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PMC:1208873 / 31353-32184 JSONTXT

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Id Subject Object Predicate Lexical cue
T7532 11-14 PRP$ denotes Our
T7533 15-23 NNS denotes findings
T7534 24-32 VBP denotes indicate
T7535 33-37 IN denotes that
T7536 52-60 VBN denotes required
T7537 38-48 NN denotes huntingtin
T7538 49-51 VBZ denotes is
T7539 61-64 IN denotes for
T7540 65-71 JJ denotes proper
T7541 72-82 NN denotes patterning
T7542 83-85 IN denotes of
T7543 86-89 DT denotes the
T7544 90-98 NN denotes epiblast
T7545 99-105 IN denotes during
T7546 106-111 JJ denotes early
T7547 112-125 NN denotes embryogenesis
T7548 125-127 , denotes ,
T7549 127-130 IN denotes for
T7550 131-137 JJ denotes proper
T7551 163-172 NN denotes formation
T7552 138-146 JJ denotes anterior
T7553 147-153 NN denotes streak
T7554 154-157 CC denotes and
T7555 158-162 NN denotes node
T7556 172-174 , denotes ,
T7557 174-183 JJ denotes primitive
T7558 184-190 NN denotes streak
T7559 191-202 NN denotes progression
T7560 202-204 , denotes ,
T7561 204-212 JJ denotes paraxial
T7562 213-221 NN denotes mesoderm
T7563 236-245 NN denotes formation
T7564 222-225 CC denotes and
T7565 226-230 NN denotes head
T7566 231-235 NN denotes fold
T7567 245-247 , denotes ,
T7568 247-249 RB denotes as
T7569 255-257 IN denotes as
T7570 250-254 RB denotes well
T7571 258-261 IN denotes for
T7572 262-265 DT denotes the
T7573 273-284 NN denotes restriction
T7574 266-272 JJ denotes proper
T7575 285-287 IN denotes of
T7576 288-299 RB denotes transiently
T7577 300-309 VBN denotes expressed
T7578 342-347 NNS denotes genes
T7579 310-316 NN denotes growth
T7580 335-341 NN denotes factor
T7581 317-320 CC denotes and
T7582 321-334 NN denotes transcription
T7583 347-348 . denotes .
T7584 348-537 sentence denotes Knowledge of the molecular basis of these changes in huntingtin deficient embryos should facilitate the identification of the cellular pathways that are dependent on huntingtin activities.
T7585 349-358 NN denotes Knowledge
T7586 438-448 VB denotes facilitate
T7587 359-361 IN denotes of
T7588 362-365 DT denotes the
T7589 376-381 NN denotes basis
T7590 366-375 JJ denotes molecular
T7591 382-384 IN denotes of
T7592 385-390 DT denotes these
T7593 391-398 NNS denotes changes
T7594 399-401 IN denotes in
T7595 402-412 NN denotes huntingtin
T7596 413-422 JJ denotes deficient
T7597 423-430 NNS denotes embryos
T7598 431-437 MD denotes should
T7599 449-452 DT denotes the
T7600 453-467 NN denotes identification
T7601 468-470 IN denotes of
T7602 471-474 DT denotes the
T7603 484-492 NNS denotes pathways
T7604 475-483 JJ denotes cellular
T7605 493-497 WDT denotes that
T7606 498-501 VBP denotes are
T7607 502-511 JJ denotes dependent
T7608 512-514 IN denotes on
T7609 515-525 NN denotes huntingtin
T7610 526-536 NNS denotes activities
T7611 536-537 . denotes .
T7612 537-831 sentence denotes These will be important for implicating candidates to be assessed in the extraembryonic signals that determine anterior streak progression in the developing embryo and in delineating the dominant activity of the polyglutamine tract in huntingtin that determines the striatal specificity of HD.
