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PMC:1208873 / 571-1507 JSONTXT

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Id Subject Object Predicate Lexical cue
T297 0-7 NNS denotes Results
T298 7-155 sentence denotes In the absence of huntingtin, expression of nutritive genes appears normal but E7.0–7.5 embryos exhibit a unique combination of patterning defects.
T299 8-10 IN denotes In
T300 68-75 VBZ denotes appears
T301 11-14 DT denotes the
T302 15-22 NN denotes absence
T303 23-25 IN denotes of
T304 26-36 NN denotes huntingtin
T305 36-38 , denotes ,
T306 38-48 NN denotes expression
T307 49-51 IN denotes of
T308 52-61 JJ denotes nutritive
T309 62-67 NNS denotes genes
T310 76-82 JJ denotes normal
T311 83-86 CC denotes but
T312 87-91 NN denotes E7.0
T313 96-103 NNS denotes embryos
T314 91-92 SYM denotes –
T315 92-95 CD denotes 7.5
T316 104-111 VBP denotes exhibit
T317 112-113 DT denotes a
T318 121-132 NN denotes combination
T319 114-120 JJ denotes unique
T320 133-135 IN denotes of
T321 136-146 NN denotes patterning
T322 147-154 NNS denotes defects
T323 154-155 . denotes .
T324 155-280 sentence denotes Notable are a shortened primitive streak, absence of a proper node and diminished production of anterior streak derivatives.
T325 156-163 JJ denotes Notable
T326 164-167 VBP denotes are
T327 168-169 DT denotes a
T328 190-196 NN denotes streak
T329 170-179 VBN denotes shortened
T330 180-189 JJ denotes primitive
T331 196-198 , denotes ,
T332 198-205 NN denotes absence
T333 206-208 IN denotes of
T334 209-210 DT denotes a
T335 218-222 NN denotes node
T336 211-217 JJ denotes proper
T337 223-226 CC denotes and
T338 227-237 VBN denotes diminished
T339 238-248 NN denotes production
T340 249-251 IN denotes of
T341 252-260 JJ denotes anterior
T342 261-267 NN denotes streak
T343 268-279 NNS denotes derivatives
T344 279-280 . denotes .
T345 280-444 sentence denotes Reduced Wnt3a, Tbx6 and Dll1 expression signify decreased paraxial mesoderm and reduced Otx2 expression and lack of headfolds denote a failure of head development.
T346 281-288 VBN denotes Reduced
T347 310-320 NN denotes expression
T348 289-294 NN denotes Wnt3a
T349 294-296 , denotes ,
T350 296-300 NN denotes Tbx6
T351 301-304 CC denotes and
T352 305-309 NN denotes Dll1
T353 321-328 VBP denotes signify
T354 329-338 VBN denotes decreased
T355 348-356 NN denotes mesoderm
T356 339-347 JJ denotes paraxial
T357 357-360 CC denotes and
T358 361-368 VBN denotes reduced
T359 374-384 NN denotes expression
T360 369-373 NN denotes Otx2
T361 385-388 CC denotes and
T362 389-393 NN denotes lack
T363 407-413 VBP denotes denote
T364 394-396 IN denotes of
T365 397-406 NNS denotes headfolds
T366 414-415 DT denotes a
T367 416-423 NN denotes failure
T368 424-426 IN denotes of
T369 427-431 NN denotes head
T370 432-443 NN denotes development
T371 443-444 . denotes .
T372 444-676 sentence denotes In addition, genes initially broadly expressed are not properly restricted to the posterior, as evidenced by the ectopic expression of Nodal, Fgf8 and Gsc in the epiblast and T (Brachyury) and Evx1 in proximal mesoderm derivatives.
T373 445-447 IN denotes In
T374 509-519 VBN denotes restricted
T375 448-456 NN denotes addition
T376 456-458 , denotes ,
T377 458-463 NNS denotes genes
T378 464-473 RB denotes initially
T379 482-491 VBN denotes expressed
T380 474-481 RB denotes broadly
T381 492-495 VBP denotes are
T382 496-499 RB denotes not
T383 500-508 RB denotes properly
T384 520-522 IN denotes to
T385 523-526 DT denotes the
T386 527-536 JJ denotes posterior
T387 536-538 , denotes ,
T388 538-540 IN denotes as
T389 541-550 VBN denotes evidenced
T390 551-553 IN denotes by
T391 554-557 DT denotes the
T392 566-576 NN denotes expression
T393 558-565 JJ denotes ectopic
T394 577-579 IN denotes of
T395 580-585 NN denotes Nodal
T396 585-587 , denotes ,
T397 587-591 NN denotes Fgf8
T398 592-595 CC denotes and
T399 596-599 NN denotes Gsc
T400 600-602 IN denotes in
T401 603-606 DT denotes the
T402 607-615 NN denotes epiblast
T403 616-619 CC denotes and
T404 620-621 NN denotes T
T405 623-632 NNP denotes Brachyury
T406 622-623 -LRB- denotes (
T407 632-633 -RRB- denotes )
T408 634-637 CC denotes and
T409 638-642 NN denotes Evx1
T410 643-645 IN denotes in
T411 646-654 JJ denotes proximal
T412 664-675 NNS denotes derivatives
T413 655-663 NN denotes mesoderm
T414 675-676 . denotes .
