass T,detected
R1579 T2810 T2807 punct ", ",T
R1580 T2811 T2812 advmod normally,expressed
R1581 T2812 T2807 acl expressed,T
R1582 T2813 T2812 prep in,expressed
R1583 T2814 T2815 det the,streak
R1584 T2815 T2813 pobj streak,in
R1585 T2816 T2815 amod primitive,streak
R1586 T2817 T2815 punct ", ",streak
R1587 T2818 T2815 conj node,streak
R1588 T2819 T2818 cc and,node
R1589 T2820 T2821 amod axial,process
R1590 T2821 T2818 conj process,node
R1591 T2822 T2821 compound head,process
R1592 T2823 T2821 punct /,process
R1593 T2824 T2825 compound notochord,mesoderm
R1594 T2825 T2821 appos mesoderm,process
R1595 T2826 T2827 punct [,22
R1596 T2827 T2815 parataxis 22,streak
R1597 T2828 T2827 punct ],22
R1598 T2829 T2808 punct ", ",detected
R1599 T2830 T2808 auxpass is,detected
R1600 T2831 T2808 prep in,detected
R1601 T2832 T2833 det the,streak
R1602 T2833 T2831 pobj streak,in
R1603 T2834 T2833 amod shortened,streak
R1604 T2835 T2833 cc and,streak
R1605 T2836 T2837 amod axial,mesoderm
R1606 T2837 T2833 conj mesoderm,streak
R1607 T2838 T2808 prep in,detected
R1608 T2839 T2840 nmod Hdhex4,embryos
R1609 T2840 T2838 pobj embryos,in
R1610 T2841 T2839 punct /,Hdhex4
R1611 T2842 T2839 nummod 5,Hdhex4
R1612 T2843 T2839 punct /,Hdhex4
R1613 T2844 T2839 appos Hdhex4,Hdhex4
R1614 T2845 T2844 punct /,Hdhex4
R1615 T2846 T2844 nummod 5,Hdhex4
R1616 T2847 T2808 punct ", ",detected
R1617 T2848 T2808 advcl extending,detected
R1618 T2849 T2848 advmod rostrally,extending
R1619 T2850 T2848 prep from,extending
R1620 T2851 T2852 det a,region
R1621 T2852 T2850 pobj region,from
R1622 T2853 T2852 prep of,region
R1623 T2854 T2855 advmod weakly,positive
R1624 T2855 T2856 amod positive,cells
R1625 T2856 T2853 pobj cells,of
R1626 T2857 T2858 punct (,B
R1627 T2964 T2962 nummod 2E,F
R1628 T2965 T2962 punct ",",F
R1629 T2966 T2962 punct ),F
R1630 T2967 T2920 punct .,expressed
R1631 T2969 T2970 amod Extraembryonic,mesoderm
R1632 T2970 T2971 nsubj mesoderm,express
R1633 T2972 T2970 punct ", ",mesoderm
R1634 T2973 T2970 acl derived,mesoderm
R1635 T2858 T2848 parataxis B,extending
R1636 T2974 T2973 prep from,derived
R1637 T2859 T2858 dep Fig.,B
R1638 T2860 T2859 nummod 2A,Fig.