T7613 538-543 DT denotes These
T7614 549-551 VB denotes be
T7615 544-548 MD denotes will
T7616 552-561 JJ denotes important
T7617 562-565 IN denotes for
T7618 566-577 VBG denotes implicating
T7619 578-588 NNS denotes candidates
T7620 589-591 TO denotes to
T7621 595-603 VBN denotes assessed
T7622 592-594 VB denotes be
T7623 604-606 IN denotes in
T7624 607-610 DT denotes the
T7625 626-633 NNS denotes signals
T7626 611-625 JJ denotes extraembryonic
T7627 634-638 WDT denotes that
T7628 639-648 VBP denotes determine
T7629 649-657 JJ denotes anterior
T7630 658-664 NN denotes streak
T7631 665-676 NN denotes progression
T7632 677-679 IN denotes in
T7633 680-683 DT denotes the
T7634 695-701 NN denotes embryo
T7635 684-694 VBG denotes developing
T7636 702-705 CC denotes and
T7637 706-708 IN denotes in
T7638 709-720 VBG denotes delineating
T7639 721-724 DT denotes the
T7640 734-742 NN denotes activity
T7641 725-733 JJ denotes dominant
T7642 743-745 IN denotes of
T7643 746-749 DT denotes the
T7644 764-769 NN denotes tract
T7645 750-763 NN denotes polyglutamine
T7646 770-772 IN denotes in
T7647 773-783 NN denotes huntingtin
T7648 784-788 WDT denotes that
T7649 789-799 VBZ denotes determines
T7650 800-803 DT denotes the
T7651 813-824 NN denotes specificity
T7652 804-812 JJ denotes striatal
T7653 825-827 IN denotes of
T7654 828-830 NN denotes HD
T7655 830-831 . denotes .
R4548 T7532 T7533 poss Our,findings
R4549 T7533 T7534 nsubj findings,indicate
R4550 T7535 T7536 mark that,required
R4551 T7536 T7534 ccomp required,indicate
R4552 T7537 T7536 nsubjpass huntingtin,required
R4553 T7538 T7536 auxpass is,required
R4554 T7539 T7536 prep for,required
R4555 T7540 T7541 amod proper,patterning
R4556 T7541 T7539 pobj patterning,for
R4557 T7542 T7541 prep of,patterning
R4558 T7543 T7544 det the,epiblast
R4559 T7544 T7542 pobj epiblast,of
R4560 T7545 T7541 prep during,patterning
R4561 T7546 T7547 amod early,embryogenesis
R4562 T7547 T7545 pobj embryogenesis,during
R4563 T7548 T7539 punct ", ",for
R4564 T7549 T7539 conj for,for
R4565 T7550 T7551 amod proper,formation
R4566 T7551 T7549 pobj formation,for
R4567 T7552 T7553 amod anterior,streak
R4568 T7553 T7551 nmod streak,formation
R4569 T7554 T7553 cc and,streak
R4570 T7555 T7553 conj node,streak
R4571 T7556 T7551 punct ", ",formation
R4572 T7557 T7558 amod primitive,streak
R4573 T7558 T7559 compound streak,progression
R4574 T7559 T7551 appos progression,formation
R4575 T7560 T7551 punct ", ",formation
R4576 T7561 T7562 amod paraxial,mesoderm
R4577 T7562 T7563 nmod mesoderm,formation
R4578 T7563 T7551 appos formation,formation
R4579 T7564 T7562 cc and,mesoderm
R4580 T7565 T7566 compound head,fold
R4581 T7566 T7562 conj fold,mesoderm
R4582 T7567 T7549 punct ", ",for
R4583 T7568 T7569 advmod as,as
R4584 T7569 T7549 cc as,for
R4585 T7570 T7569 advmod well,as
R4586 T7571 T7549 conj for,for
R4587 T7572 T7573 det the,restriction
R4588 T7573 T7571 pobj restriction,for
