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PMC:1189074 / 7499-8934 JSONTXT

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Id Subject Object Predicate Lexical cue
T1606 0-3 NN denotes RNA
T1607 4-12 NN denotes Analysis
T1608 12-208 sentence denotes RT-PCR amplification from exon 7 to 11 from total heart RNA amplified the expected 600-base pair (bp) fragment in MCAD+/+ and MCAD+/− mice, and a 1.5-kb fragment in MCAD−/− mice (data not shown).
T1609 13-15 NN denotes RT
T1610 16-19 NN denotes PCR
T1611 15-16 HYPH denotes -
T1612 20-33 NN denotes amplification
T1613 73-82 VBD denotes amplified
T1614 34-38 IN denotes from
T1615 39-43 NN denotes exon
T1616 44-45 CD denotes 7
T1617 46-48 IN denotes to
T1618 49-51 CD denotes 11
T1619 52-56 IN denotes from
T1620 57-62 JJ denotes total
T1621 69-72 NN denotes RNA
T1622 63-68 NN denotes heart
T1623 83-86 DT denotes the
T1624 115-123 NN denotes fragment
T1625 87-95 VBN denotes expected
T1626 96-99 CD denotes 600
T1627 105-109 NN denotes pair
T1628 99-100 HYPH denotes -
T1629 100-104 NN denotes base
T1630 110-111 -LRB- denotes (
T1631 111-113 NN denotes bp
T1632 113-114 -RRB- denotes )
T1633 124-126 IN denotes in
T1634 127-131 NN denotes MCAD
T1635 147-151 NNS denotes mice
T1636 131-132 SYM denotes +
T1637 132-133 HYPH denotes /
T1638 133-134 SYM denotes +
T1639 135-138 CC denotes and
T1640 139-143 NN denotes MCAD
T1641 143-144 SYM denotes +
T1642 144-145 HYPH denotes /
T1643 145-146 SYM denotes −
T1644 151-153 , denotes ,
T1645 153-156 CC denotes and
T1646 157-158 DT denotes a
T1647 166-174 NN denotes fragment
T1648 159-162 CD denotes 1.5
T1649 163-165 NN denotes kb
T1650 162-163 HYPH denotes -
T1651 175-177 IN denotes in
T1652 178-182 NN denotes MCAD
T1653 186-190 NNS denotes mice
T1654 182-183 SYM denotes −
T1655 183-184 HYPH denotes /
T1656 184-185 SYM denotes −
T1657 191-192 -LRB- denotes (
T1658 201-206 VBN denotes shown
T1659 192-196 NNS denotes data
T1660 197-200 RB denotes not
T1661 206-207 -RRB- denotes )
T1662 207-208 . denotes .
T1663 208-378 sentence denotes Sequence analysis of the 1.5-kb fragment revealed that the amplified fragment consisted of exon 7 to exon 10 with 280 bp of pGEM plasmid sequence followed by exons 8–11.
T1664 209-217 NN denotes Sequence
T1665 218-226 NN denotes analysis
T1666 250-258 VBD denotes revealed
T1667 227-229 IN denotes of
T1668 230-233 DT denotes the
T1669 241-249 NN denotes fragment
T1670 234-237 CD denotes 1.5
T1671 238-240 NN denotes kb
T1672 237-238 HYPH denotes -
T1673 259-263 IN denotes that
T1674 287-296 VBD denotes consisted
T1675 264-267 DT denotes the
T1676 278-286 NN denotes fragment
T1677 268-277 VBN denotes amplified
T1678 297-299 IN denotes of
T1679 300-304 NN denotes exon
T1680 305-306 CD denotes 7
T1681 307-309 IN denotes to
T1682 310-314 NN denotes exon
T1683 315-317 CD denotes 10
T1684 318-322 IN denotes with
T1685 323-326 CD denotes 280
T1686 327-329 NN denotes bp
T1687 330-332 IN denotes of
T1688 333-337 NN denotes pGEM
T1689 346-354 NN denotes sequence
T1690 338-345 NN denotes plasmid
T1691 355-363 VBN denotes followed
T1692 364-366 IN denotes by
T1693 367-372 NNS denotes exons
T1694 373-374 CD denotes 8
T1695 374-375 SYM denotes –
T1696 375-377 CD denotes 11
T1697 377-378 . denotes .
T1698 378-481 sentence denotes Some of the plasmid sequences, along with the pPGKNEOpA sequence, were deleted from this spliced mRNA.
T1699 379-383 DT denotes Some
T1700 450-457 VBN denotes deleted
T1701 384-386 IN denotes of
T1702 387-390 DT denotes the
T1703 399-408 NNS denotes sequences
T1704 391-398 NN denotes plasmid
T1705 408-410 , denotes ,
T1706 410-415 IN denotes along
T1707 416-420 IN denotes with
T1708 421-424 DT denotes the
T1709 435-443 NN denotes sequence
T1710 425-434 NN denotes pPGKNEOpA
T1711 443-445 , denotes ,
T1712 445-449 VBD denotes were
T1713 458-462 IN denotes from
T1714 463-467 DT denotes this
T1715 476-480 NN denotes mRNA
T1716 468-475 VBN denotes spliced
T1717 480-481 . denotes .
