PMC:1208873 / 31353-32184
Annnotations
craft-sa-dev
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7532 | 11-14 | PRP$ | denotes | Our |
T7533 | 15-23 | NNS | denotes | findings |
T7534 | 24-32 | VBP | denotes | indicate |
T7535 | 33-37 | IN | denotes | that |
T7536 | 52-60 | VBN | denotes | required |
T7537 | 38-48 | NN | denotes | huntingtin |
T7538 | 49-51 | VBZ | denotes | is |
T7539 | 61-64 | IN | denotes | for |
T7540 | 65-71 | JJ | denotes | proper |
T7541 | 72-82 | NN | denotes | patterning |
T7542 | 83-85 | IN | denotes | of |
T7543 | 86-89 | DT | denotes | the |
T7544 | 90-98 | NN | denotes | epiblast |
T7545 | 99-105 | IN | denotes | during |
T7546 | 106-111 | JJ | denotes | early |
T7547 | 112-125 | NN | denotes | embryogenesis |
T7548 | 125-127 | , | denotes | , |
T7549 | 127-130 | IN | denotes | for |
T7550 | 131-137 | JJ | denotes | proper |
T7551 | 163-172 | NN | denotes | formation |
T7552 | 138-146 | JJ | denotes | anterior |
T7553 | 147-153 | NN | denotes | streak |
T7554 | 154-157 | CC | denotes | and |
T7555 | 158-162 | NN | denotes | node |
T7556 | 172-174 | , | denotes | , |
T7557 | 174-183 | JJ | denotes | primitive |
T7558 | 184-190 | NN | denotes | streak |
T7559 | 191-202 | NN | denotes | progression |
T7560 | 202-204 | , | denotes | , |
T7561 | 204-212 | JJ | denotes | paraxial |
T7562 | 213-221 | NN | denotes | mesoderm |
T7563 | 236-245 | NN | denotes | formation |
T7564 | 222-225 | CC | denotes | and |
T7565 | 226-230 | NN | denotes | head |
T7566 | 231-235 | NN | denotes | fold |
T7567 | 245-247 | , | denotes | , |
T7568 | 247-249 | RB | denotes | as |
T7569 | 255-257 | IN | denotes | as |
T7570 | 250-254 | RB | denotes | well |
T7571 | 258-261 | IN | denotes | for |
T7572 | 262-265 | DT | denotes | the |
T7573 | 273-284 | NN | denotes | restriction |
T7574 | 266-272 | JJ | denotes | proper |
T7575 | 285-287 | IN | denotes | of |
T7576 | 288-299 | RB | denotes | transiently |
T7577 | 300-309 | VBN | denotes | expressed |
T7578 | 342-347 | NNS | denotes | genes |
T7579 | 310-316 | NN | denotes | growth |
T7580 | 335-341 | NN | denotes | factor |
T7581 | 317-320 | CC | denotes | and |
T7582 | 321-334 | NN | denotes | transcription |
T7583 | 347-348 | . | denotes | . |
T7584 | 348-537 | sentence | denotes | Knowledge of the molecular basis of these changes in huntingtin deficient embryos should facilitate the identification of the cellular pathways that are dependent on huntingtin activities. |
T7585 | 349-358 | NN | denotes | Knowledge |
T7586 | 438-448 | VB | denotes | facilitate |
T7587 | 359-361 | IN | denotes | of |
T7588 | 362-365 | DT | denotes | the |
T7589 | 376-381 | NN | denotes | basis |
T7590 | 366-375 | JJ | denotes | molecular |
T7591 | 382-384 | IN | denotes | of |
T7592 | 385-390 | DT | denotes | these |
T7593 | 391-398 | NNS | denotes | changes |
T7594 | 399-401 | IN | denotes | in |
T7595 | 402-412 | NN | denotes | huntingtin |
T7596 | 413-422 | JJ | denotes | deficient |