R4589 T7574 T7573 amod proper,restriction
R4590 T7575 T7573 prep of,restriction
R4591 T7576 T7577 advmod transiently,expressed
R4592 T7577 T7578 amod expressed,genes
R4593 T7578 T7575 pobj genes,of
R4594 T7579 T7580 nmod growth,factor
R4595 T7580 T7578 compound factor,genes
R4596 T7581 T7579 cc and,growth
R4597 T7582 T7579 conj transcription,growth
R4598 T7583 T7534 punct .,indicate
R4599 T7585 T7586 nsubj Knowledge,facilitate
R4600 T7587 T7585 prep of,Knowledge
R4601 T7588 T7589 det the,basis
R4602 T7589 T7587 pobj basis,of
R4603 T7590 T7589 amod molecular,basis
R4604 T7591 T7589 prep of,basis
R4605 T7592 T7593 det these,changes
R4606 T7593 T7591 pobj changes,of
R4607 T7594 T7589 prep in,basis
R4608 T7595 T7596 npadvmod huntingtin,deficient
R4609 T7596 T7597 amod deficient,embryos
R4610 T7597 T7594 pobj embryos,in
R4611 T7598 T7586 aux should,facilitate
R4612 T7599 T7600 det the,identification
R4613 T7600 T7586 dobj identification,facilitate
R4614 T7601 T7600 prep of,identification
R4615 T7602 T7603 det the,pathways
R4616 T7603 T7601 pobj pathways,of
R4617 T7604 T7603 amod cellular,pathways
R4618 T7605 T7606 dep that,are
R4619 T7606 T7603 relcl are,pathways
R4620 T7607 T7606 acomp dependent,are
R4621 T7608 T7607 prep on,dependent
R4622 T7609 T7610 compound huntingtin,activities
R4623 T7610 T7608 pobj activities,on
R4624 T7611 T7586 punct .,facilitate
R4625 T7613 T7614 nsubj These,be
R4626 T7615 T7614 aux will,be
R4627 T7616 T7614 acomp important,be
R4628 T7617 T7616 prep for,important
R4629 T7618 T7617 pcomp implicating,for
R4630 T7619 T7618 dobj candidates,implicating
R4631 T7620 T7621 aux to,assessed
R4632 T7621 T7619 advcl assessed,candidates
R4633 T7622 T7621 auxpass be,assessed
R4634 T7623 T7618 prep in,implicating
R4635 T7624 T7625 det the,signals
R4636 T7625 T7623 pobj signals,in
R4637 T7626 T7625 amod extraembryonic,signals
R4638 T7627 T7628 dep that,determine
R4639 T7628 T7625 relcl determine,signals
R4640 T7629 T7630 amod anterior,streak
R4641 T7630 T7631 compound streak,progression
R4642 T7631 T7628 dobj progression,determine
R4643 T7632 T7628 prep in,determine
R4644 T7633 T7634 det the,embryo
R4645 T7634 T7632 pobj embryo,in
R4646 T7635 T7634 amod developing,embryo
R4647 T7636 T7632 cc and,in
R4648 T7637 T7632 conj in,in
R4649 T7638 T7637 pcomp delineating,in
R4650 T7639 T7640 det the,activity
R4651 T7640 T7638 dobj activity,delineating
R4652 T7641 T7640 amod dominant,activity
R4653 T7642 T7640 prep of,activity
R4654 T7643 T7644 det the,tract
R4655 T7644 T7642 pobj tract,of
R4656 T7645 T7644 compound polyglutamine,tract
R4657 T7646 T7640 prep in,activity
R4658 T7647 T7646 pobj huntingtin,in
R4659 T7648 T7649 dep that,determines
R4660 T7649 T7640 relcl determines,activity
R4661 T7650 T7651 det the,specificity
R4662 T7651 T7649 dobj specificity,determines
R4663 T7652 T7651 amod striatal,specificity
R4664 T7653 T7651 prep of,specificity
R4665 T7654 T7653 pobj HD,of
R4666 T7655 T7614 punct .,be