T1718 481-754 sentence denotes Northern blot analysis revealed Acadm was normally expressed in all tissues analyzed from MCAD+/+ mice with the most robust expression occurring in brown fat, kidney, heart, skeletal muscle, and liver with minimal expression in the brain, white fat, and testes (Figure 2).
T1719 482-490 NNP denotes Northern
T1720 491-495 NN denotes blot
T1721 496-504 NN denotes analysis
T1722 505-513 VBD denotes revealed
T1723 514-519 NN denotes Acadm
T1724 533-542 VBN denotes expressed
T1725 520-523 VBD denotes was
T1726 524-532 RB denotes normally
T1727 543-545 IN denotes in
T1728 546-549 DT denotes all
T1729 550-557 NNS denotes tissues
T1730 558-566 VBN denotes analyzed
T1731 567-571 IN denotes from
T1732 572-576 NN denotes MCAD
T1733 580-584 NNS denotes mice
T1734 576-577 SYM denotes +
T1735 577-578 HYPH denotes /
T1736 578-579 SYM denotes +
T1737 585-589 IN denotes with
T1738 590-593 DT denotes the
T1739 606-616 NN denotes expression
T1740 594-598 RBS denotes most
T1741 599-605 JJ denotes robust
T1742 617-626 VBG denotes occurring
T1743 627-629 IN denotes in
T1744 630-635 JJ denotes brown
T1745 636-639 NN denotes fat
T1746 639-641 , denotes ,
T1747 641-647 NN denotes kidney
T1748 647-649 , denotes ,
T1749 649-654 NN denotes heart
T1750 654-656 , denotes ,
T1751 656-664 JJ denotes skeletal
T1752 665-671 NN denotes muscle
T1753 671-673 , denotes ,
T1754 673-676 CC denotes and
T1755 677-682 NN denotes liver
T1756 683-687 IN denotes with
T1757 688-695 JJ denotes minimal
T1758 696-706 NN denotes expression
T1759 707-709 IN denotes in
T1760 710-713 DT denotes the
T1761 714-719 NN denotes brain
T1762 719-721 , denotes ,
T1763 721-726 JJ denotes white
T1764 727-730 NN denotes fat
T1765 730-732 , denotes ,
T1766 732-735 CC denotes and
T1767 736-742 NNS denotes testes
T1768 743-744 -LRB- denotes (
T1769 744-750 NN denotes Figure
T1770 751-752 CD denotes 2
T1771 752-753 -RRB- denotes )
T1772 753-754 . denotes .
T1773 754-916 sentence denotes Interestingly, although RT-PCR amplified an incorrectly spliced Acadm transcript, no Acadm transcripts were detected by northern blot analysis from MCAD−/− mice.
T1774 755-768 RB denotes Interestingly
T1775 863-871 VBN denotes detected
T1776 768-770 , denotes ,
T1777 770-778 IN denotes although
T1778 786-795 VBD denotes amplified
T1779 779-781 NN denotes RT
T1780 782-785 NN denotes PCR
T1781 781-782 HYPH denotes -
T1782 796-798 DT denotes an
T1783 825-835 NN denotes transcript
T1784 799-810 RB denotes incorrectly
T1785 811-818 VBN denotes spliced
T1786 819-824 NN denotes Acadm
T1787 835-837 , denotes ,
T1788 837-839 DT denotes no
T1789 846-857 NNS denotes transcripts
T1790 840-845 NN denotes Acadm
T1791 858-862 VBD denotes were
T1792 872-874 IN denotes by
T1793 875-883 NNP denotes northern
T1794 884-888 NN denotes blot
T1795 889-897 NN denotes analysis
T1796 898-902 IN denotes from
T1797 903-907 NN denotes MCAD
T1798 911-915 NNS denotes mice
T1799 907-908 SYM denotes −
T1800 908-909 HYPH denotes /
T1801 909-910 SYM denotes −
T1802 915-916 . denotes .
T1803 916-1058 sentence denotes These results strongly suggest that the mutant RNA is unstable and degraded rapidly or, alternatively, undergoes nonsense mediated RNA decay.
T1804 917-922 DT denotes These
T1805 923-930 NNS denotes results
T1806 940-947 VBP denotes suggest
T1807 931-939 RB denotes strongly
T1808 948-952 IN denotes that
T1809 968-970 VBZ denotes is
T1810 953-956 DT denotes the
T1811 964-967 NN denotes RNA
T1812 957-963 NN denotes mutant
T1813 971-979 JJ denotes unstable
T1814 980-983 CC denotes and
T1815 984-992 VBN denotes degraded
T1816 993-1000 RB denotes rapidly
T1817 1001-1003 CC denotes or
T1818 1003-1005 , denotes ,
T1819 1005-1018 RB denotes alternatively
T1820 1020-1029 VBZ denotes undergoes
T1821 1018-1020 , denotes ,
T1822 1030-1038 NN denotes nonsense
T1823 1039-1047 VBN denotes mediated
T1824 1052-1057 NN denotes decay
T1825 1048-1051 NN denotes RNA
T1826 1057-1058 . denotes .