T7597 | 423-430 | NNS | denotes | embryos |
T7598 | 431-437 | MD | denotes | should |
T7599 | 449-452 | DT | denotes | the |
T7600 | 453-467 | NN | denotes | identification |
T7601 | 468-470 | IN | denotes | of |
T7602 | 471-474 | DT | denotes | the |
T7603 | 484-492 | NNS | denotes | pathways |
T7604 | 475-483 | JJ | denotes | cellular |
T7605 | 493-497 | WDT | denotes | that |
T7606 | 498-501 | VBP | denotes | are |
T7607 | 502-511 | JJ | denotes | dependent |
T7608 | 512-514 | IN | denotes | on |
T7609 | 515-525 | NN | denotes | huntingtin |
T7610 | 526-536 | NNS | denotes | activities |
T7611 | 536-537 | . | denotes | . |
T7612 | 537-831 | sentence | denotes | These will be important for implicating candidates to be assessed in the extraembryonic signals that determine anterior streak progression in the developing embryo and in delineating the dominant activity of the polyglutamine tract in huntingtin that determines the striatal specificity of HD. |
T7613 | 538-543 | DT | denotes | These |
T7614 | 549-551 | VB | denotes | be |
T7615 | 544-548 | MD | denotes | will |
T7616 | 552-561 | JJ | denotes | important |
T7617 | 562-565 | IN | denotes | for |
T7618 | 566-577 | VBG | denotes | implicating |
T7619 | 578-588 | NNS | denotes | candidates |
T7620 | 589-591 | TO | denotes | to |
T7621 | 595-603 | VBN | denotes | assessed |
T7622 | 592-594 | VB | denotes | be |
T7623 | 604-606 | IN | denotes | in |
T7624 | 607-610 | DT | denotes | the |
T7625 | 626-633 | NNS | denotes | signals |
T7626 | 611-625 | JJ | denotes | extraembryonic |
T7627 | 634-638 | WDT | denotes | that |
T7628 | 639-648 | VBP | denotes | determine |
T7629 | 649-657 | JJ | denotes | anterior |
T7630 | 658-664 | NN | denotes | streak |
T7631 | 665-676 | NN | denotes | progression |
T7632 | 677-679 | IN | denotes | in |
T7633 | 680-683 | DT | denotes | the |
T7634 | 695-701 | NN | denotes | embryo |
T7635 | 684-694 | VBG | denotes | developing |
T7636 | 702-705 | CC | denotes | and |
T7637 | 706-708 | IN | denotes | in |
T7638 | 709-720 | VBG | denotes | delineating |
T7639 | 721-724 | DT | denotes | the |
T7640 | 734-742 | NN | denotes | activity |
T7641 | 725-733 | JJ | denotes | dominant |
T7642 | 743-745 | IN | denotes | of |
T7643 | 746-749 | DT | denotes | the |
T7644 | 764-769 | NN | denotes | tract |
T7645 | 750-763 | NN | denotes | polyglutamine |
T7646 | 770-772 | IN | denotes | in |
T7647 | 773-783 | NN | denotes | huntingtin |
T7648 | 784-788 | WDT | denotes | that |
T7649 | 789-799 | VBZ | denotes | determines |
T7650 | 800-803 | DT | denotes | the |
T7651 | 813-824 | NN | denotes | specificity |
T7652 | 804-812 | JJ | denotes | striatal |
T7653 | 825-827 | IN | denotes | of |
T7654 | 828-830 | NN | denotes | HD |
T7655 | 830-831 | . | denotes | . |
R4548 | T7532 | T7533 | poss | Our,findings |
R4549 | T7533 | T7534 | nsubj | findings,indicate |
R4550 | T7535 | T7536 | mark | that,required |
R4551 | T7536 | T7534 | ccomp | required,indicate |
R4552 | T7537 | T7536 | nsubjpass | huntingtin,required |
