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Acid and Acylcarnitine Analysis\nUrine organic acid analysis revealed that MCAD−/− mice developed an organic acid profile similar to MCAD-deficient human patients. Specifically, when fasted for 18 h, MCAD−/− mice developed significantly elevated concentrations of adipic, suberic, and sebacic acids and hexanoylglycine as compared to MCAD+/+ controls, which showed trace to no detectable amounts of the same organic acids (Table 1). Adipic acid is not specific to MCAD deficiency. We also evaluated β-hydroxybutyric and acetoacetic concentrations and found no significant differences between MCAD genotypes (data not shown).\nComparison of MCAD+/+ and MCAD−/− mice revealed no significant differences in total serum carnitine concentrations between MCAD+/+ and MCAD−/− mice, but MCAD−/− mice had a 5- to 6-fold elevation of serum decenoylcarnitine evident in the acylcarnitine profile (Figure 4A). Bile acylcarnitine analysis revealed a similar acylcarnitine pattern as in serum (Figure 4B). However, the acylcarnitine profiles of the MCAD−/− mice are different from those of human MCAD-deficient patients (Figure 4C). Human patients present with elevated levels of C6, C8, and C10:1 acylcarnitines, as did the mutant mice; however, the predominant peak was C8 acylcarnitine in humans, whereas in the mouse it was C10:1 acylcarnitine.\nFigure 4 Acylcarnitine Analyses\n(A) Serum acylcarnitine analysis of MCAD+/+ (n = 4) and MCAD−/− mice (n = 4)\nThere are significant elevations in acylcarnitine species as indicated in MCAD−/− mice. Values shown are mean values ± standard deviation (SD). Asterisk indicates p \u003c 0.002 and ‡ indicates p \u003c 0.01.\n(B) There are significant elevations in bile acylcarnitines of the same mice shown in (A) as indicated. Values shown are mean values ± SD. Asterisk indicates p \u003c 0.001.\n(C) Bile acylcarnitine profile of an MCAD−/− mouse compared to a human patient with MCAD deficiency. Internal standards are indicated by an asterisk."}
craft-ca-core-dev
{"project":"craft-ca-core-dev","denotations":[{"id":"T7970","span":{"begin":1884,"end":1889},"obj":"NCBITaxon:9606"},{"id":"T7969","span":{"begin":1864,"end":1869},"obj":"NCBITaxon:10088"},{"id":"T7968","span":{"begin":1828,"end":1841},"obj":"CHEBI:17387"},{"id":"T7967","span":{"begin":1823,"end":1827},"obj":"UBERON:0001970"},{"id":"T7966","span":{"begin":1722,"end":1726},"obj":"NCBITaxon:10088"},{"id":"T7965","span":{"begin":1695,"end":1709},"obj":"CHEBI:17387"},{"id":"T7964","span":{"begin":1690,"end":1694},"obj":"UBERON:0001970"},{"id":"T7963","span":{"begin":1533,"end":1537},"obj":"NCBITaxon:10088"},{"id":"T7962","span":{"begin":1487,"end":1500},"obj":"CHEBI:17387"},{"id":"T7961","span":{"begin":1438,"end":1442},"obj":"NCBITaxon:10088"},{"id":"T7960","span":{"begin":1384,"end":1397},"obj":"CHEBI:17387"},{"id":"T7959","span":{"begin":1378,"end":1383},"obj":"UBERON:0001977"},{"id":"T7958","span":{"begin":1351,"end":1364},"obj":"CHEBI:17387"},{"id":"T3218","span":{"begin":1326,"end":1339},"obj":"CHEBI:17387"},{"id":"T3217","span":{"begin":1307,"end":1312},"obj":"NCBITaxon:10088"},{"id":"T3216","span":{"begin":1284,"end":1290},"obj":"NCBITaxon:9606"},{"id":"T3215","span":{"begin":1267,"end":1280},"obj":"CHEBI:17387"},{"id":"T3214","span":{"begin":1224,"end":1228},"obj":"NCBITaxon:10088"},{"id":"T3213","span":{"begin":1190,"end":1204},"obj":"CHEBI:17387"},{"id":"T3212","span":{"begin":1125,"end":1130},"obj":"NCBITaxon:9606"},{"id":"T3211","span":{"begin":1082,"end":1087},"obj":"NCBITaxon:9606"},{"id":"T3210","span":