T7455 1069-1077 NNP denotes Northern
T7456 1078-1082 NN denotes Blot
T7457 1083-1091 NN denotes Analysis
T7458 1092-1096 IN denotes from
T7459 1097-1101 NN denotes MCAD
T7460 1133-1137 NNS denotes Mice
T7461 1101-1102 SYM denotes −
T7462 1102-1103 HYPH denotes /
T7463 1103-1104 SYM denotes −
T7464 1105-1106 -LRB- denotes (
T7465 1110-1111 CD denotes 2
T7466 1106-1107 NN denotes n
T7467 1108-1109 SYM denotes =
T7468 1111-1112 -RRB- denotes )
T7469 1113-1116 CC denotes and
T7470 1117-1121 NN denotes MCAD
T7471 1121-1122 SYM denotes +
T7472 1122-1123 HYPH denotes /
T7473 1123-1124 SYM denotes +
T7474 1125-1126 -LRB- denotes (
T7475 1130-1131 CD denotes 2
T7476 1126-1127 NN denotes n
T7477 1128-1129 SYM denotes =
T7478 1131-1132 -RRB- denotes )
T7479 1137-1289 sentence denotes Acadm message was detected from the heart, liver, brown fat, brain, kidney, and muscle (and white fat and testes, data not shown) of only MCAD+/+ mice.
T7480 1138-1143 NN denotes Acadm
T7481 1144-1151 NN denotes message
T7482 1156-1164 VBN denotes detected
T7483 1152-1155 VBD denotes was
T7484 1165-1169 IN denotes from
T7485 1170-1173 DT denotes the
T7486 1174-1179 NN denotes heart
T7487 1179-1181 , denotes ,
T7488 1181-1186 NN denotes liver
T7489 1186-1188 , denotes ,
T7490 1188-1193 JJ denotes brown
T7491 1194-1197 NN denotes fat
T7492 1197-1199 , denotes ,
T7493 1199-1204 NN denotes brain
T7494 1204-1206 , denotes ,
T7495 1206-1212 NN denotes kidney
T7496 1212-1214 , denotes ,
T7497 1214-1217 CC denotes and
T7498 1218-1224 NN denotes muscle
T7499 1225-1226 -LRB- denotes (
T7500 1226-1229 CC denotes and
T7501 1230-1235 JJ denotes white
T7502 1236-1239 NN denotes fat
T7503 1240-1243 CC denotes and
T7504 1244-1250 NNS denotes testes
T7505 1250-1252 , denotes ,
T7506 1261-1266 VBN denotes shown
T7507 1252-1256 NNS denotes data
T7508 1257-1260 RB denotes not
T7509 1266-1267 -RRB- denotes )
T7510 1268-1270 IN denotes of
T7511 1271-1275 JJ denotes only
T7512 1284-1288 NNS denotes mice
T7513 1276-1280 NN denotes MCAD
T7514 1280-1281 SYM denotes +
T7515 1281-1282 HYPH denotes /
T7516 1282-1283 SYM denotes +
T7517 1288-1289 . denotes .
T7518 1289-1371 sentence denotes Most robust expression occurred in brown fat, kidney, heart, and skeletal muscle.
T7519 1290-1294 RBS denotes Most
T7520 1302-1312 NN denotes expression
T7521 1295-1301 JJ denotes robust
T7522 1313-1321 VBD denotes occurred
T7523 1322-1324 IN denotes in
T7524 1325-1330 JJ denotes brown
T7525 1331-1334 NN denotes fat
T7526 1334-1336 , denotes ,
T7527 1336-1342 NN denotes kidney
T7528 1342-1344 , denotes ,
T7529 1344-1349 NN denotes heart
T7530 1349-1351 , denotes ,
T7531 1351-1354 CC denotes and
T7532 1355-1363 JJ denotes skeletal
T7533 1364-1370 NN denotes muscle
T7534 1370-1371 . denotes .
T7535 1371-1435 sentence denotes MCAD−/− mice had no detectable message in all tissues examined.
T7536 1372-1376 NN denotes MCAD
T7537 1380-1384 NNS denotes mice
T7538 1376-1377 SYM denotes −
T7539 1377-1378 HYPH denotes /
T7540 1378-1379 SYM denotes −
T7541 1385-1388 VBD denotes had
T7542 1389-1391 DT denotes no
T7543 1403-1410 NN denotes message
T7544 1392-1402 JJ denotes detectable
T7545 1411-1413 IN denotes in
T7546 1414-1417 DT denotes all
T7547 1418-1425 NNS denotes tissues
T7548 1426-1434 VBN denotes examined
T7549 1434-1435 . denotes .
