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PMC:1189074 / 4977-5703 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1088 11-17 VBZ denotes arises
T1091 5-10 NN denotes codon
T1094 0-4 NN denotes stop
T1095 18-23 IN denotes after
T1096 24-35 NN denotes translation
T1097 36-38 IN denotes of
T1098 39-43 RB denotes only
T1099 44-49 CD denotes seven
T1100 56-61 NNS denotes acids
T1101 50-55 NN denotes amino
T1102 62-66 IN denotes from
T1103 67-70 DT denotes the
T1104 82-86 NN denotes exon
T1105 71-81 VBN denotes duplicated
T1106 87-88 CD denotes 8
T1107 88-89 . denotes .
T1108 89-259 sentence denotes The resulting MCAD monomer is missing the C-terminal domain α-helixes that are responsible for making intersubunit contacts to generate the functional MCAD homotetramer.
T1109 90-93 DT denotes The
T1110 109-116 NN denotes monomer
T1111 94-103 VBG denotes resulting
T1112 104-108 NN denotes MCAD
T1113 120-127 VBG denotes missing
T1114 117-119 VBZ denotes is
T1115 128-131 DT denotes the
T1116 152-159 NNS denotes helixes
T1117 132-133 NN denotes C
T1118 134-142 JJ denotes terminal
T1119 133-134 HYPH denotes -
T1120 143-149 NN denotes domain
T1121 150-151 NN denotes α
T1122 151-152 HYPH denotes -
T1123 160-164 WDT denotes that
T1124 165-168 VBP denotes are
T1125 169-180 JJ denotes responsible
T1126 181-184 IN denotes for
T1127 185-191 VBG denotes making
T1128 192-204 NN denotes intersubunit
T1129 205-213 NNS denotes contacts
T1130 214-216 TO denotes to
T1131 217-225 VB denotes generate
T1132 226-229 DT denotes the
T1133 246-258 NN denotes homotetramer
T1134 230-240 JJ denotes functional
T1135 241-245 NN denotes MCAD
T1136 258-259 . denotes .
T7247 270-278 NN denotes Strategy
T7248 279-282 IN denotes for
T7249 283-293 NN denotes Disruption
T7250 294-296 IN denotes of
T7251 297-300 DT denotes the
T7252 313-317 NN denotes Gene
T7253 301-306 NN denotes Mouse
T7254 307-312 NN denotes Acadm
T7255 317-435 sentence denotes (A) The MCAD IV2 insertion targeting vector with a deleted 1.3-kb region encompassing exon 10 and flanking sequences.
T7256 318-319 -LRB- denotes (
T7257 319-320 LS denotes A
T7258 355-361 NN denotes vector
T7259 320-321 -RRB- denotes )
T7260 322-325 DT denotes The
T7261 326-330 NN denotes MCAD
T7262 335-344 NN denotes insertion
T7263 331-334 NN denotes IV2
T7264 345-354 NN denotes targeting
T7265 362-366 IN denotes with
T7266 367-368 DT denotes a
T7267 384-390 NN denotes region
T7268 369-376 VBN denotes deleted
T7269 377-380 CD denotes 1.3
T7270 381-383 NN denotes kb
T7271 380-381 HYPH denotes -
T7272 391-403 VBG denotes encompassing
T7273 404-408 NN denotes exon
T7274 409-411 CD denotes 10
T7275 412-415 CC denotes and
T7276 416-424 VBG denotes flanking
T7277 425-434 NNS denotes sequences
T7278 434-435 . denotes .
T7279 435-599 sentence denotes MCAD IV2 undergoes gap repair upon homologous recombination at the endogenous Acadm locus resulting in a duplication of exons 8, 9, and 10 at the disrupted allele.