{"begin":1049,"end":1053},"obj":"NCBITaxon:10088"},{"id":"T3209","span":{"begin":1011,"end":1024},"obj":"CHEBI:17387"},{"id":"T3208","span":{"begin":979,"end":984},"obj":"UBERON:0001977"},{"id":"T3207","span":{"begin":951,"end":964},"obj":"CHEBI:17387"},{"id":"T3206","span":{"begin":909,"end":922},"obj":"CHEBI:17387"},{"id":"T3205","span":{"begin":904,"end":908},"obj":"UBERON:0001970"},{"id":"T3204","span":{"begin":869,"end":882},"obj":"CHEBI:17387"},{"id":"T3203","span":{"begin":836,"end":853},"obj":"CHEBI:86063"},{"id":"T3202","span":{"begin":830,"end":835},"obj":"UBERON:0001977"},{"id":"T3201","span":{"begin":793,"end":797},"obj":"NCBITaxon:10088"},{"id":"T3200","span":{"begin":775,"end":779},"obj":"NCBITaxon:10088"},{"id":"T3199","span":{"begin":722,"end":731},"obj":"CHEBI:17126"},{"id":"T3198","span":{"begin":716,"end":721},"obj":"UBERON:0001977"},{"id":"T3197","span":{"begin":666,"end":670},"obj":"NCBITaxon:10088"},{"id":"T3196","span":{"begin":527,"end":538},"obj":"CHEBI:15344"},{"id":"T3195","span":{"begin":506,"end":522},"obj":"CHEBI:20067"},{"id":"T3194","span":{"begin":440,"end":451},"obj":"CHEBI:30832"},{"id":"T3193","span":{"begin":415,"end":428},"obj":"CHEBI:64709"},{"id":"T3192","span":{"begin":310,"end":325},"obj":"CHEBI:64390"},{"id":"T3191","span":{"begin":292,"end":305},"obj":"CHEBI:41865"},{"id":"T3190","span":{"begin":300,"end":305},"obj":"CHEBI:9300"},{"id":"T3189","span":{"begin":279,"end":286},"obj":"_FRAGMENT"},{"id":"T3188","span":{"begin":300,"end":305},"obj":"CHEBI:30832"},{"id":"T3187","span":{"begin":271,"end":277},"obj":"_FRAGMENT"},{"id":"T3186","span":{"begin":215,"end":219},"obj":"NCBITaxon:10088"},{"id":"T3185","span":{"begin":155,"end":160},"obj":"NCBITaxon:9606"},{"id":"T3184","span":{"begin":108,"end":120},"obj":"CHEBI:64709"},{"id":"T3183","span":{"begin":90,"end":94},"obj":"NCBITaxon:10088"},{"id":"T3182","span":{"begin":46,"end":58},"obj":"CHEBI:64709"},{"id":"T3181","span":{"begin":40,"end":45},"obj":"UBERON:0001088"},{"id":"T3180","span":{"begin":17,"end":30},"obj":"CHEBI:17387"},{"id":"T3179","span":{"begin":0,"end":12},"obj":"CHEBI:64709"}],"relations":[{"id":"R2066","pred":"_lexicallyChainedTo","subj":"T3188","obj":"T3187"},{"id":"R2067","pred":"_lexicallyChainedTo","subj":"T3190","obj":"T3189"}],"text":"Organic Acid and Acylcarnitine Analysis\nUrine organic acid analysis revealed that MCAD−/− mice developed an organic acid profile similar to MCAD-deficient human patients. Specifically, when fasted for 18 h, MCAD−/− mice developed significantly elevated concentrations of adipic, suberic, and sebacic acids and hexanoylglycine as compared to MCAD+/+ controls, which showed trace to no detectable amounts of the same organic acids (Table 1). Adipic acid is not specific to MCAD deficiency. We also evaluated β-hydroxybutyric and acetoacetic concentrations and found no significant differences between MCAD genotypes (data not shown).\nComparison of MCAD+/+ and MCAD−/− mice revealed no significant differences in total serum carnitine concentrations between MCAD+/+ and MCAD−/− mice, but MCAD−/− mice had a 5- to 6-fold elevation of serum decenoylcarnitine evident in the acylcarnitine profile (Figure 4A). Bile acylcarnitine analysis revealed a similar acylcarnitine pattern as in serum (Figure 4B). However, the acylcarnitine profiles of the MCAD−/− mice are different from those of human MCAD-deficient patients (Figure 4C). Human patients present with elevated levels of C6, C8, and C10:1 acylcarnitines, as did the mutant mice; however, the predominant peak was C8 acylcarnitine in humans, whereas in the mouse it was C10:1 acylcarnitine.