R1025 T1606 T1607 compound RNA,Analysis
R1026 T1609 T1610 compound RT,PCR
R1027 T1610 T1612 compound PCR,amplification
R1028 T1611 T1610 punct -,PCR
R1029 T1612 T1613 nsubj amplification,amplified
R1030 T1614 T1612 prep from,amplification
R1031 T1615 T1616 nmod exon,7
R1032 T1616 T1614 pobj 7,from
R1033 T1617 T1616 prep to,7
R1034 T1618 T1617 pobj 11,to
R1035 T1619 T1612 prep from,amplification
R1036 T1620 T1621 amod total,RNA
R1037 T1621 T1619 pobj RNA,from
R1038 T1622 T1621 compound heart,RNA
R1039 T1623 T1624 det the,fragment
R1040 T1624 T1613 dobj fragment,amplified
R1041 T1625 T1624 amod expected,fragment
R1042 T1626 T1627 nummod 600,pair
R1043 T1627 T1624 nmod pair,fragment
R1044 T1628 T1627 punct -,pair
R1045 T1629 T1627 nmod base,pair
R1046 T1630 T1627 punct (,pair
R1047 T1631 T1627 appos bp,pair
R1048 T1632 T1624 punct ),fragment
R1049 T1633 T1624 prep in,fragment
R1050 T1634 T1635 nmod MCAD,mice
R1051 T1635 T1633 pobj mice,in
R1052 T1636 T1634 punct +,MCAD
R1053 T1637 T1634 punct /,MCAD
R1054 T1638 T1634 punct +,MCAD
R1055 T1639 T1634 cc and,MCAD
R1056 T1640 T1634 conj MCAD,MCAD
R1057 T1641 T1640 punct +,MCAD
R1058 T1642 T1640 punct /,MCAD
R1059 T1643 T1640 punct −,MCAD
R1060 T1644 T1624 punct ", ",fragment
R1061 T1645 T1624 cc and,fragment
R1062 T1646 T1647 det a,fragment
R1063 T1647 T1624 conj fragment,fragment
R1064 T1648 T1649 nummod 1.5,kb
R1065 T1649 T1647 compound kb,fragment
R1066 T1650 T1649 punct -,kb
R1067 T1651 T1647 prep in,fragment
R1068 T1652 T1653 nmod MCAD,mice
R1069 T1653 T1651 pobj mice,in
R1070 T1654 T1652 punct −,MCAD
R1071 T1655 T1652 punct /,MCAD
R1072 T1656 T1652 punct −,MCAD
R1073 T1657 T1658 punct (,shown
R1074 T1658 T1613 parataxis shown,amplified
R1075 T1659 T1658 nsubj data,shown
R1076 T1660 T1658 neg not,shown
R1077 T1661 T1658 punct ),shown
R1078 T1662 T1613 punct .,amplified
R1079 T1664 T1665 compound Sequence,analysis
R1080 T1665 T1666 nsubj analysis,revealed
R1081 T1667 T1665 prep of,analysis
R1082 T1668 T1669 det the,fragment
R1083 T1669 T1667 pobj fragment,of
R1084 T1670 T1671 nummod 1.5,kb
R1085 T1671 T1669 compound kb,fragment
R1086 T1672 T1671 punct -,kb
R1087 T1673 T1674 mark that,consisted
R1088 T1674 T1666 ccomp consisted,revealed
R1089 T1675 T1676 det the,fragment
R1090 T1676 T1674 nsubj fragment,consisted
R1091 T1677 T1676 amod amplified,fragment
R1092 T1678 T1674 prep of,consisted
R1093 T1679 T1678 pobj exon,of
R1094 T1680 T1679 nummod 7,exon
R1095 T1681 T1679 prep to,exon
R1096 T1682 T1681 pobj exon,to
R1097 T1683 T1682 nummod 10,exon
R1098 T1684 T1674 prep with,consisted
R1099 T1685 T1686 nummod 280,bp
R1100 T1686 T1684 pobj bp,with
R1101 T1687 T1686 prep of,bp
R1102 T1688 T1689 compound pGEM,sequence
R1103 T1689 T1687 pobj sequence,of
R1104 T1690 T1689 compound plasmid,sequence
R1105 T1691 T1689 acl followed,sequence
R1106 T1692 T1691 agent by,followed
R1107 T1693 T1694 nmod exons,8
R1108 T1694 T1692 pobj 8,by
R1109 T1695 T1696 punct –,11
R1110 T1696 T1694 prep 11,8
R1111 T1697 T1666 punct .,revealed
R1112 T1699 T1700 nsubjpass Some,deleted
R1113 T1701 T1699 prep of,Some
R1114 T1702 T1703 det the,sequences
R1115 T1703 T1701 pobj sequences,of
R1116 T1704 T1703 compound plasmid,sequences
R1117 T1705 T1699 punct ", ",Some
R1118 T1706 T1699 cc along,Some
R1119 T1707 T1706 dep with,along
R1120 T1708 T1709 det the,sequence
R1121 T1709 T1699 conj sequence,Some
R1122 T1710 T1709 compound pPGKNEOpA,sequence
R1123 T1711 T1700 punct ", ",deleted
R1124 T1712 T1700 auxpass were,deleted
R1125 T1713 T1700 prep from,deleted
R1126 T1714 T1715 det this,mRNA
R1127 T1715 T1713 pobj mRNA,from
R1128 T1716 T1715 amod spliced,mRNA
R1129 T1717 T1700 punct .,deleted
R1130 T1719 T1720 compound Northern,blot
R1131 T1720 T1721 compound blot,analysis