R4553 | T7538 | T7536 | auxpass | is,required |
R4554 | T7539 | T7536 | prep | for,required |
R4555 | T7540 | T7541 | amod | proper,patterning |
R4556 | T7541 | T7539 | pobj | patterning,for |
R4557 | T7542 | T7541 | prep | of,patterning |
R4558 | T7543 | T7544 | det | the,epiblast |
R4559 | T7544 | T7542 | pobj | epiblast,of |
R4560 | T7545 | T7541 | prep | during,patterning |
R4561 | T7546 | T7547 | amod | early,embryogenesis |
R4562 | T7547 | T7545 | pobj | embryogenesis,during |
R4563 | T7548 | T7539 | punct | ", ",for |
R4564 | T7549 | T7539 | conj | for,for |
R4565 | T7550 | T7551 | amod | proper,formation |
R4566 | T7551 | T7549 | pobj | formation,for |
R4567 | T7552 | T7553 | amod | anterior,streak |
R4568 | T7553 | T7551 | nmod | streak,formation |
R4569 | T7554 | T7553 | cc | and,streak |
R4570 | T7555 | T7553 | conj | node,streak |
R4571 | T7556 | T7551 | punct | ", ",formation |
R4572 | T7557 | T7558 | amod | primitive,streak |
R4573 | T7558 | T7559 | compound | streak,progression |
R4574 | T7559 | T7551 | appos | progression,formation |
R4575 | T7560 | T7551 | punct | ", ",formation |
R4576 | T7561 | T7562 | amod | paraxial,mesoderm |
R4577 | T7562 | T7563 | nmod | mesoderm,formation |
R4578 | T7563 | T7551 | appos | formation,formation |
R4579 | T7564 | T7562 | cc | and,mesoderm |
R4580 | T7565 | T7566 | compound | head,fold |
R4581 | T7566 | T7562 | conj | fold,mesoderm |
R4582 | T7567 | T7549 | punct | ", ",for |
R4583 | T7568 | T7569 | advmod | as,as |
R4584 | T7569 | T7549 | cc | as,for |
R4585 | T7570 | T7569 | advmod | well,as |
R4586 | T7571 | T7549 | conj | for,for |
R4587 | T7572 | T7573 | det | the,restriction |
R4588 | T7573 | T7571 | pobj | restriction,for |
R4589 | T7574 | T7573 | amod | proper,restriction |
R4590 | T7575 | T7573 | prep | of,restriction |
R4591 | T7576 | T7577 | advmod | transiently,expressed |
R4592 | T7577 | T7578 | amod | expressed,genes |
R4593 | T7578 | T7575 | pobj | genes,of |
R4594 | T7579 | T7580 | nmod | growth,factor |
R4595 | T7580 | T7578 | compound | factor,genes |
R4596 | T7581 | T7579 | cc | and,growth |
R4597 | T7582 | T7579 | conj | transcription,growth |
R4598 | T7583 | T7534 | punct | .,indicate |
R4599 | T7585 | T7586 | nsubj | Knowledge,facilitate |
R4600 | T7587 | T7585 | prep | of,Knowledge |
R4601 | T7588 | T7589 | det | the,basis |
R4602 | T7589 | T7587 | pobj | basis,of |
R4603 | T7590 | T7589 | amod | molecular,basis |
R4604 | T7591 | T7589 | prep | of,basis |
R4605 | T7592 | T7593 | det | these,changes |
R4606 | T7593 | T7591 | pobj | changes,of |
R4607 | T7594 | T7589 | prep | in,basis |
R4608 | T7595 | T7596 | npadvmod | huntingtin,deficient |
R4609 | T7596 | T7597 | amod | deficient,embryos |
R4610 | T7597 | T7594 | pobj | embryos,in |
R4611 | T7598 | T7586 | aux | should,facilitate |
R4612 | T7599 | T7600 | det | the,identification |
R4613 | T7600 | T7586 | dobj | identification,facilitate |
R4614 | T7601 | T7600 | prep | of,identification |