\nFigure 4 Acylcarnitine Analyses\n(A) Serum acylcarnitine analysis of MCAD+/+ (n = 4) and MCAD−/− mice (n = 4)\nThere are significant elevations in acylcarnitine species as indicated in MCAD−/− mice. Values shown are mean values ± standard deviation (SD). Asterisk indicates p \u003c 0.002 and ‡ indicates p \u003c 0.01.\n(B) There are significant elevations in bile acylcarnitines of the same mice shown in (A) as indicated. Values shown are mean values ± SD. Asterisk indicates p \u003c 0.001.\n(C) Bile acylcarnitine profile of an MCAD−/− mouse compared to a human patient with MCAD deficiency. Internal standards are indicated by an asterisk."}
craft-ca-core-ex-dev
{"project":"craft-ca-core-ex-dev","denotations":[{"id":"T7996","span":{"begin":1903,"end":1907},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T7995","span":{"begin":1884,"end":1889},"obj":"NCBITaxon:9606"},{"id":"T7994","span":{"begin":1864,"end":1869},"obj":"NCBITaxon:10088"},{"id":"T7993","span":{"begin":1862,"end":1863},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T7992","span":{"begin":1860,"end":1861},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T7991","span":{"begin":1856,"end":1860},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T7990","span":{"begin":1828,"end":1841},"obj":"CHEBI:17387"},{"id":"T7989","span":{"begin":1823,"end":1827},"obj":"UBERON:0001970"},{"id":"T7988","span":{"begin":1722,"end":1726},"obj":"NCBITaxon:10088"},{"id":"T7987","span":{"begin":1695,"end":1709},"obj":"CHEBI:17387"},{"id":"T7986","span":{"begin":1690,"end":1694},"obj":"UBERON:0001970"},{"id":"T7985","span":{"begin":1533,"end":1537},"obj":"NCBITaxon:10088"},{"id":"T7984","span":{"begin":1531,"end":1532},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T7983","span":{"begin":1529,"end":1530},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T7982","span":{"begin":1525,"end":1529},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T7981","span":{"begin":1487,"end":1500},"obj":"CHEBI:17387"},{"id":"T7980","span":{"begin":1438,"end":1442},"obj":"NCBITaxon:10088"},{"id":"T7979","span":{"begin":1436,"end":1437},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T7978","span":{"begin":1434,"end":1435},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T7977","span":{"begin":1430,"end":1434},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T7976","span":{"begin":1416,"end":1417},"obj":"SO_EXT:normal_or_wild_type_or_present"},{"id":"T7975","span":{"begin":1414,"end":1415},"obj":"SO_EXT:normal_or_wild_type_or_present"},{"id":"T7974","span":{"begin":1410,"end":1414},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T7973","span":{"begin":1384,"end":1397},"obj":"CHEBI:17387"},{"id":"T7972","span":{"begin":1378,"end":1383},"obj":"UBERON:0001977"},{"id":"T7971","span":{"begin":1351,"end":1364},"obj":"CHEBI:17387"},{"id":"T3291","span":{"begin":1326,"end":1339},"obj":"CHEBI:17387"},{"id":"T3290","span":{"begin":1307,"end":1312},"obj":"NCBITaxon:10088"},{"id":"T3262","span":{"begin":767,"end":771},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T3261","span":{"begin":761,"end":762},"obj":"SO_EXT:normal_or_wild_type_or_present"},{"id":"T3260","span":{"begin":759,"end":760},"obj":"SO_EXT:normal_or_wild_type_or_present"},{"id":"T3259","span":{"begin":755,"end":759},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T3258","span":{"begin":722,"end":731},"obj":"CHEBI:17126"},{"id":"T3257","span":{"begin":716,"end":721},"obj":"UBERON:0001977"},{"id":"T3256","span":{"begin":666,"end":670},"obj":"NCBITaxon:10088"},{"id