R1132 T1721 T1722 nsubj analysis,revealed
R1133 T1723 T1724 nsubjpass Acadm,expressed
R1134 T1724 T1722 advcl expressed,revealed
R1135 T1725 T1724 auxpass was,expressed
R1136 T1726 T1724 advmod normally,expressed
R1137 T1727 T1724 prep in,expressed
R1138 T1728 T1729 det all,tissues
R1139 T1729 T1727 pobj tissues,in
R1140 T1730 T1729 acl analyzed,tissues
R1141 T1731 T1729 prep from,tissues
R1142 T1732 T1733 nmod MCAD,mice
R1143 T1733 T1731 pobj mice,from
R1144 T1734 T1732 punct +,MCAD
R1145 T1735 T1732 punct /,MCAD
R1146 T1736 T1732 punct +,MCAD
R1147 T1737 T1724 prep with,expressed
R1148 T1738 T1739 det the,expression
R1149 T1739 T1742 nsubj expression,occurring
R1150 T1740 T1741 advmod most,robust
R1151 T1741 T1739 amod robust,expression
R1152 T1742 T1737 pcomp occurring,with
R1153 T1743 T1742 prep in,occurring
R1154 T1744 T1745 amod brown,fat
R1155 T1745 T1743 pobj fat,in
R1156 T1746 T1745 punct ", ",fat
R1157 T1747 T1745 conj kidney,fat
R1158 T1748 T1747 punct ", ",kidney
R1159 T1749 T1747 conj heart,kidney
R1160 T1750 T1749 punct ", ",heart
R1161 T1751 T1752 amod skeletal,muscle
R1162 T1752 T1749 conj muscle,heart
R1163 T1753 T1752 punct ", ",muscle
R1164 T1754 T1752 cc and,muscle
R1165 T1755 T1752 conj liver,muscle
R1166 T1756 T1724 prep with,expressed
R1167 T1757 T1758 amod minimal,expression
R1168 T1758 T1756 pobj expression,with
R1169 T1759 T1758 prep in,expression
R1170 T1760 T1761 det the,brain
R1171 T1761 T1759 pobj brain,in
R1172 T1762 T1761 punct ", ",brain
R1173 T1763 T1764 amod white,fat
R1174 T1764 T1761 conj fat,brain
R1175 T1765 T1764 punct ", ",fat
R1176 T1766 T1764 cc and,fat
R1177 T1767 T1764 conj testes,fat
R1178 T1768 T1769 punct (,Figure
R1179 T1769 T1722 parataxis Figure,revealed
R1180 T1770 T1769 nummod 2,Figure
R1181 T1771 T1769 punct ),Figure
R1182 T1772 T1722 punct .,revealed
R1183 T1774 T1775 advmod Interestingly,detected
R1184 T1776 T1775 punct ", ",detected
R1185 T1777 T1778 mark although,amplified
R1186 T1778 T1775 advcl amplified,detected
R1187 T1779 T1780 compound RT,PCR
R1188 T1780 T1778 nsubj PCR,amplified
R1189 T1781 T1780 punct -,PCR
R1190 T1782 T1783 det an,transcript
R1191 T1783 T1778 dobj transcript,amplified
R1192 T1784 T1785 advmod incorrectly,spliced
R1193 T1785 T1783 amod spliced,transcript
R1194 T1786 T1783 compound Acadm,transcript
R1195 T1787 T1775 punct ", ",detected
R1196 T1788 T1789 det no,transcripts
R1197 T1789 T1775 nsubjpass transcripts,detected
R1198 T1790 T1789 compound Acadm,transcripts
R1199 T1791 T1775 auxpass were,detected
R1200 T1792 T1775 prep by,detected
R1201 T1793 T1794 compound northern,blot
R1202 T1794 T1795 compound blot,analysis
R1203 T1795 T1792 pobj analysis,by
R1204 T1796 T1775 prep from,detected
R1205 T1797 T1798 nmod MCAD,mice
R1206 T1798 T1796 pobj mice,from
R1207 T1799 T1797 punct −,MCAD
R1208 T1800 T1797 punct /,MCAD
R1209 T1801 T1797 punct −,MCAD
R1210 T1802 T1775 punct .,detected
R1211 T1804 T1805 det These,results
R1212 T1805 T1806 nsubj results,suggest
R1213 T1807 T1806 advmod strongly,suggest
R1214 T1808 T1809 mark that,is
R1215 T1809 T1806 ccomp is,suggest
R1216 T1810 T1811 det the,RNA
R1217 T1811 T1809 nsubj RNA,is
R1218 T1812 T1811 compound mutant,RNA
R1219 T1813 T1809 acomp unstable,is
R1220 T1814 T1809 cc and,is
R1221 T1815 T1809 conj degraded,is
R1222 T1816 T1815 advmod rapidly,degraded
R1223 T1817 T1809 cc or,is
R1224 T1818 T1809 punct ", ",is
R1225 T1819 T1820 advmod alternatively,undergoes
R1226 T1820 T1809 conj undergoes,is
R1227 T1821 T1820 punct ", ",undergoes
R1228 T1822 T1823 npadvmod nonsense,mediated
R1229 T1823 T1824 amod mediated,decay
R1230 T1824 T1820 dobj decay,undergoes
R1231 T1825 T1824 compound RNA,decay
R1232 T1826 T1806 punct .,suggest