R4615 | T7602 | T7603 | det | the,pathways |
R4616 | T7603 | T7601 | pobj | pathways,of |
R4617 | T7604 | T7603 | amod | cellular,pathways |
R4618 | T7605 | T7606 | dep | that,are |
R4619 | T7606 | T7603 | relcl | are,pathways |
R4620 | T7607 | T7606 | acomp | dependent,are |
R4621 | T7608 | T7607 | prep | on,dependent |
R4622 | T7609 | T7610 | compound | huntingtin,activities |
R4623 | T7610 | T7608 | pobj | activities,on |
R4624 | T7611 | T7586 | punct | .,facilitate |
R4625 | T7613 | T7614 | nsubj | These,be |
R4626 | T7615 | T7614 | aux | will,be |
R4627 | T7616 | T7614 | acomp | important,be |
R4628 | T7617 | T7616 | prep | for,important |
R4629 | T7618 | T7617 | pcomp | implicating,for |
R4630 | T7619 | T7618 | dobj | candidates,implicating |
R4631 | T7620 | T7621 | aux | to,assessed |
R4632 | T7621 | T7619 | advcl | assessed,candidates |
R4633 | T7622 | T7621 | auxpass | be,assessed |
R4634 | T7623 | T7618 | prep | in,implicating |
R4635 | T7624 | T7625 | det | the,signals |
R4636 | T7625 | T7623 | pobj | signals,in |
R4637 | T7626 | T7625 | amod | extraembryonic,signals |
R4638 | T7627 | T7628 | dep | that,determine |
R4639 | T7628 | T7625 | relcl | determine,signals |
R4640 | T7629 | T7630 | amod | anterior,streak |
R4641 | T7630 | T7631 | compound | streak,progression |
R4642 | T7631 | T7628 | dobj | progression,determine |
R4643 | T7632 | T7628 | prep | in,determine |
R4644 | T7633 | T7634 | det | the,embryo |
R4645 | T7634 | T7632 | pobj | embryo,in |
R4646 | T7635 | T7634 | amod | developing,embryo |
R4647 | T7636 | T7632 | cc | and,in |
R4648 | T7637 | T7632 | conj | in,in |
R4649 | T7638 | T7637 | pcomp | delineating,in |
R4650 | T7639 | T7640 | det | the,activity |
R4651 | T7640 | T7638 | dobj | activity,delineating |
R4652 | T7641 | T7640 | amod | dominant,activity |
R4653 | T7642 | T7640 | prep | of,activity |
R4654 | T7643 | T7644 | det | the,tract |
R4655 | T7644 | T7642 | pobj | tract,of |
R4656 | T7645 | T7644 | compound | polyglutamine,tract |
R4657 | T7646 | T7640 | prep | in,activity |
R4658 | T7647 | T7646 | pobj | huntingtin,in |
R4659 | T7648 | T7649 | dep | that,determines |
R4660 | T7649 | T7640 | relcl | determines,activity |
R4661 | T7650 | T7651 | det | the,specificity |
R4662 | T7651 | T7649 | dobj | specificity,determines |
R4663 | T7652 | T7651 | amod | striatal,specificity |
R4664 | T7653 | T7651 | prep | of,specificity |
R4665 | T7654 | T7653 | pobj | HD,of |
R4666 | T7655 | T7614 | punct | .,be |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7501 | 38-48 | PR_EXT:000008840 | denotes | huntingtin |
T7502 | 72-82 | GO_PATO_EXT:biological_patterning_process_or_quality | denotes | patterning |
T7503 | 90-98 | UBERON:0002532 | denotes | epiblast |
T7504 | 112-125 | GO:0009790 | denotes | embryogenesis |
T7505 | 147-153 | UBERON:0004341 | denotes | streak |
T7506 | 147-153 | _FRAGMENT | denotes | streak |
T7507 | 163-172 | GO:0090009 | denotes | formation |
T7508 | 158-162 | UBERON:0003062 | denotes | node |