":"T3255","span":{"begin":664,"end":665},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T3254","span":{"begin":662,"end":663},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T3253","span":{"begin":658,"end":662},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T3252","span":{"begin":652,"end":653},"obj":"SO_EXT:normal_or_wild_type_or_present"},{"id":"T3251","span":{"begin":650,"end":651},"obj":"SO_EXT:normal_or_wild_type_or_present"},{"id":"T3250","span":{"begin":646,"end":650},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T3249","span":{"begin":604,"end":613},"obj":"SO_EXT:genotype_or_entity_with_genotype"},{"id":"T3248","span":{"begin":599,"end":603},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T3247","span":{"begin":527,"end":538},"obj":"CHEBI:15344"},{"id":"T3246","span":{"begin":506,"end":522},"obj":"CHEBI:20067"},{"id":"T3245","span":{"begin":471,"end":475},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T3244","span":{"begin":440,"end":451},"obj":"CHEBI:30832"},{"id":"T3243","span":{"begin":415,"end":428},"obj":"CHEBI:64709"},{"id":"T3242","span":{"begin":347,"end":348},"obj":"SO_EXT:normal_or_wild_type_or_present"},{"id":"T3241","span":{"begin":345,"end":346},"obj":"SO_EXT:normal_or_wild_type_or_present"},{"id":"T3240","span":{"begin":341,"end":345},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T3239","span":{"begin":310,"end":325},"obj":"CHEBI:64390"},{"id":"T3238","span":{"begin":292,"end":305},"obj":"CHEBI:41865"},{"id":"T3237","span":{"begin":300,"end":305},"obj":"CHEBI:9300"},{"id":"T3236","span":{"begin":279,"end":286},"obj":"_FRAGMENT"},{"id":"T3235","span":{"begin":300,"end":305},"obj":"CHEBI:30832"},{"id":"T3234","span":{"begin":271,"end":277},"obj":"_FRAGMENT"},{"id":"T3233","span":{"begin":215,"end":219},"obj":"NCBITaxon:10088"},{"id":"T3232","span":{"begin":213,"end":214},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T3231","span":{"begin":211,"end":212},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T3230","span":{"begin":207,"end":211},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T3229","span":{"begin":155,"end":160},"obj":"NCBITaxon:9606"},{"id":"T3228","span":{"begin":140,"end":144},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T3227","span":{"begin":108,"end":120},"obj":"CHEBI:64709"},{"id":"T3226","span":{"begin":90,"end":94},"obj":"NCBITaxon:10088"},{"id":"T3225","span":{"begin":88,"end":89},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T3224","span":{"begin":86,"end":87},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T3223","span":{"begin":82,"end":86},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T3222","span":{"begin":46,"end":58},"obj":"CHEBI:64709"},{"id":"T3221","span":{"begin":40,"end":45},"obj":"UBERON:0001088"},{"id":"T3220","span":{"begin":17,"end":30},"obj":"CHEBI:17387"},{"id":"T3219","span":{"begin":0,"end":12},"obj":"CHEBI:64709"},{"id":"T3289","span":{"begin":1284,"end":1290},"obj":"NCBITaxon:9606"},{"id":"T3288","span":{"begin":1267,"end":1280},"obj":"CHEBI:17387"},{"id":"T3287","span":{"begin":1224,"end":1228},"obj":"NCBITaxon:10088"},{"id":"T3286","span":{"begin":1217,"end":1223},"obj":"SO_EXT:sequence_altered_entity_or_alteration_process"},{"id":"T3285","span":{"begin":1190,"end":1204},"obj":"CHEBI:17387"},{"id":"T3284","span":{"begin":1125,"end":1130},"obj":"NCBITaxon:9606"},{"id":"T3283","span":{"begin":1088,"end":1092},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T3282","span":{"begin":1082,"end":1087},"obj":"NCBITaxon:9606"},{"id":"T3281","span":{"begin":1049,"end":1053},"obj":"NCBITaxon:10088"},{"id":"T3280","span":{"begin":1047,"end":1048},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T3268","span":{"begin":791,"end":792},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T3267","span":{"begin":789,"end":790},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T3266","span":{"begin":785,"end":789},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T3265","span":{"begin":775,"end":779},"obj":"NCBITaxon:10088"},{"id":"T3264","span":{"begin":773,"end":774},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T3263","span":{"begin":771,"end":772},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T3279","span":{"begin":1045,"end":1046},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T3278","span":{"begin":1041,"end":1045},"obj":"GO_PR_EXT:medium_chain_acyl_CoA_dehydrogenase"},{"id":"T3277","span":{"begin":1011,"end":1024},"obj":"CHEBI:17387"},{"id":"T3276","span":{"begin":979,"end":984},"obj":"UBERON:0001977"},{"id":"T3275","span":{"begin":951,"end":964},"obj":"CHEBI:17387"},{"id":"T3274","span":{"begin":909,"end":922},"obj":"CHEBI:17387"},{"id":"T3273","span":{"begin":904,"end":908},"obj":"UBERON:0001970"},{"id":"T3272","span":{"begin":869,"end":882},"obj":"CHEBI:17387"},{"id":"T3271","span":{"begin":836,"end":853},"obj":"CHEBI:86063"},{"id":"T3270","span":{"begin":830,"end":835},"obj":"UBERON:0001977"},{"id":"T3269","span":{"begin":793,"end":797},"obj":"NCBITaxon:10088"}],"relations":[{"id":"R2068","pred":"_lexicallyChainedTo","subj":"T3235","obj":"T3234"},{"id":"R2069","pred":"_lexicallyChainedTo","subj":"T3237","obj":"T3236"}],"text":"Organic Acid and Acylcarnitine Analysis\nUrine organic acid analysis revealed that MCAD−/− mice developed an organic acid profile similar to MCAD-deficient human patients. Specifically, when fasted for 18 h, MCAD−/− mice developed significantly elevated concentrations of adipic, suberic, and sebacic acids and hexanoylglycine as compared to MCAD+/+ controls, which showed trace to no detectable amounts of the same organic acids (Table 1). Adipic acid is not specific to MCAD deficiency. We also evaluated β-hydroxybutyric and acetoacetic concentrations and found no significant differences between MCAD genotypes (data not shown).\nComparison of MCAD+/+ and MCAD−/− mice revealed no significant differences in total serum carnitine concentrations between MCAD+/+ and MCAD−/− mice, but MCAD−/− mice had a 5- to 6-fold elevation of serum decenoylcarnitine evident in the acylcarnitine profile (Figure 4A). Bile acylcarnitine analysis revealed a similar acylcarnitine pattern as in serum (Figure 4B). However, the acylcarnitine profiles of the MCAD−/− mice are different from those of human MCAD-deficient patients (Figure 4C). Human patients present with elevated levels of C6, C8, and C10:1 acylcarnitines, as did the mutant mice; however, the predominant peak was C8 acylcarnitine in humans, whereas in the mouse it was C10:1 acylcarnitine.\nFigure 4 Acylcarnitine Analyses\n(A) Serum acylcarnitine analysis of MCAD+/+ (n = 4) and MCAD−/− mice (n = 4)\nThere are significant elevations in acylcarnitine species as indicated in MCAD−/− mice. Values shown are mean values ± standard deviation (SD). Asterisk indicates p \u003c 0.002 and ‡ indicates p \u003c 0.01.\n(B) There are significant elevations in bile acylcarnitines of the same mice shown in (A) as indicated. Values shown are mean values ± SD. Asterisk indicates p \u003c 0.001.\n(C) Bile acylcarnitine profile of an MCAD−/− mouse compared to a human patient with MCAD deficiency. Internal standards are indicated by an asterisk."}