T7280 436-440 NN denotes MCAD
T7281 441-444 NN denotes IV2
T7282 445-454 VBZ denotes undergoes
T7283 455-458 NN denotes gap
T7284 459-465 NN denotes repair
T7285 466-470 IN denotes upon
T7286 471-481 JJ denotes homologous
T7287 482-495 NN denotes recombination
T7288 496-498 IN denotes at
T7289 499-502 DT denotes the
T7290 520-525 NN denotes locus
T7291 503-513 JJ denotes endogenous
T7292 514-519 NN denotes Acadm
T7293 526-535 VBG denotes resulting
T7294 536-538 IN denotes in
T7295 539-540 DT denotes a
T7296 541-552 NN denotes duplication
T7297 553-555 IN denotes of
T7298 556-561 NNS denotes exons
T7299 562-563 CD denotes 8
T7300 563-565 , denotes ,
T7301 565-566 CD denotes 9
T7302 566-568 , denotes ,
T7303 568-571 CC denotes and
T7304 572-574 CD denotes 10
T7305 575-577 IN denotes at
T7306 578-581 DT denotes the
T7307 592-598 NN denotes allele
T7308 582-591 VBN denotes disrupted
T7309 598-599 . denotes .
T7310 599-687 sentence denotes (B) Southern blot analysis of EcoRI-digested genomic DNA from ES cells screened by PCR.
T7311 600-601 -LRB- denotes (
T7312 601-602 LS denotes B
T7313 618-626 NN denotes analysis
T7314 602-603 -RRB- denotes )
T7315 604-612 NNP denotes Southern
T7316 613-617 NN denotes blot
T7317 627-629 IN denotes of
T7318 630-635 NN denotes EcoRI
T7319 636-644 VBN denotes digested
T7320 635-636 HYPH denotes -
T7321 653-656 NN denotes DNA
T7322 645-652 JJ denotes genomic
T7323 657-661 IN denotes from
T7324 662-664 NN denotes ES
T7325 665-670 NNS denotes cells
T7326 671-679 VBN denotes screened
T7327 680-682 IN denotes by
T7328 683-686 NN denotes PCR
T7329 686-687 . denotes .
T7331 688-693 NN denotes Probe
T7332 694-695 NN denotes A
T7334 695-697 , denotes ,
T7335 697-698 DT denotes a
T7336 703-711 NN denotes fragment
T7337 699-702 NN denotes DNA
T7338 712-722 VBG denotes consisting
T7339 723-725 IN denotes of
R695 T1091 T1088 nsubj codon,arises
R698 T1094 T1091 compound stop,codon
R699 T1095 T1088 prep after,arises
R700 T1096 T1095 pobj translation,after
R701 T1097 T1096 prep of,translation
R702 T1098 T1099 advmod only,seven
R703 T1099 T1100 nummod seven,acids
R704 T1100 T1097 pobj acids,of
R705 T1101 T1100 compound amino,acids
R706 T1102 T1100 prep from,acids
R707 T1103 T1104 det the,exon
R708 T1104 T1102 pobj exon,from
R709 T1105 T1104 amod duplicated,exon
R710 T1106 T1104 nummod 8,exon
R711 T1107 T1088 punct .,arises
R712 T1109 T1110 det The,monomer
R713 T1110 T1113 nsubj monomer,missing
R714 T1111 T1110 amod resulting,monomer
R715 T1112 T1110 compound MCAD,monomer
R716 T1114 T1113 aux is,missing
R717 T1115 T1116 det the,helixes
R718 T1116 T1113 dobj helixes,missing
R719 T1117 T1118 npadvmod C,terminal
R720 T1118 T1120 amod terminal,domain
R721 T1119 T1118 punct -,terminal
R722 T1120 T1116 compound domain,helixes
R723 T1121 T1116 compound α,helixes
R724 T1122 T1116 punct -,helixes
R725 T1123 T1124 dep that,are
R726 T1124 T1116 relcl are,helixes
R727 T1125 T1124 acomp responsible,are