R1639 T2975 T2976 det the,streak
R1640 T2861 T2858 punct ",",B
R1641 T2862 T2858 punct ),B
R1642 T2976 T2974 pobj streak,from
R1643 T2863 T2808 punct .,detected
R1644 T2977 T2976 amod proximal,streak
R1645 T2865 T2866 compound T,expression
R1646 T2866 T2867 nsubj expression,appears
R1647 T2978 T2971 punct ", ",express
R1648 T2868 T2867 oprd weaker,appears
R1649 T2869 T2867 punct ", ",appears
R1650 T2979 T2971 aux does,express
R1651 T2870 T2867 advmod however,appears
R1652 T2871 T2867 punct ", ",appears
R1653 T2872 T2867 prep in,appears
R1654 T2980 T2971 neg not,express
R1655 T2873 T2874 det the,streak
R1656 T2874 T2872 pobj streak,in
R1657 T2875 T2874 amod anterior,streak
R1658 T2981 T2971 advmod normally,express
R1659 T2876 T2867 punct ", ",appears
R1660 T2877 T2867 advcl corresponding,appears
R1661 T2878 T2877 prep to,corresponding
R1662 T2982 T2971 dobj T,express
R1663 T2879 T2878 pobj cells,to
R1664 T2880 T2881 dep that,give
R1665 T2881 T2879 relcl give,cells
R1666 T2983 T2982 cc or,T
R1667 T2882 T2881 aux will,give
R1668 T2883 T2881 dobj rise,give
R1669 T2884 T2881 prep to,give
R1670 T2984 T2982 conj Evx1,T
R1671 T2885 T2886 amod axial,mesoderm
R1672 T2886 T2884 pobj mesoderm,to
R1673 T2985 T2971 prep in,express
R1674 T2887 T2888 punct (,Fig.
R1675 T2888 T2881 parataxis Fig.,give
R1676 T2889 T2888 nummod 2D,Fig.
R1677 T2986 T2987 amod wild,type
R1678 T2890 T2888 punct ),Fig.
R1679 T2891 T2867 punct .,appears
R1680 T2893 T2894 nsubjpass T,expressed
R1681 T2895 T2894 auxpass is,expressed
R1682 T2987 T2989 compound type,embryos
R1683 T2896 T2894 advmod also,expressed
R1684 T2897 T2894 advmod ectopically,expressed
R1685 T2898 T2894 prep in,expressed
R1686 T2899 T2900 nmod mutant,mesoderm
R1687 T2988 T2987 punct -,type
R1688 T2900 T2898 pobj mesoderm,in
R1689 T2901 T2900 amod extraembryonic,mesoderm
R1690 T2902 T2894 prep at,expressed
R1691 T2989 T2985 pobj embryos,in
R1692 T2903 T2904 det the,junction
R1693 T2904 T2902 pobj junction,at
R1694 T2905 T2904 amod anterior,junction
R1695 T2990 T2991 punct [,22
R1696 T2906 T2904 amod embryonic,junction
R1697 T2907 T2902 cc and,at
R1698 T2908 T2902 conj along,at
R1699 T2909 T2910 det the,chorion
R1700 T2991 T2971 parataxis 22,express
R1701 T2910 T2908 pobj chorion,along
R1702 T2911 T2912 punct (,D
R1703 T2992 T2991 punct ],22
R1704 T2912 T2894 parataxis D,expressed
R1705 T2913 T2912 nmod Fig.,D
R1706 T2914 T2912 nummod 2B,D
R1707 T2993 T2971 punct .,express
R1708 T2915 T2912 punct ",",D
R1709 T2916 T2912 punct ),D
R1710 T2917 T2894 punct .,expressed
R1711 T2995 T2996 advmod Therefore,suggest
R1712 T2919 T2920 advmod Similarly,expressed
R1713 T2921 T2920 punct ", ",expressed
R1714 T2997 T2996 punct ", ",suggest
R1715 T2922 T2920 nsubjpass Evx1,expressed
R1716 T2923 T2922 punct ", ",Evx1
R1717 T2924 T2925 advmod normally,expressed
R1718 T2925 T2922 acl expressed,Evx1
R1719 T2926 T2925 prep in,expressed
R1720 T2998 T2999 det the,expression
R1721 T2927 T2928 amod primitive,mesoderm
R1722 T2928 T2926 pobj mesoderm,in