T415 676-797 sentence denotes Despite impaired posterior restriction and anterior streak deficits, overall anterior/posterior polarity is established.
T416 677-684 IN denotes Despite
T417 785-796 VBN denotes established
T418 685-693 VBN denotes impaired
T419 704-715 NN denotes restriction
T420 694-703 JJ denotes posterior
T421 716-719 CC denotes and
T422 720-728 JJ denotes anterior
T423 729-735 NN denotes streak
T424 736-744 NNS denotes deficits
T425 744-746 , denotes ,
T426 746-753 JJ denotes overall
T427 773-781 NN denotes polarity
T428 754-762 JJ denotes anterior
T429 763-772 JJ denotes posterior
T430 762-763 HYPH denotes /
T431 782-784 VBZ denotes is
T432 796-797 . denotes .
T433 797-936 sentence denotes A single primitive streak forms and marker expression shows that the anterior epiblast and anterior visceral endoderm (AVE) are specified.
T434 798-799 DT denotes A
T435 817-823 NN denotes streak
T436 800-806 JJ denotes single
T437 807-816 JJ denotes primitive
T438 824-829 VBZ denotes forms
T439 830-833 CC denotes and
T440 834-840 NN denotes marker
T441 841-851 NN denotes expression
T442 852-857 VBZ denotes shows
T443 858-862 IN denotes that
T444 926-935 VBN denotes specified
T445 863-866 DT denotes the
T446 876-884 NN denotes epiblast
T447 867-875 JJ denotes anterior
T448 885-888 CC denotes and
T449 889-897 JJ denotes anterior
T450 907-915 NN denotes endoderm
T451 898-906 JJ denotes visceral
T452 916-917 -LRB- denotes (
T453 917-920 NN denotes AVE
T454 920-921 -RRB- denotes )
T455 922-925 VBP denotes are
T456 935-936 . denotes .
R86 T299 T300 prep In,appears
R87 T301 T302 det the,absence
R88 T302 T299 pobj absence,In
R89 T303 T302 prep of,absence
R90 T304 T303 pobj huntingtin,of
R91 T305 T300 punct ", ",appears
R92 T306 T300 nsubj expression,appears
R93 T307 T306 prep of,expression
R94 T308 T309 amod nutritive,genes
R95 T309 T307 pobj genes,of
R96 T310 T300 oprd normal,appears
R97 T311 T300 cc but,appears
R98 T312 T313 nmod E7.0,embryos
R100 T314 T315 punct –,7.5
R101 T315 T312 prep 7.5,E7.0
R102 T316 T300 conj exhibit,appears
R103 T317 T318 det a,combination
R104 T318 T316 dobj combination,exhibit
R105 T319 T318 amod unique,combination
R106 T320 T318 prep of,combination
R107 T321 T322 compound patterning,defects
R108 T322 T320 pobj defects,of
R109 T323 T316 punct .,exhibit
R110 T325 T326 acomp Notable,are
R111 T327 T328 det a,streak
R113 T329 T328 amod shortened,streak
R114 T330 T328 amod primitive,streak
R115 T331 T328 punct ", ",streak
R116 T332 T328 conj absence,streak
R117 T333 T332 prep of,absence
R118 T334 T335 det a,node
R119 T335 T333 pobj node,of
R120 T336 T335 amod proper,node
R121 T337 T332 cc and,absence
R122 T338 T339 amod diminished,production
R123 T339 T332 conj production,absence
R124 T340 T339 prep of,production
R125 T341 T342 amod anterior,streak
R126 T342 T343 compound streak,derivatives
R127 T343 T340 pobj derivatives,of
R128 T344 T326 punct .,are
R129 T346 T347 amod Reduced,expression
R130 T347 T353 nsubj expression,signify
R131 T348 T347 nmod Wnt3a,expression
R132 T349 T348 punct ", ",Wnt3a
R133 T350 T348 conj Tbx6,Wnt3a
R134 T351 T350 cc and,Tbx6
R135 T352 T350 conj Dll1,Tbx6
R136 T354 T355 amod decreased,mesoderm
R137 T355 T353 dobj mesoderm,signify
R138 T356 T355 amod paraxial,mesoderm
R139 T357 T355 cc and,mesoderm
