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PMC:1189073 / 38001-38982 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T19567 0-6 UBERON:0002113 denotes Kidney
T19568 35-40 NCBITaxon:10088 denotes mouse
T19569 41-48 UBERON:0002113 denotes kidneys
T19570 67-76 CHEBI_EXT:phosphate denotes phosphate
T19571 77-85 CHEBI_CHMO_EXT:buffer_process denotes buffered
T19572 86-94 CHEBI:16842 denotes formalin
T19573 105-112 UBERON:0002113 denotes Kidneys
T19574 183-190 CHEBI_EXT:59132 denotes antigen
T19575 213-227 CHEBI:53258 denotes sodium citrate
T19576 301-305 PR_EXT:000004183 denotes AQP3
T19577 319-323 PR_EXT:000004182 denotes AQP2
T19578 355-361 NCBITaxon:9793 denotes donkey
T19579 362-367 UBERON:0001977 denotes serum
T19580 380-384 NCBITaxon:9925 denotes goat
T19581 390-394 PR_EXT:000004183 denotes AQP3
T19582 395-403 GO:0042571 denotes antibody
T19583 496-510 CHEBI:52661 denotes AlexaFluor 488
T19584 511-521 MOP:0000779 denotes conjugated
T19585 522-528 NCBITaxon:9793 denotes donkey
T19586 534-538 NCBITaxon:9925 denotes goat
T19587 539-547 GO:0042571 denotes antibody
T19588 549-558 CHEBI_EXT:polyatomic_entity_or_group denotes Molecular
T19589 559-565 CHEBI_SO_EXT:molecular_probe denotes Probes
T19590 642-649 NCBITaxon:9031 denotes chicken
T19591 650-655 UBERON:0001977 denotes serum
T19592 674-680 NCBITaxon:9986 denotes rabbit
T19593 686-690 PR_EXT:000004182 denotes AQP2
T19594 691-699 GO:0042571 denotes antibody
T19595 783-797 CHEBI:51248 denotes AlexaFluor 594
T19596 798-808 MOP:0000779 denotes conjugated
T19597 809-816 NCBITaxon:9031 denotes chicken
T19598 822-828 NCBITaxon:9986 denotes rabbit
T19599 829-837 GO:0042571 denotes antibody
T19600 846-855 CHEBI_EXT:polyatomic_entity_or_group denotes Molecular
T19601 856-862 CHEBI_SO_EXT:molecular_probe denotes Probes
T19602 896-900 CHEBI:51231 denotes DAPI

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T19537 0-6 UBERON:0002113 denotes Kidney
T19538 35-40 NCBITaxon:10088 denotes mouse
T19539 41-48 UBERON:0002113 denotes kidneys
T19540 86-94 CHEBI:16842 denotes formalin
T19541 105-112 UBERON:0002113 denotes Kidneys
T19542 183-190 CHEBI:59132 denotes antigen
T19543 213-227 CHEBI:53258 denotes sodium citrate
T19544 301-305 PR:000004183 denotes AQP3
T19545 319-323 PR:000004182 denotes AQP2
T19546 355-361 NCBITaxon:9793 denotes donkey
T19547 362-367 UBERON:0001977 denotes serum
T19548 380-384 NCBITaxon:9925 denotes goat
T19549 390-394 PR:000004183 denotes AQP3
T19550 395-403 GO:0042571 denotes antibody
T19551 496-510 CHEBI:52661 denotes AlexaFluor 488
T19552 511-521 MOP:0000779 denotes conjugated
T19553 522-528 NCBITaxon:9793 denotes donkey
T19554 534-538 NCBITaxon:9925 denotes goat
T19555 539-547 GO:0042571 denotes antibody
T19556 642-649 NCBITaxon:9031 denotes chicken
T19557 650-655 UBERON:0001977 denotes serum
T19558 674-680 NCBITaxon:9986 denotes rabbit
T19559 686-690 PR:000004182 denotes AQP2
T19560 691-699 GO:0042571 denotes antibody
T19561 783-797 CHEBI:51248 denotes AlexaFluor 594
T19562 798-808 MOP:0000779 denotes conjugated
T19563 809-816 NCBITaxon:9031 denotes chicken
T19564 822-828 NCBITaxon:9986 denotes rabbit
T19565 829-837 GO:0042571 denotes antibody
T19566 896-900 CHEBI:51231 denotes DAPI

craft-sa-dev

Id Subject Object Predicate Lexical cue
T19603 0-6 NN denotes Kidney
T19604 7-27 NN denotes immunohistochemistry
T19605 27-28 . denotes .
T19606 28-104 sentence denotes Whole mouse kidneys were fixed in 10% phosphate-buffered formalin for 24 h.