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7501 38-48 PR_EXT:000008840 denotes huntingtin
T7502 72-82 GO_PATO_EXT:biological_patterning_process_or_quality denotes patterning
T7503 90-98 UBERON:0002532 denotes epiblast
T7504 112-125 GO:0009790 denotes embryogenesis
T7505 147-153 UBERON:0004341 denotes streak
T7506 147-153 _FRAGMENT denotes streak
T7507 163-172 GO:0090009 denotes formation
T7508 158-162 UBERON:0003062 denotes node
T7509 174-190 UBERON:0004341 denotes primitive streak
T7510 204-221 UBERON:0003077 denotes paraxial mesoderm
T7511 204-221 _FRAGMENT denotes paraxial mesoderm
T7512 236-245 GO:0048339 denotes formation
T7513 226-235 UBERON:0009746 denotes head fold
T7514 300-309 GO:0010467 denotes expressed
T7515 310-316 GO_EXT:biological_growth_entity_or_process denotes growth
T7516 310-316 _FRAGMENT denotes growth
T7517 335-341 GO_EXT:0008083 denotes factor
T7518 321-334 GO_EXT:transcription denotes transcription
T7519 321-341 GO_EXT:transcription_factor denotes transcription factor
T7520 342-347 SO_EXT:0000704 denotes genes
T7521 366-375 CHEBI_EXT:polyatomic_entity_or_group denotes molecular
T7522 402-412 PR_EXT:000008840 denotes huntingtin
T7523 423-430 UBERON:0000922 denotes embryos
T7524 475-483 CL_GO_EXT:cell denotes cellular
T7525 515-525 PR_EXT:000008840 denotes huntingtin
T7526 616-625 UBERON:0000922 denotes embryonic
T7527 658-664 UBERON:0004341 denotes streak
T7528 695-701 UBERON:0000922 denotes embryo
T7529 754-763 CHEBI_SO_EXT:glutamine denotes glutamine
T7530 773-783 PR_EXT:000008840 denotes huntingtin
T7531 804-812 UBERON:0002435 denotes striatal
R4545 T7507 T7506 _lexicallyChainedTo formation,streak
R4546 T7512 T7511 _lexicallyChainedTo formation,paraxial mesoderm
R4547 T7517 T7516 _lexicallyChainedTo factor,growth

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7480 90-98 UBERON:0002532 denotes epiblast
T7481 112-125 GO:0009790 denotes embryogenesis
T7482 147-153 UBERON:0004341 denotes streak
T7483 147-153 _FRAGMENT denotes streak
T7484 163-172 GO:0090009 denotes formation
T7485 158-162 UBERON:0003062 denotes node
T7486 174-190 UBERON:0004341 denotes primitive streak
T7487 204-221 UBERON:0003077 denotes paraxial mesoderm
T7488 204-221 _FRAGMENT denotes paraxial mesoderm
T7489 236-245 GO:0048339 denotes formation
T7490 226-235 UBERON:0009746 denotes head fold
T7491 300-309 GO:0010467 denotes expressed
T7492 342-347 SO:0000704 denotes genes
T7493 402-412 PR:000008840 denotes huntingtin
T7494 423-430 UBERON:0000922 denotes embryos
T7495 515-525 PR:000008840 denotes huntingtin
T7496 616-625 UBERON:0000922 denotes embryonic
T7497 658-664 UBERON:0004341 denotes streak
T7498 695-701 UBERON:0000922 denotes embryo
T7499 773-783 PR:000008840 denotes huntingtin
T7500 804-812 UBERON:0002435 denotes striatal
T7479 38-48 PR:000008840 denotes huntingtin
R4543 T7484 T7483 _lexicallyChainedTo formation,streak
R4544 T7489 T7488 _lexicallyChainedTo formation,paraxial mesoderm