R1723 T2929 T2928 compound streak,mesoderm
R1724 T2999 T2996 nsubj expression,suggest
R1725 T2930 T2925 prep at,expressed
R1726 T2931 T2930 pobj E7.5,at
R1727 T2932 T2933 mark with,levels
R1728 T3000 T2999 amod inappropriate,expression
R1729 T2933 T2925 advcl levels,expressed
R1730 T2934 T2933 amod highest,levels
R1731 T2935 T2933 prep in,levels
R1732 T2936 T2937 amod proximal,cells
R1733 T2937 T2935 pobj cells,in
R1734 T3001 T2999 prep of,expression
R1735 T2938 T2939 punct [,23
R1736 T2939 T2933 parataxis 23,levels
R1737 T3002 T3001 pobj T,of
R1738 T2940 T2939 punct ],23
R1739 T3003 T3002 cc and,T
R1740 T2941 T2920 punct ", ",expressed
R1741 T3004 T3002 conj Evx1,T
R1742 T2942 T2920 auxpass is,expressed
R1743 T3005 T2999 punct ", ",expression
R1744 T2943 T2920 prep in,expressed
R1745 T2944 T2945 det the,streak
R1746 T2945 T2943 pobj streak,in
R1747 T3006 T3007 det the,streak
R1748 T2946 T2945 amod proximal,streak
R1749 T2947 T2945 amod shortened,streak
R1750 T3007 T2999 conj streak,expression
R1751 T2948 T2920 cc but,expressed
R1752 T2949 T2950 auxpass is,expressed
R1753 T2950 T2920 conj expressed,expressed
R1754 T3008 T3007 amod shortened,streak
R1755 T2951 T2950 advmod also,expressed
R1756 T2952 T2950 advmod aberrantly,expressed
R1757 T2953 T2950 prep throughout,expressed
R1758 T3009 T3007 amod primitive,streak
R1759 T2954 T2955 det the,mesoderm
R1760 T2955 T2953 pobj mesoderm,throughout
R1761 T2956 T2955 amod extraembryonic,mesoderm
R1762 T2957 T2955 punct ", ",mesoderm
R1763 T3010 T3007 punct ", ",streak
R1764 T2958 T2955 conj allantois,mesoderm
R1765 T2959 T2958 cc and,allantois
R1766 T2960 T2958 conj chorion,allantois
R1767 T3011 T3007 cc and,streak
R1768 T2961 T2962 punct (,F
R1769 T2962 T2950 parataxis F,expressed
R1770 T3012 T3013 det the,absence
R1771 T2963 T2962 nmod Fig.,F
R1772 T3013 T3007 conj absence,streak
R1773 T3014 T3013 prep of,absence
R1774 T3015 T3016 det a,node
R1775 T3016 T3014 pobj node,of
R1776 T3017 T3016 amod morphological,node
R1777 T3018 T2999 punct ", ",expression
R1778 T3019 T2999 appos all,expression
R1779 T3020 T3021 mark that,is
R1780 T3021 T2996 ccomp is,suggest
R1781 T3022 T3023 det the,streak
R1786 T3023 T3021 nsubj streak,is
R1788 T3024 T3023 amod anterior,streak
R1790 T3025 T3023 amod primitive,streak
R1793 T3026 T3021 acomp deficient,is
R1795 T3027 T3021 prep in,is
R1800 T3028 T3029 det the,embryos
R1803 T3029 T3027 pobj embryos,in
R1808 T3030 T3029 compound mutant,embryos
R1812 T3031 T2996 punct .,suggest

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2114 683-686 PR_EXT:000008840 denotes Hdh
T2081 28-32 UBERON:0003062 denotes node
T2082 61-67 UBERON:0004341 denotes streak
T2083 91-104 UBERON:0002346 denotes neuroectoderm
T2084 117-126 UBERON:0009746 denotes headfolds
T2085 150-156 UBERON:0004341 denotes streak
T2086 150-166 GO:0090009 denotes streak formation
T2087 186-196 PR_EXT:000008840 denotes huntingtin
T2088 207-214 UBERON:0000922 denotes embryos
T2089 261-269 UBERON:0000926 denotes mesoderm
T2090 261-279 GO:0007498 denotes mesoderm formation