R4817 T7455 T7456 compound Northern,Blot
R4818 T7456 T7457 compound Blot,Analysis
R4819 T7458 T7457 prep from,Analysis
R4820 T7459 T7460 nmod MCAD,Mice
R4821 T7460 T7458 pobj Mice,from
R4822 T7461 T7459 punct −,MCAD
R4823 T7462 T7459 punct /,MCAD
R4824 T7463 T7459 punct −,MCAD
R4825 T7464 T7465 punct (,2
R4826 T7465 T7459 parataxis 2,MCAD
R4827 T7466 T7465 nsubj n,2
R4828 T7467 T7465 punct =,2
R4829 T7468 T7465 punct ),2
R4830 T7469 T7459 cc and,MCAD
R4831 T7470 T7459 conj MCAD,MCAD
R4832 T7471 T7470 punct +,MCAD
R4833 T7472 T7470 punct /,MCAD
R4834 T7473 T7470 punct +,MCAD
R4835 T7474 T7475 punct (,2
R4836 T7475 T7470 parataxis 2,MCAD
R4837 T7476 T7475 nsubj n,2
R4838 T7477 T7475 punct =,2
R4839 T7478 T7475 punct ),2
R4840 T7480 T7481 compound Acadm,message
R4841 T7481 T7482 nsubjpass message,detected
R4842 T7483 T7482 auxpass was,detected
R4843 T7484 T7482 prep from,detected
R4844 T7485 T7486 det the,heart
R4845 T7486 T7484 pobj heart,from
R4846 T7487 T7486 punct ", ",heart
R4847 T7488 T7486 conj liver,heart
R4848 T7489 T7488 punct ", ",liver
R4849 T7490 T7491 amod brown,fat
R4850 T7491 T7488 conj fat,liver
R4851 T7492 T7491 punct ", ",fat
R4852 T7493 T7491 conj brain,fat
R4853 T7494 T7493 punct ", ",brain
R4854 T7495 T7493 conj kidney,brain
R4855 T7496 T7495 punct ", ",kidney
R4856 T7497 T7495 cc and,kidney
R4857 T7498 T7495 conj muscle,kidney
R4858 T7499 T7486 punct (,heart
R4859 T7500 T7486 cc and,heart
R4860 T7501 T7502 amod white,fat
R4861 T7502 T7486 conj fat,heart
R4862 T7503 T7502 cc and,fat
R4863 T7504 T7502 conj testes,fat
R4864 T7505 T7506 punct ", ",shown
R4865 T7506 T7486 parataxis shown,heart
R4866 T7507 T7506 nsubj data,shown
R4867 T7508 T7506 neg not,shown
R4868 T7509 T7506 punct ),shown
R4869 T7510 T7486 prep of,heart
R4870 T7511 T7512 amod only,mice
R4871 T7512 T7510 pobj mice,of
R4872 T7513 T7512 nmod MCAD,mice
R4873 T7514 T7513 punct +,MCAD
R4874 T7515 T7513 punct /,MCAD
R4875 T7516 T7513 punct +,MCAD
R4876 T7517 T7482 punct .,detected
R4877 T7519 T7520 advmod Most,expression
R4878 T7520 T7522 nsubj expression,occurred
R4879 T7521 T7520 amod robust,expression
R4880 T7523 T7522 prep in,occurred
R4881 T7524 T7525 amod brown,fat
R4882 T7525 T7523 pobj fat,in
R4883 T7526 T7525 punct ", ",fat
R4884 T7527 T7525 conj kidney,fat
R4885 T7528 T7527 punct ", ",kidney
R4886 T7529 T7527 conj heart,kidney
R4887 T7530 T7529 punct ", ",heart
R4888 T7531 T7529 cc and,heart
R4889 T7532 T7533 amod skeletal,muscle
R4890 T7533 T7529 conj muscle,heart
R4891 T7534 T7522 punct .,occurred
R4892 T7536 T7537 nmod MCAD,mice
R4893 T7537 T7541 nsubj mice,had
R4894 T7538 T7536 punct −,MCAD
R4895 T7539 T7536 punct /,MCAD
R4896 T7540 T7536 punct −,MCAD
R4897 T7542 T7543 det no,message
R4898 T7543 T7541 dobj message,had
R4899 T7544 T7543 amod detectable,message
R4900 T7545 T7541 prep in,had
R4901 T7546 T7547 det all,tissues
R4902 T7547 T7545 pobj tissues,in
R4903 T7548 T7547 acl examined,tissues
R4904 T7549 T7541 punct .,had

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1827 39-43 SO:0000147 denotes exon
T1828 63-68 UBERON:0000948 denotes heart
T1829 100-109 SO:0000028 denotes base pair
T1830 111-113 SO:0000028 denotes bp
T1831 147-151 NCBITaxon:10088 denotes mice
T1832 186-190 NCBITaxon:10088 denotes mice
T1833 300-304 SO:0000147 denotes exon
T1834 310-314 SO:0000147 denotes exon
T1835 327-329 SO:0000028 denotes bp
T1836 338-345 SO:0000155 denotes plasmid
T1837 367-372 SO:0000147 denotes exons
T1838 391-398 SO:0000155 denotes plasmid
T1839 468-475 GO:0008380 denotes spliced
T1840 533-542 GO:0010467 denotes expressed
T1841 550-557 UBERON:0000479 denotes tissues
T1842 580-584 NCBITaxon:10088 denotes mice
T1843 606-616 GO:0010467 denotes expression
T1844 630-639 UBERON:0001348 denotes brown fat