R728 T1126 T1125 prep for,responsible
R729 T1127 T1126 pcomp making,for
R730 T1128 T1129 compound intersubunit,contacts
R731 T1129 T1127 dobj contacts,making
R732 T1130 T1131 aux to,generate
R733 T1131 T1127 advcl generate,making
R734 T1132 T1133 det the,homotetramer
R735 T1133 T1131 dobj homotetramer,generate
R736 T1134 T1133 amod functional,homotetramer
R737 T1135 T1133 compound MCAD,homotetramer
R738 T1136 T1113 punct .,missing
R4678 T7248 T7247 prep for,Strategy
R4679 T7249 T7248 pobj Disruption,for
R4680 T7250 T7249 prep of,Disruption
R4681 T7251 T7252 det the,Gene
R4682 T7252 T7250 pobj Gene,of
R4683 T7253 T7252 compound Mouse,Gene
R4684 T7254 T7252 compound Acadm,Gene
R4685 T7256 T7257 punct (,A
R4686 T7257 T7258 meta A,vector
R4687 T7259 T7257 punct ),A
R4688 T7260 T7258 det The,vector
R4689 T7261 T7262 compound MCAD,insertion
R4690 T7262 T7258 compound insertion,vector
R4691 T7263 T7262 compound IV2,insertion
R4692 T7264 T7258 compound targeting,vector
R4693 T7265 T7258 prep with,vector
R4694 T7266 T7267 det a,region
R4695 T7267 T7265 pobj region,with
R4696 T7268 T7267 amod deleted,region
R4697 T7269 T7270 nummod 1.3,kb
R4698 T7270 T7267 compound kb,region
R4699 T7271 T7270 punct -,kb
R4700 T7272 T7267 acl encompassing,region
R4701 T7273 T7272 dobj exon,encompassing
R4702 T7274 T7273 nummod 10,exon
R4703 T7275 T7273 cc and,exon
R4704 T7276 T7277 amod flanking,sequences
R4705 T7277 T7273 conj sequences,exon
R4706 T7278 T7258 punct .,vector
R4707 T7280 T7281 compound MCAD,IV2
R4708 T7281 T7282 nsubj IV2,undergoes
R4709 T7283 T7284 compound gap,repair
R4710 T7284 T7282 dobj repair,undergoes
R4711 T7285 T7282 prep upon,undergoes
R4712 T7286 T7287 amod homologous,recombination
R4713 T7287 T7285 pobj recombination,upon
R4714 T7288 T7282 prep at,undergoes
R4715 T7289 T7290 det the,locus
R4716 T7290 T7288 pobj locus,at
R4717 T7291 T7290 amod endogenous,locus
R4718 T7292 T7290 compound Acadm,locus
R4719 T7293 T7282 advcl resulting,undergoes
R4720 T7294 T7293 prep in,resulting
R4721 T7295 T7296 det a,duplication
R4722 T7296 T7294 pobj duplication,in
R4723 T7297 T7296 prep of,duplication
R4724 T7298 T7299 nmod exons,8
R4725 T7299 T7297 pobj 8,of
R4726 T7300 T7299 punct ", ",8
R4727 T7301 T7299 conj 9,8
R4728 T7302 T7301 punct ", ",9
R4729 T7303 T7301 cc and,9
R4730 T7304 T7301 conj 10,9
R4731 T7305 T7296 prep at,duplication
R4732 T7306 T7307 det the,allele
R4733 T7307 T7305 pobj allele,at
R4734 T7308 T7307 amod disrupted,allele
R4735 T7309 T7282 punct .,undergoes
R4736 T7311 T7312 punct (,B
R4737 T7312 T7313 meta B,analysis
R4738 T7314 T7312 punct ),B
R4739 T7315 T7316 compound Southern,blot
R4740 T7316 T7313 compound blot,analysis
R4741 T7317 T7313 prep of,analysis
R4742 T7318 T7319 npadvmod EcoRI,digested
R4743 T7319 T7321 amod digested,DNA
R4744 T7320 T7319 punct -,digested
R4745 T7321 T7317 pobj DNA,of
R4746 T7322 T7321 amod genomic,DNA
R4747 T7323 T7321 prep from,DNA
R4748 T7324 T7325 compound ES,cells