T2091 283-289 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T2092 290-297 UBERON:0000922 denotes embryos
T2093 299-307 UBERON:0000926 denotes Mesoderm
T2094 328-334 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T2095 335-342 UBERON:0000922 denotes embryos
T2096 347-353 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes marked
T2097 361-371 GO:0010467 denotes expression
T2098 375-376 PR_EXT:000016001 denotes T
T2099 378-387 PR_EXT:000016001 denotes Brachyury
T2100 393-397 PR_EXT:000007241 denotes Evx1
T2101 466-476 GO_PATO_EXT:biological_patterning_process_or_quality denotes patterning
T2102 489-495 UBERON:0000479 denotes tissue
T2103 516-517 PR_EXT:000016001 denotes T
T2104 528-537 GO:0010467 denotes expressed
T2105 545-561 UBERON:0004341 denotes primitive streak
T2106 563-567 UBERON:0003062 denotes node
T2107 578-582 UBERON:0000033 denotes head
T2108 583-590 UBERON:0004529 denotes process
T2109 591-600 UBERON:0002328 denotes notochord
T2110 601-609 UBERON:0000926 denotes mesoderm
T2111 645-651 UBERON:0004341 denotes streak
T2112 656-670 UBERON:0003068 denotes axial mesoderm
T2113 674-677 PR_EXT:000008840 denotes Hdh
T2115 692-699 UBERON:0000922 denotes embryos
T2116 754-759 CL_GO_EXT:cell denotes cells
T2117 773-774 PR_EXT:000016001 denotes T
T2118 775-785 GO:0010467 denotes expression
T2119 827-833 UBERON:0004341 denotes streak
T2120 852-857 CL_GO_EXT:cell denotes cells
T2121 881-895 UBERON:0003068 denotes axial mesoderm
T2122 907-908 PR_EXT:000016001 denotes T
T2123 929-938 GO:0010467 denotes expressed
T2124 942-948 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T2125 949-972 UBERON:0005728 denotes extraembryonic mesoderm
T2126 989-998 UBERON:0000922 denotes embryonic
T2127 1022-1029 UBERON:0003124 denotes chorion
T2128 1054-1058 PR_EXT:000007241 denotes Evx1
T2129 1069-1078 GO:0010467 denotes expressed
T2130 1082-1098 UBERON:0004341 denotes primitive streak
T2131 1099-1107 UBERON:0000926 denotes mesoderm
T2132 1148-1153 CL_GO_EXT:cell denotes cells
T2133 1163-1172 GO:0010467 denotes expressed
T2134 1199-1205 UBERON:0004341 denotes streak
T2135 1229-1238 GO:0010467 denotes expressed
T2136 1254-1277 UBERON:0005728 denotes extraembryonic mesoderm
T2137 1279-1288 UBERON:0004340 denotes allantois
T2138 1293-1300 UBERON:0003124 denotes chorion
T2139 1314-1337 UBERON:0005728 denotes Extraembryonic mesoderm
T2140 1365-1371 UBERON:0004341 denotes streak
T2141 1391-1398 GO:0010467 denotes express
T2142 1399-1400 PR_EXT:000016001 denotes T
T2143 1404-1408 PR_EXT:000007241 denotes Evx1
T2144 1412-1421 SO_EXT:wild_type_entity_or_quality denotes wild-type
T2145 1422-1429 UBERON:0000922 denotes embryos
T2146 1465-1475 GO:0010467 denotes expression
T2147 1479-1480 PR_EXT:000016001 denotes T
T2148 1485-1489 PR_EXT:000007241 denotes Evx1
T2149 1505-1521 UBERON:0004341 denotes primitive streak
T2150 1558-1562 UBERON:0003062 denotes node
T2151 1594-1610 UBERON:0004341 denotes primitive streak