T19607 29-34 JJ denotes Whole
T19608 41-48 NNS denotes kidneys
T19609 35-40 NN denotes mouse
T19610 54-59 VBN denotes fixed
T19611 49-53 VBD denotes were
T19612 60-62 IN denotes in
T19613 63-65 CD denotes 10
T19614 65-66 NN denotes %
T19615 86-94 NN denotes formalin
T19616 67-76 NN denotes phosphate
T19617 77-85 VBN denotes buffered
T19618 76-77 HYPH denotes -
T19619 95-98 IN denotes for
T19620 99-101 CD denotes 24
T19621 102-103 NN denotes h
T19622 103-104 . denotes .
T19623 104-172 sentence denotes Kidneys were embedded in paraffin, and 5-μm sections were prepared.
T19624 105-112 NNS denotes Kidneys
T19625 118-126 VBN denotes embedded
T19626 113-117 VBD denotes were
T19627 127-129 IN denotes in
T19628 130-138 NN denotes paraffin
T19629 138-140 , denotes ,
T19630 140-143 CC denotes and
T19631 144-145 CD denotes 5
T19632 146-148 NN denotes μm
T19633 145-146 HYPH denotes -
T19634 149-157 NNS denotes sections
T19635 163-171 VBN denotes prepared
T19636 158-162 VBD denotes were
T19637 171-172 . denotes .
T19638 172-324 sentence denotes Following antigen retrieval using 10 mM sodium citrate (pH 8) for 10 min at 98 °C, sections were sequentially probed, first for AQP3 and then for AQP2.
T19639 173-182 VBG denotes Following
T19640 283-289 VBN denotes probed
T19641 183-190 NN denotes antigen
T19642 191-200 NN denotes retrieval
T19643 201-206 VBG denotes using
T19644 207-209 CD denotes 10
T19645 210-212 NN denotes mM
T19646 220-227 NN denotes citrate
T19647 213-219 NN denotes sodium
T19648 228-229 -LRB- denotes (
T19649 229-231 NN denotes pH
T19650 232-233 CD denotes 8
T19651 233-234 -RRB- denotes )
T19652 235-238 IN denotes for
T19653 239-241 CD denotes 10
T19654 242-245 NN denotes min
T19655 246-248 IN denotes at
T19656 249-251 CD denotes 98
T19657 252-254 NN denotes °C
T19658 254-256 , denotes ,
T19659 256-264 NNS denotes sections
T19660 265-269 VBD denotes were
T19661 270-282 RB denotes sequentially
T19662 289-291 , denotes ,
T19663 291-296 RB denotes first
T19664 297-300 IN denotes for
T19665 301-305 NN denotes AQP3
T19666 306-309 CC denotes and
T19667 310-314 RB denotes then
T19668 315-318 IN denotes for
T19669 319-323 NN denotes AQP2
T19670 323-324 . denotes .
T19671 324-448 sentence denotes Sections were incubated in 5% donkey serum and then in goat anti-AQP3 antibody (1:100; Santa Cruz Biotechnology; #sc-9885).
T19672 325-333 NNS denotes Sections
T19673 339-348 VBN denotes incubated
T19674 334-338 VBD denotes were
T19675 349-351 IN denotes in
T19676 352-353 CD denotes 5
T19677 353-354 NN denotes %
T19678 362-367 NN denotes serum
T19679 355-361 NN denotes donkey
T19680 368-371 CC denotes and
T19681 372-376 RB denotes then
T19682 377-379 IN denotes in
T19683 380-384 NN denotes goat
T19684 395-403 NN denotes antibody
T19685 385-394 JJ denotes anti-AQP3
T19686 404-405 -LRB- denotes (
T19687 439-441 NN denotes sc
T19688 405-406 CD denotes 1
T19689 406-407 SYM denotes :
T19690 407-410 CD denotes 100
T19691 410-411 : denotes ;
T19692 412-417 NNP denotes Santa
T19693 418-422 NNP denotes Cruz
T19694 423-436 NNP denotes Biotechnology
T19695 436-437 : denotes ;
T19696 438-439 SYM denotes #
T19697 441-442 HYPH denotes -
T19698 442-446 CD denotes 9885
T19699 446-447 -RRB- denotes )
T19700 447-448 . denotes .
T19701 448-598 sentence denotes Slides were washed with PBS and incubated with AlexaFluor 488-conjugated donkey anti-goat antibody (Molecular Probes, Eugene, Oregon, United States).
T19702 449-455 NNS denotes Slides
T19703 461-467 VBN denotes washed
T19704 456-460 VBD denotes were
T19705 468-472 IN denotes with
T19706 473-476 NN denotes PBS
T19707 477-480 CC denotes and
T19708 481-490 VBN denotes incubated
T19709 491-495 IN denotes with
T19710 496-506 NNP denotes AlexaFluor
T19711 511-521 VBN denotes conjugated
T19712 507-510 CD denotes 488
T19713 510-511 HYPH denotes -
T19714 539-547 NN denotes antibody
T19715 522-528 NN denotes donkey
T19716 529-538 JJ denotes anti-goat
T19717 548-549 -LRB- denotes (
T19718 559-565 NNP denotes Probes
T19719 549-558 NNP denotes Molecular
T19720 565-567 , denotes ,
T19721 567-573 NNP denotes Eugene
T19722 573-575 , denotes ,
T19723 575-581 NNP denotes Oregon
T19724 581-583 , denotes ,
T19725 583-589 NNP denotes United
T19726 590-596 NNP denotes States
T19727 596-597 -RRB- denotes )
T19728 597-598 . denotes .
