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PMC:1189074 / 23041-23626 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T5796 584-585 . denotes .
T5795 583-584 -RRB- denotes )
T5794 577-583 NNP denotes States
T5793 570-576 NNP denotes United
T5792 568-570 , denotes ,
T5791 559-568 NNP denotes Wisconsin
T5790 557-559 , denotes ,
T5789 550-557 NNP denotes Madison
T5788 548-550 , denotes ,
T5787 541-548 NNP denotes Promega
T5786 540-541 -LRB- denotes (
T5785 528-532 NNP denotes Easy
T5784 533-539 NNP denotes vector
T5783 525-526 HYPH denotes -
T5782 526-527 NN denotes T
T5781 521-525 NN denotes pGEM
T5780 516-520 IN denotes into
T5779 505-515 VBG denotes subcloning
T5778 499-504 IN denotes after
T5777 476-488 RB denotes subsequently
T5776 471-475 VBD denotes were
T5775 489-498 VBN denotes sequenced
T5774 461-470 NNS denotes fragments
T5773 457-460 NN denotes PCR
T5772 456-585 sentence denotes PCR fragments were subsequently sequenced after subcloning into pGEM-T Easy vector (Promega, Madison, Wisconsin, United States).
T5771 455-456 . denotes .
T5770 450-455 RB denotes above
T5769 440-449 VBN denotes described
T5768 437-439 IN denotes as
T5767 422-426 VBD denotes were
T5766 427-436 VBN denotes performed
T5765 407-421 NNS denotes amplifications
T5764 403-406 NN denotes PCR
T5763 402-456 sentence denotes PCR amplifications were performed as described above.
T5762 401-402 . denotes .
T5761 396-401 NN denotes Acadm
T5760 393-395 IN denotes of
T5759 390-392 CD denotes 11
T5758 385-389 NN denotes exon
T5757 381-384 CC denotes and
T5756 379-380 CD denotes 7
T5755 374-378 NN denotes exon
T5754 371-373 IN denotes to
T5753 362-370 JJ denotes specific
T5752 345-361 NNS denotes oligonucleotides
T5751 339-344 VBG denotes using
T5750 316-328 RB denotes subsequently
T5749 312-315 VBD denotes was
T5748 329-338 VBN denotes performed
T5747 308-311 NN denotes PCR
T5746 307-402 sentence denotes PCR was subsequently performed using oligonucleotides specific to exon 7 and exon 11 of Acadm.
T5745 306-307 . denotes .
T5744 305-306 -RRB- denotes )
T5743 299-305 NNP denotes States
T5742 292-298 NNP denotes United
T5741 290-292 , denotes ,
T5740 280-290 NNP denotes California
T5739 278-280 , denotes ,
T5738 274-278 NNP denotes View
T5737 265-273 NNP denotes Mountain
T5736 263-265 , denotes ,
T5735 255-263 NNP denotes Clontech
T5734 254-255 -LRB- denotes (
T5733 241-253 NN denotes manufacturer
T5732 237-240 DT denotes the
T5731 234-236 IN denotes by
T5730 222-233 VBN denotes recommended
T5729 219-221 IN denotes as
T5728 202-218 NNS denotes oligonucleotides
T5727 195-201 JJ denotes random
T5726 189-194 VBG denotes using
T5725 175-178 VBD denotes was
T5724 179-188 VBN denotes performed
T5723 161-174 NN denotes transcription
T5722 153-160 JJ denotes Reverse
T5721 152-307 sentence denotes Reverse transcription was performed using random oligonucleotides as recommended by the manufacturer (Clontech, Mountain View, California, United States).
T5720 151-152 . denotes .