T1845 641-647 UBERON:0002113 denotes kidney
T1846 649-654 UBERON:0000948 denotes heart
T1847 656-664 UBERON:0004288 denotes skeletal
T1848 677-682 UBERON:0002107 denotes liver
T1849 696-706 GO:0010467 denotes expression
T1850 714-719 UBERON:0000955 denotes brain
T1851 721-730 UBERON:0001347 denotes white fat
T1852 736-742 UBERON:0000473 denotes testes
T1853 811-818 GO:0008380 denotes spliced
T1854 811-818 _FRAGMENT denotes spliced
T1855 825-835 SO:1001187 denotes transcript
T1856 846-857 SO:0000673 denotes transcripts
T1857 911-915 NCBITaxon:10088 denotes mice
T1858 1030-1057 GO:0000184 denotes nonsense mediated RNA decay
T7550 1133-1137 NCBITaxon:10088 denotes Mice
T7551 1144-1151 SO:0000673 denotes message
T7552 1144-1151 CHEBI:33695 denotes message
T7553 1174-1179 UBERON:0000948 denotes heart
T7554 1181-1186 UBERON:0002107 denotes liver
T7555 1188-1197 UBERON:0001348 denotes brown fat
T7556 1199-1204 UBERON:0000955 denotes brain
T7557 1206-1212 UBERON:0002113 denotes kidney
T7558 1230-1239 UBERON:0001347 denotes white fat
T7559 1244-1250 UBERON:0000473 denotes testes
T7560 1284-1288 NCBITaxon:10088 denotes mice
T7561 1302-1312 GO:0010467 denotes expression
T7562 1325-1334 UBERON:0001348 denotes brown fat
T7563 1336-1342 UBERON:0002113 denotes kidney
T7564 1344-1349 UBERON:0000948 denotes heart
T7565 1355-1363 UBERON:0004288 denotes skeletal
T7566 1380-1384 NCBITaxon:10088 denotes mice
T7567 1403-1410 SO:0000673 denotes message
T7568 1403-1410 CHEBI:33695 denotes message
T7569 1418-1425 UBERON:0000479 denotes tissues
R1233 T1855 T1854 _lexicallyChainedTo transcript,spliced

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1859 0-3 CHEBI_SO_EXT:RNA denotes RNA
T1860 13-15 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T1861 39-43 SO_EXT:0000147 denotes exon
T1862 63-68 UBERON:0000948 denotes heart
T1863 69-72 CHEBI_SO_EXT:RNA denotes RNA
T1864 100-104 CHEBI_SO_EXT:base denotes base
T1865 100-109 SO_EXT:0000028 denotes base pair
T1866 111-113 SO_EXT:0000028 denotes bp
T1867 127-131 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T1868 131-132 SO_EXT:normal_or_wild_type_or_present denotes +
T1869 133-134 SO_EXT:normal_or_wild_type_or_present denotes +
T1870 139-143 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T1871 143-144 SO_EXT:normal_or_wild_type_or_present denotes +
T1872 145-146 SO_EXT:sequence_nullness_or_absence denotes −
T1873 147-151 NCBITaxon:10088 denotes mice
T1874 164-165 CHEBI_SO_EXT:base denotes b
T1875 178-182 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T1876 182-183 SO_EXT:sequence_nullness_or_absence denotes −
T1877 184-185 SO_EXT:sequence_nullness_or_absence denotes −
T1878 186-190 NCBITaxon:10088 denotes mice
T1879 209-217 SO_EXT:biological_sequence denotes Sequence
T1880 239-240 CHEBI_SO_EXT:base denotes b
T1881 300-304 SO_EXT:0000147 denotes exon
T1882 310-314 SO_EXT:0000147 denotes exon
T1883 327-329 SO_EXT:0000028 denotes bp
T1884 338-345 SO_EXT:0000155 denotes plasmid
T1885 346-354 SO_EXT:biological_sequence denotes sequence
T1886 367-372 SO_EXT:0000147 denotes exons
T1887 391-398 SO_EXT:0000155 denotes plasmid
T1888 399-408 SO_EXT:biological_sequence denotes sequences
T1889 435-443 SO_EXT:biological_sequence denotes sequence
T1890 450-457 SO_EXT:sequence_deletion_process denotes deleted
T1891 468-475 GO:0008380 denotes spliced
T1892 476-480 CHEBI_SO_EXT:mRNA denotes mRNA
T1893 514-519 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes Acadm
T1894 533-542 GO:0010467 denotes expressed
T1895 550-557 UBERON:0000479 denotes tissues
T1896 572-576 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T1897 576-577 SO_EXT:normal_or_wild_type_or_present denotes +
T1898 578-579 SO_EXT:normal_or_wild_type_or_present denotes +