T2152 1631-1637 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T2153 1638-1645 UBERON:0000922 denotes embryos

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1882 578-582 UBERON:0000033 denotes head
T1883 583-590 UBERON:0004529 denotes process
T1884 591-600 UBERON:0002328 denotes notochord
T1885 601-609 UBERON:0000926 denotes mesoderm
T1886 645-651 UBERON:0004341 denotes streak
T1887 656-670 UBERON:0003068 denotes axial mesoderm
T1888 674-677 PR:000008840 denotes Hdh
T1889 683-686 PR:000008840 denotes Hdh
T1890 692-699 UBERON:0000922 denotes embryos
T1891 773-774 PR:000016001 denotes T
T1892 775-785 GO:0010467 denotes expression
T1893 827-833 UBERON:0004341 denotes streak
T1894 881-895 UBERON:0003068 denotes axial mesoderm
T1895 907-908 PR:000016001 denotes T
T1896 929-938 GO:0010467 denotes expressed
T1897 949-972 UBERON:0005728 denotes extraembryonic mesoderm
T1898 989-998 UBERON:0000922 denotes embryonic
T1899 1022-1029 UBERON:0003124 denotes chorion
T1900 1054-1058 PR:000007241 denotes Evx1
T1901 1069-1078 GO:0010467 denotes expressed
T1902 1082-1098 UBERON:0004341 denotes primitive streak
T1903 1099-1107 UBERON:0000926 denotes mesoderm
T1904 1163-1172 GO:0010467 denotes expressed
T1905 1199-1205 UBERON:0004341 denotes streak
T1906 1229-1238 GO:0010467 denotes expressed
T1907 1254-1277 UBERON:0005728 denotes extraembryonic mesoderm
T1908 1279-1288 UBERON:0004340 denotes allantois
T1909 1293-1300 UBERON:0003124 denotes chorion
T1910 1314-1337 UBERON:0005728 denotes Extraembryonic mesoderm
T1911 1365-1371 UBERON:0004341 denotes streak
T1912 1391-1398 GO:0010467 denotes express
T1913 1399-1400 PR:000016001 denotes T
T1914 1404-1408 PR:000007241 denotes Evx1
T1915 1422-1429 UBERON:0000922 denotes embryos
T1916 1465-1475 GO:0010467 denotes expression
T1917 1479-1480 PR:000016001 denotes T
T1918 1485-1489 PR:000007241 denotes Evx1
T1919 1505-1521 UBERON:0004341 denotes primitive streak
T1920 1558-1562 UBERON:0003062 denotes node
T1921 1594-1610 UBERON:0004341 denotes primitive streak
T1922 1638-1645 UBERON:0000922 denotes embryos
T1860 28-32 UBERON:0003062 denotes node
T1861 61-67 UBERON:0004341 denotes streak
T1862 91-104 UBERON:0002346 denotes neuroectoderm
T1863 117-126 UBERON:0009746 denotes headfolds
T1864 150-156 UBERON:0004341 denotes streak
T1865 150-166 GO:0090009 denotes streak formation
T1866 186-196 PR:000008840 denotes huntingtin
T1867 207-214 UBERON:0000922 denotes embryos
T1868 261-269 UBERON:0000926 denotes mesoderm
T1869 261-279 GO:0007498 denotes mesoderm formation
T1870 290-297 UBERON:0000922 denotes embryos
T1871 299-307 UBERON:0000926 denotes Mesoderm
T1872 335-342 UBERON:0000922 denotes embryos
T1873 361-371 GO:0010467 denotes expression
T1874 375-376 PR:000016001 denotes T
T1875 378-387 PR:000016001 denotes Brachyury
T1876 393-397 PR:000007241 denotes Evx1
T1877 489-495 UBERON:0000479 denotes tissue
T1878 516-517 PR:000016001 denotes T
T1879 528-537 GO:0010467 denotes expressed
T1880 545-561 UBERON:0004341 denotes primitive streak
T1881 563-567 UBERON:0003062 denotes node