R140 T358 T359 amod reduced,expression
R141 T359 T355 conj expression,mesoderm
R142 T360 T359 compound Otx2,expression
R143 T361 T353 cc and,signify
R144 T362 T363 nsubj lack,denote
R146 T364 T362 prep of,lack
R147 T365 T364 pobj headfolds,of
R148 T366 T367 det a,failure
R149 T367 T363 dobj failure,denote
R150 T368 T367 prep of,failure
R151 T369 T370 compound head,development
R152 T370 T368 pobj development,of
R153 T371 T363 punct .,denote
R154 T373 T374 prep In,restricted
R155 T375 T373 pobj addition,In
R156 T376 T374 punct ", ",restricted
R157 T377 T374 nsubjpass genes,restricted
R158 T378 T379 advmod initially,expressed
R159 T379 T377 acl expressed,genes
R160 T380 T379 advmod broadly,expressed
R161 T381 T374 auxpass are,restricted
R162 T382 T374 neg not,restricted
R163 T383 T374 advmod properly,restricted
R164 T384 T374 prep to,restricted
R165 T385 T386 det the,posterior
R166 T386 T384 pobj posterior,to
R167 T387 T374 punct ", ",restricted
R168 T388 T389 mark as,evidenced
R169 T389 T374 advcl evidenced,restricted
R170 T390 T389 agent by,evidenced
R171 T391 T392 det the,expression
R172 T392 T390 pobj expression,by
R173 T393 T392 amod ectopic,expression
R174 T394 T392 prep of,expression
R175 T395 T394 pobj Nodal,of
R176 T396 T395 punct ", ",Nodal
R177 T397 T395 conj Fgf8,Nodal
R178 T398 T397 cc and,Fgf8
R179 T399 T397 conj Gsc,Fgf8
R180 T400 T392 prep in,expression
R181 T401 T402 det the,epiblast
R182 T402 T400 pobj epiblast,in
R183 T403 T402 cc and,epiblast
R184 T404 T405 nmod T,Brachyury
R185 T405 T402 conj Brachyury,epiblast
R186 T406 T405 punct (,Brachyury
R187 T407 T405 punct ),Brachyury
R188 T408 T405 cc and,Brachyury
R189 T409 T405 conj Evx1,Brachyury
R190 T410 T392 prep in,expression
R191 T411 T412 amod proximal,derivatives
R192 T412 T410 pobj derivatives,in
R193 T413 T412 compound mesoderm,derivatives
R194 T414 T374 punct .,restricted
R195 T416 T417 prep Despite,established
R196 T418 T419 amod impaired,restriction
R197 T419 T416 pobj restriction,Despite
R198 T420 T419 amod posterior,restriction
R199 T421 T419 cc and,restriction
R200 T422 T423 amod anterior,streak
R201 T423 T424 compound streak,deficits
R202 T424 T419 conj deficits,restriction
R203 T425 T417 punct ", ",established
R204 T426 T427 amod overall,polarity
R205 T427 T417 nsubjpass polarity,established
R206 T428 T429 amod anterior,posterior
R207 T429 T427 amod posterior,polarity
R208 T430 T429 punct /,posterior
R209 T431 T417 auxpass is,established
R210 T432 T417 punct .,established
R211 T434 T435 det A,streak
R213 T436 T435 amod single,streak
R214 T437 T435 amod primitive,streak
R215 T439 T438 cc and,forms
R216 T440 T441 compound marker,expression
R217 T441 T442 nsubj expression,shows
R218 T442 T438 conj shows,forms
R219 T443 T444 mark that,specified
R220 T444 T442 ccomp specified,shows
R221 T445 T446 det the,epiblast
R222 T446 T444 nsubjpass epiblast,specified
R223 T447 T446 amod anterior,epiblast
R224 T448 T446 cc and,epiblast
R225 T449 T450 amod anterior,endoderm
R226 T450 T446 conj endoderm,epiblast
R227 T451 T450 amod visceral,endoderm
R228 T452 T450 punct (,endoderm
R229 T453 T450 appos AVE,endoderm
R230 T454 T444 punct ),specified
R231 T455 T444 auxpass are,specified
R232 T456 T442 punct .,shows
R99 T313 T316 nsubj embryos,exhibit
R112 T328 T326 nsubj streak,are