R4749 T7325 T7323 pobj cells,from
R4750 T7326 T7325 acl screened,cells
R4751 T7327 T7326 prep by,screened
R4752 T7328 T7327 pobj PCR,by
R4753 T7329 T7313 punct .,analysis
R4754 T7331 T7332 compound Probe,A
R4756 T7334 T7332 punct ", ",A
R4757 T7335 T7336 det a,fragment
R4758 T7336 T7332 appos fragment,A
R4759 T7337 T7336 compound DNA,fragment
R4760 T7338 T7336 acl consisting,fragment
R4761 T7339 T7338 prep of,consisting

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1456 24-35 GO:0006412 denotes translation
T1457 82-86 SO:0000147 denotes exon
T1458 143-149 SO:0000417 denotes domain
T1459 150-159 SO:0001117 denotes α-helixes
T7397 301-306 NCBITaxon:10088 denotes Mouse
T7398 313-317 SO:0000704 denotes Gene
T7399 345-361 SO:0001644 denotes targeting vector
T7400 404-408 SO:0000147 denotes exon
T7401 416-424 SO:0000357 denotes flanking
T7402 556-561 SO:0000147 denotes exons
T7403 592-598 SO:0001023 denotes allele
T7404 645-652 SO:0001026 denotes genomic
T7405 662-670 CL:0002322 denotes ES cells

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1510 24-35 GO:0006412 denotes translation
T1511 50-61 CHEBI_SO_EXT:amino_acid denotes amino acids
T1512 71-81 SO_EXT:sequence_duplication_process denotes duplicated
T1513 82-86 SO_EXT:0000147 denotes exon
T1514 104-108 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T1515 132-142 CHEBI_SO_EXT:C_terminus_or_C_terminal_region denotes C-terminal
T1516 143-149 SO_EXT:0000417 denotes domain
T1517 150-159 SO_EXT:0001117 denotes α-helixes
T1518 241-245 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T1519 250-258 GO_EXT:tetrameric_macromolecular_complex denotes tetramer
T7411 301-306 NCBITaxon:10088 denotes Mouse
T7412 307-312 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes Acadm
T7413 313-317 SO_EXT:0000704 denotes Gene
T7414 326-330 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T7415 335-344 SO_EXT:sequence_insertion_entity_or_process denotes insertion
T7416 345-361 SO_EXT:0001644 denotes targeting vector
T7417 369-376 SO_EXT:sequence_deletion_process denotes deleted
T7418 382-383 CHEBI_SO_EXT:base denotes b
T7419 404-408 SO_EXT:0000147 denotes exon
T7420 416-424 SO:0000357 denotes flanking
T7421 425-434 SO_EXT:biological_sequence denotes sequences
T7422 436-440 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T7423 455-465 GO_EXT:DNA_gap_repair denotes gap repair
T7424 482-495 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T7425 514-519 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes Acadm
T7426 541-552 SO_EXT:sequence_duplication_entity_or_process denotes duplication
T7427 556-561 SO_EXT:0000147 denotes exons
T7428 592-598 SO_EXT:0001023 denotes allele
T7429 645-656 SO_EXT:genomic_DNA denotes genomic DNA
T7430 653-656 CHEBI_SO_EXT:DNA denotes DNA
T7431 662-670 CL:0002322 denotes ES cells
T7432 665-670 CL_GO_EXT:cell denotes cells
T7433 688-693 CHEBI_SO_EXT:molecular_probe denotes Probe
T7434 699-702 CHEBI_SO_EXT:DNA denotes DNA