T7509 | 174-190 | UBERON:0004341 | denotes | primitive streak |
T7510 | 204-221 | UBERON:0003077 | denotes | paraxial mesoderm |
T7511 | 204-221 | _FRAGMENT | denotes | paraxial mesoderm |
T7512 | 236-245 | GO:0048339 | denotes | formation |
T7513 | 226-235 | UBERON:0009746 | denotes | head fold |
T7514 | 300-309 | GO:0010467 | denotes | expressed |
T7515 | 310-316 | GO_EXT:biological_growth_entity_or_process | denotes | growth |
T7516 | 310-316 | _FRAGMENT | denotes | growth |
T7517 | 335-341 | GO_EXT:0008083 | denotes | factor |
T7518 | 321-334 | GO_EXT:transcription | denotes | transcription |
T7519 | 321-341 | GO_EXT:transcription_factor | denotes | transcription factor |
T7520 | 342-347 | SO_EXT:0000704 | denotes | genes |
T7521 | 366-375 | CHEBI_EXT:polyatomic_entity_or_group | denotes | molecular |
T7522 | 402-412 | PR_EXT:000008840 | denotes | huntingtin |
T7523 | 423-430 | UBERON:0000922 | denotes | embryos |
T7524 | 475-483 | CL_GO_EXT:cell | denotes | cellular |
T7525 | 515-525 | PR_EXT:000008840 | denotes | huntingtin |
T7526 | 616-625 | UBERON:0000922 | denotes | embryonic |
T7527 | 658-664 | UBERON:0004341 | denotes | streak |
T7528 | 695-701 | UBERON:0000922 | denotes | embryo |
T7529 | 754-763 | CHEBI_SO_EXT:glutamine | denotes | glutamine |
T7530 | 773-783 | PR_EXT:000008840 | denotes | huntingtin |
T7531 | 804-812 | UBERON:0002435 | denotes | striatal |
R4545 | T7507 | T7506 | _lexicallyChainedTo | formation,streak |
R4546 | T7512 | T7511 | _lexicallyChainedTo | formation,paraxial mesoderm |
R4547 | T7517 | T7516 | _lexicallyChainedTo | factor,growth |
craft-ca-core-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7480 | 90-98 | UBERON:0002532 | denotes | epiblast |
T7481 | 112-125 | GO:0009790 | denotes | embryogenesis |
T7482 | 147-153 | UBERON:0004341 | denotes | streak |
T7483 | 147-153 | _FRAGMENT | denotes | streak |
T7484 | 163-172 | GO:0090009 | denotes | formation |
T7485 | 158-162 | UBERON:0003062 | denotes | node |
T7486 | 174-190 | UBERON:0004341 | denotes | primitive streak |
T7487 | 204-221 | UBERON:0003077 | denotes | paraxial mesoderm |
T7488 | 204-221 | _FRAGMENT | denotes | paraxial mesoderm |
T7489 | 236-245 | GO:0048339 | denotes | formation |
T7490 | 226-235 | UBERON:0009746 | denotes | head fold |
T7491 | 300-309 | GO:0010467 | denotes | expressed |
T7492 | 342-347 | SO:0000704 | denotes | genes |
T7493 | 402-412 | PR:000008840 | denotes | huntingtin |
T7494 | 423-430 | UBERON:0000922 | denotes | embryos |
T7495 | 515-525 | PR:000008840 | denotes | huntingtin |
T7496 | 616-625 | UBERON:0000922 | denotes | embryonic |
T7497 | 658-664 | UBERON:0004341 | denotes | streak |
T7498 | 695-701 | UBERON:0000922 | denotes | embryo |
T7499 | 773-783 | PR:000008840 | denotes | huntingtin |
T7500 | 804-812 | UBERON:0002435 | denotes | striatal |
T7479 | 38-48 | PR:000008840 | denotes | huntingtin |
R4543 | T7484 | T7483 | _lexicallyChainedTo | formation,streak |
R4544 | T7489 | T7488 | _lexicallyChainedTo | formation,paraxial mesoderm |