R145 T363 T353 conj denote,signify
R212 T435 T438 nsubj streak,forms

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T147 26-36 PR_EXT:000008840 denotes huntingtin
T148 38-48 GO:0010467 denotes expression
T149 62-67 SO_EXT:0000704 denotes genes
T150 96-103 UBERON:0000922 denotes embryos
T151 136-146 GO_PATO_EXT:biological_patterning_process_or_quality denotes patterning
T152 180-196 UBERON:0004341 denotes primitive streak
T153 218-222 UBERON:0003062 denotes node
T154 261-267 UBERON:0004341 denotes streak
T155 289-294 PR_EXT:000017443 denotes Wnt3a
T156 296-300 PR_EXT:000016154 denotes Tbx6
T157 305-309 PR_EXT:000006523 denotes Dll1
T158 310-320 GO:0010467 denotes expression
T159 339-356 UBERON:0003077 denotes paraxial mesoderm
T160 369-373 PR_EXT:000012086 denotes Otx2
T161 374-384 GO:0010467 denotes expression
T162 397-406 UBERON:0009746 denotes headfolds
T163 427-431 UBERON:0000033 denotes head
T164 427-443 GO:0060322 denotes head development
T165 458-463 SO_EXT:0000704 denotes genes
T166 482-491 GO:0010467 denotes expressed
T167 566-576 GO:0010467 denotes expression
T168 580-585 PR_EXT:000000105 denotes Nodal
T169 587-591 PR_EXT:000007499 denotes Fgf8
T170 596-599 PR_EXT:000008278 denotes Gsc
T171 607-615 UBERON:0002532 denotes epiblast
T172 620-621 PR_EXT:000016001 denotes T
T173 623-632 PR_EXT:000016001 denotes Brachyury
T174 638-642 PR_EXT:000007241 denotes Evx1
T175 655-675 UBERON:0004120 denotes mesoderm derivatives
T176 729-735 UBERON:0004341 denotes streak
T177 807-823 UBERON:0004341 denotes primitive streak
T178 834-840 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T179 841-851 GO:0010467 denotes expression
T180 876-884 UBERON:0002532 denotes epiblast
T181 889-915 UBERON:0004044 denotes anterior visceral endoderm
T182 917-920 UBERON:0004044 denotes AVE

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T76 26-36 PR:000008840 denotes huntingtin
T77 38-48 GO:0010467 denotes expression
T78 62-67 SO:0000704 denotes genes
T79 96-103 UBERON:0000922 denotes embryos
T80 180-196 UBERON:0004341 denotes primitive streak
T81 218-222 UBERON:0003062 denotes node
T82 261-267 UBERON:0004341 denotes streak
T83 289-294 PR:000017443 denotes Wnt3a
T84 296-300 PR:000016154 denotes Tbx6
T85 305-309 PR:000006523 denotes Dll1
T86 310-320 GO:0010467 denotes expression
T87 339-356 UBERON:0003077 denotes paraxial mesoderm
T88 369-373 PR:000012086 denotes Otx2
T89 374-384 GO:0010467 denotes expression
T90 397-406 UBERON:0009746 denotes headfolds
T91 427-431 UBERON:0000033 denotes head
T92 427-443 GO:0060322 denotes head development
T93 458-463 SO:0000704 denotes genes
T94 482-491 GO:0010467 denotes expressed
T95 566-576 GO:0010467 denotes expression
T96 580-585 PR:000000105 denotes Nodal
T97 587-591 PR:000007499 denotes Fgf8
T98 596-599 PR:000008278 denotes Gsc
T99 607-615 UBERON:0002532 denotes epiblast
T100 620-621 PR:000016001 denotes T
T101 623-632 PR:000016001 denotes Brachyury
T102 638-642 PR:000007241 denotes Evx1
T103 655-675 UBERON:0004120 denotes mesoderm derivatives
T104 729-735 UBERON:0004341 denotes streak
T105 807-823 UBERON:0004341 denotes primitive streak
T106 841-851 GO:0010467 denotes expression
T107 876-884 UBERON:0002532 denotes epiblast
T108 889-915 UBERON:0004044 denotes anterior visceral endoderm
T109 917-920 UBERON:0004044 denotes AVE