T5719 150-151 -RRB- denotes ]
T5718 148-150 CD denotes 27
T5717 147-148 -LRB- denotes [
T5716 128-139 NN denotes thiocyanate
T5715 140-146 NN denotes method
T5714 116-127 NN denotes guanidinium
T5713 110-115 VBG denotes using
T5712 99-109 NNS denotes techniques
T5711 90-98 JJ denotes standard
T5710 87-89 IN denotes by
T5709 80-81 SYM denotes −
T5708 79-80 HYPH denotes /
T5707 78-79 SYM denotes −
T5706 74-78 NN denotes MCAD
T5705 70-73 CC denotes and
T5704 68-70 , denotes ,
T5703 67-68 SYM denotes −
T5702 66-67 HYPH denotes /
T5701 65-66 SYM denotes +
T5700 61-65 NN denotes MCAD
T5699 59-61 , denotes ,
T5698 58-59 SYM denotes +
T5697 57-58 HYPH denotes /
T5696 56-57 SYM denotes +
T5695 52-56 NN denotes MCAD
T5694 82-86 NNS denotes mice
T5693 48-51 JJ denotes old
T5692 44-47 NN denotes day
T5691 41-43 CD denotes 30
T5690 38-40 IN denotes of
T5689 32-37 NN denotes heart
T5688 28-31 DT denotes the
T5687 23-27 IN denotes from
T5686 10-13 VBD denotes was
T5685 14-22 VBN denotes isolated
T5684 6-9 NN denotes RNA
T5683 0-5 JJ denotes Total
R3579 T5683 T5684 amod Total,RNA
R3580 T5684 T5685 nsubjpass RNA,isolated
R3581 T5686 T5685 auxpass was,isolated
R3582 T5687 T5685 prep from,isolated
R3583 T5688 T5689 det the,heart
R3584 T5689 T5687 pobj heart,from
R3585 T5690 T5689 prep of,heart
R3586 T5691 T5692 nummod 30,day
R3587 T5692 T5693 npadvmod day,old
R3588 T5693 T5694 amod old,mice
R3589 T5694 T5690 pobj mice,of
R3590 T5695 T5694 nmod MCAD,mice
R3591 T5696 T5695 punct +,MCAD
R3592 T5697 T5695 punct /,MCAD
R3593 T5698 T5695 punct +,MCAD
R3594 T5699 T5695 punct ", ",MCAD
R3595 T5700 T5695 conj MCAD,MCAD
R3596 T5701 T5700 punct +,MCAD
R3597 T5702 T5700 punct /,MCAD
R3598 T5703 T5700 punct −,MCAD
R3599 T5704 T5700 punct ", ",MCAD
R3600 T5705 T5700 cc and,MCAD
R3601 T5706 T5700 conj MCAD,MCAD
R3602 T5707 T5706 punct −,MCAD
R3603 T5708 T5706 punct /,MCAD
R3604 T5709 T5706 punct −,MCAD
R3605 T5710 T5685 prep by,isolated
R3606 T5711 T5712 amod standard,techniques
R3607 T5712 T5710 pobj techniques,by
R3608 T5713 T5685 advcl using,isolated
R3609 T5714 T5715 compound guanidinium,method
R3610 T5715 T5713 dobj method,using
R3611 T5716 T5715 compound thiocyanate,method
R3612 T5717 T5718 punct [,27
R3613 T5718 T5685 parataxis 27,isolated
R3614 T5719 T5718 punct ],27
R3615 T5720 T5685 punct .,isolated
R3616 T5722 T5723 amod Reverse,transcription
R3617 T5723 T5724 nsubjpass transcription,performed
R3618 T5725 T5724 auxpass was,performed
R3619 T5726 T5724 advcl using,performed
R3620 T5727 T5728 amod random,oligonucleotides
R3621 T5728 T5726 dobj oligonucleotides,using
R3622 T5729 T5730 mark as,recommended
R3623 T5730 T5724 advcl recommended,performed
R3624 T5731 T5730 agent by,recommended
R3625 T5732 T5733 det the,manufacturer
R3626 T5733 T5731 pobj manufacturer,by
R3627 T5734 T5735 punct (,Clontech
R3628 T5735 T5733 parataxis Clontech,manufacturer
R3629 T5736 T5735 punct ", ",Clontech
R3630 T5737 T5738 compound Mountain,View
R3631 T5738 T5735 npadvmod View,Clontech
R3632 T5739 T5735 punct ", ",Clontech
R3633 T5740 T5735 npadvmod California,Clontech
R3634 T5741 T5735 punct ", ",Clontech
R3635 T5742 T5743 compound United,States
R3636 T5743 T5735 npadvmod States,Clontech
R3637 T5744 T5735 punct ),Clontech
R3638 T5745 T5724 punct .,performed
R3639 T5747 T5748 nsubjpass PCR,performed
R3640 T5749 T5748 auxpass was,performed
R3641 T5750 T5748 advmod subsequently,performed