T1899 580-584 NCBITaxon:10088 denotes mice
T1900 606-616 GO:0010467 denotes expression
T1901 630-639 UBERON:0001348 denotes brown fat
T1902 636-639 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T1903 641-647 UBERON:0002113 denotes kidney
T1904 649-654 UBERON:0000948 denotes heart
T1905 656-671 UBERON_EXT:skeletal_muscle_organ_or_tissue denotes skeletal muscle
T1906 677-682 UBERON:0002107 denotes liver
T1907 696-706 GO:0010467 denotes expression
T1908 714-719 UBERON:0000955 denotes brain
T1909 721-730 UBERON:0001347 denotes white fat
T1910 727-730 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T1911 736-742 UBERON:0000473 denotes testes
T1912 779-781 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T1913 811-818 GO:0008380 denotes spliced
T1914 811-818 _FRAGMENT denotes spliced
T1915 825-835 SO_EXT:1001187 denotes transcript
T1916 819-824 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes Acadm
T1917 840-845 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes Acadm
T1918 846-857 SO_EXT:0000673 denotes transcripts
T1919 903-907 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T1920 907-908 SO_EXT:sequence_nullness_or_absence denotes −
T1921 909-910 SO_EXT:sequence_nullness_or_absence denotes −
T1922 911-915 NCBITaxon:10088 denotes mice
T1923 957-963 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T1924 964-967 CHEBI_SO_EXT:RNA denotes RNA
T1925 1030-1038 SO_EXT:nonsense_quality_or_entity denotes nonsense
T1926 1030-1057 GO:0000184 denotes nonsense mediated RNA decay
T1927 1048-1051 CHEBI_SO_EXT:RNA denotes RNA
T7570 1097-1101 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T7571 1101-1102 SO_EXT:sequence_nullness_or_absence denotes −
T7572 1103-1104 SO_EXT:sequence_nullness_or_absence denotes −
T7573 1117-1121 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T7574 1121-1122 SO_EXT:normal_or_wild_type_or_present denotes +
T7575 1123-1124 SO_EXT:normal_or_wild_type_or_present denotes +
T7576 1133-1137 NCBITaxon:10088 denotes Mice
T7577 1138-1143 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes Acadm
T7578 1144-1151 SO_EXT:0000673 denotes message
T7579 1144-1151 CHEBI:33695 denotes message
T7580 1174-1179 UBERON:0000948 denotes heart
T7581 1181-1186 UBERON:0002107 denotes liver
T7582 1188-1197 UBERON:0001348 denotes brown fat
T7583 1194-1197 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T7584 1199-1204 UBERON:0000955 denotes brain
T7585 1206-1212 UBERON:0002113 denotes kidney
T7586 1218-1224 UBERON_EXT:muscle_structure_or_tissue denotes muscle
T7587 1230-1239 UBERON:0001347 denotes white fat
T7588 1236-1239 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T7589 1244-1250 UBERON:0000473 denotes testes
T7590 1276-1280 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T7591 1280-1281 SO_EXT:normal_or_wild_type_or_present denotes +
T7592 1282-1283 SO_EXT:normal_or_wild_type_or_present denotes +
T7593 1284-1288 NCBITaxon:10088 denotes mice
T7594 1302-1312 GO:0010467 denotes expression
T7595 1325-1334 UBERON:0001348 denotes brown fat
T7596 1331-1334 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T7597 1336-1342 UBERON:0002113 denotes kidney
T7598 1344-1349 UBERON:0000948 denotes heart
T7599 1355-1370 UBERON_EXT:skeletal_muscle_organ_or_tissue denotes skeletal muscle
T7600 1372-1376 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T7601 1376-1377 SO_EXT:sequence_nullness_or_absence denotes −
T7602 1378-1379 SO_EXT:sequence_nullness_or_absence denotes −
T7603 1380-1384 NCBITaxon:10088 denotes mice
T7604 1403-1410 SO_EXT:0000673 denotes message
T7605 1403-1410 CHEBI:33695 denotes message
T7606 1418-1425 UBERON:0000479 denotes tissues
R1234 T1915 T1914 _lexicallyChainedTo transcript,spliced