R3642 T5751 T5748 advcl using,performed
R3643 T5752 T5751 dobj oligonucleotides,using
R3644 T5753 T5752 amod specific,oligonucleotides
R3645 T5754 T5753 prep to,specific
R3646 T5755 T5754 pobj exon,to
R3647 T5756 T5755 nummod 7,exon
R3648 T5757 T5755 cc and,exon
R3649 T5758 T5755 conj exon,exon
R3650 T5759 T5758 nummod 11,exon
R3651 T5760 T5755 prep of,exon
R3652 T5761 T5760 pobj Acadm,of
R3653 T5762 T5748 punct .,performed
R3654 T5764 T5765 compound PCR,amplifications
R3655 T5765 T5766 nsubjpass amplifications,performed
R3656 T5767 T5766 auxpass were,performed
R3657 T5768 T5769 mark as,described
R3658 T5769 T5766 advcl described,performed
R3659 T5770 T5769 advmod above,described
R3660 T5771 T5766 punct .,performed
R3661 T5773 T5774 compound PCR,fragments
R3662 T5774 T5775 nsubjpass fragments,sequenced
R3663 T5776 T5775 auxpass were,sequenced
R3664 T5777 T5775 advmod subsequently,sequenced
R3665 T5778 T5775 prep after,sequenced
R3666 T5779 T5778 pcomp subcloning,after
R3667 T5780 T5779 prep into,subcloning
R3668 T5781 T5782 compound pGEM,T
R3669 T5782 T5784 compound T,vector
R3670 T5783 T5782 punct -,T
R3671 T5784 T5780 pobj vector,into
R3672 T5785 T5784 compound Easy,vector
R3673 T5786 T5787 punct (,Promega
R3674 T5787 T5784 parataxis Promega,vector
R3675 T5788 T5787 punct ", ",Promega
R3676 T5789 T5787 npadvmod Madison,Promega
R3677 T5790 T5787 punct ", ",Promega
R3678 T5791 T5787 npadvmod Wisconsin,Promega
R3679 T5792 T5787 punct ", ",Promega
R3680 T5793 T5794 compound United,States
R3681 T5794 T5787 npadvmod States,Promega
R3682 T5795 T5787 punct ),Promega
R3683 T5796 T5775 punct .,sequenced

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6079 533-539 SO:0000440 denotes vector
T6078 385-389 SO:0000147 denotes exon
T6077 374-378 SO:0000147 denotes exon
T6076 153-174 GO:0001171 denotes Reverse transcription
T6075 128-139 CHEBI:18022 denotes thiocyanate
T6074 116-127 CHEBI:30087 denotes guanidinium
T6073 82-86 NCBITaxon:10088 denotes mice
T6072 32-37 UBERON:0000948 denotes heart

2_test

Id Subject Object Predicate Lexical cue
16121256-2440339-86078348 148-150 2440339 denotes 27
T68645 148-150 2440339 denotes 27

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6114 58-59 SO_EXT:normal_or_wild_type_or_present denotes +
T6113 56-57 SO_EXT:normal_or_wild_type_or_present denotes +
T6112 52-56 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T6111 32-37 UBERON:0000948 denotes heart
T6110 6-9 CHEBI_SO_EXT:RNA denotes RNA
T6130 533-539 SO_EXT:0000440 denotes vector
T6129 396-401 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes Acadm
T6128 385-389 SO_EXT:0000147 denotes exon
T6127 374-378 SO_EXT:0000147 denotes exon
T6126 345-361 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotides
T6125 202-218 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotides
T6124 153-174 GO:0001171 denotes Reverse transcription
T6123 128-139 CHEBI:18022 denotes thiocyanate
T6122 116-127 CHEBI:30087 denotes guanidinium
T6121 82-86 NCBITaxon:10088 denotes mice
T6120 80-81 SO_EXT:sequence_nullness_or_absence denotes −
T6119 78-79 SO_EXT:sequence_nullness_or_absence denotes −
T6118 74-78 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD
T6117 67-68 SO_EXT:sequence_nullness_or_absence denotes −
T6116 65-66 SO_EXT:normal_or_wild_type_or_present denotes +
T6115 61-65 GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase denotes MCAD