T19729 598-864 sentence denotes The slides were subsequently blocked in 5% chicken serum, incubated with a rabbit anti-AQP2 antibody (1:250; USB, Cleveland, Ohio, United States; #A3000–06), which was detected with a AlexaFluor 594-conjugated chicken anti-rabbit antibody (1:500; Molecular Probes).
T19730 599-602 DT denotes The
T19731 603-609 NNS denotes slides
T19732 657-666 VBN denotes incubated
T19733 610-614 VBD denotes were
T19734 615-627 RB denotes subsequently
T19735 628-635 VBN denotes blocked
T19736 636-638 IN denotes in
T19737 639-640 CD denotes 5
T19738 640-641 NN denotes %
T19739 650-655 NN denotes serum
T19740 642-649 NN denotes chicken
T19741 655-657 , denotes ,
T19742 667-671 IN denotes with
T19743 672-673 DT denotes a
T19744 691-699 NN denotes antibody
T19745 674-680 NN denotes rabbit
T19746 681-690 JJ denotes anti-AQP2
T19747 700-701 -LRB- denotes (
T19748 746-751 NN denotes A3000
T19749 701-702 CD denotes 1
T19750 702-703 SYM denotes :
T19751 703-706 CD denotes 250
T19752 706-707 : denotes ;
T19753 708-711 NNP denotes USB
T19754 711-713 , denotes ,
T19755 713-722 NNP denotes Cleveland
T19756 722-724 , denotes ,
T19757 724-728 NNP denotes Ohio
T19758 728-730 , denotes ,
T19759 730-736 NNP denotes United
T19760 737-743 NNP denotes States
T19761 743-744 : denotes ;
T19762 745-746 SYM denotes #
T19763 751-752 HYPH denotes –
T19764 752-754 CD denotes 06
T19765 754-755 -RRB- denotes )
T19766 755-757 , denotes ,
T19767 757-762 WDT denotes which
T19768 767-775 VBN denotes detected
T19769 763-766 VBD denotes was
T19770 776-780 IN denotes with
T19771 781-782 DT denotes a
T19772 829-837 NN denotes antibody
T19773 783-793 NNP denotes AlexaFluor
T19774 798-808 VBN denotes conjugated
T19775 794-797 CD denotes 594
T19776 797-798 HYPH denotes -
T19777 809-816 NN denotes chicken
T19778 817-828 JJ denotes anti-rabbit
T19779 838-839 -LRB- denotes (
T19780 856-862 NNP denotes Probes
T19781 839-840 CD denotes 1
T19782 840-841 SYM denotes :
T19783 841-844 CD denotes 500
T19784 844-845 : denotes ;
T19785 846-855 NNP denotes Molecular
T19786 862-863 -RRB- denotes )
T19787 863-864 . denotes .
T19788 864-981 sentence denotes The sections were stained with DAPI and mounted in Vectashield (Vector Labs, Burlingame, California, United States).
T19789 865-868 DT denotes The
T19790 869-877 NNS denotes sections
T19791 883-890 VBN denotes stained
T19792 878-882 VBD denotes were
T19793 891-895 IN denotes with
T19794 896-900 NN denotes DAPI
T19795 901-904 CC denotes and
T19796 905-912 VBD denotes mounted
T19797 913-915 IN denotes in
T19798 916-927 NNP denotes Vectashield
T19799 928-929 -LRB- denotes (
T19800 936-940 NNP denotes Labs
T19801 929-935 NNP denotes Vector
T19802 940-942 , denotes ,
T19803 942-952 NNP denotes Burlingame
T19804 952-954 , denotes ,
T19805 954-964 NNP denotes California
T19806 964-966 , denotes ,
T19807 966-972 NNP denotes United
T19808 973-979 NNP denotes States
T19809 979-980 -RRB- denotes )
T19810 980-981 . denotes .
R5640 T19603 T19604 compound Kidney,immunohistochemistry
R5641 T19605 T19604 punct .,immunohistochemistry
R5642 T19607 T19608 amod Whole,kidneys
R5643 T19608 T19610 nsubjpass kidneys,fixed
R5644 T19609 T19608 compound mouse,kidneys
R5645 T19611 T19610 auxpass were,fixed
R5646 T19612 T19610 prep in,fixed
R5647 T19613 T19614 nummod 10,%
R5648 T19614 T19615 nmod %,formalin
R5649 T19615 T19612 pobj formalin,in
R5650 T19616 T19617 npadvmod phosphate,buffered
R5651 T19617 T19615 amod buffered,formalin
R5652 T19618 T19617 punct -,buffered
R5653 T19619 T19610 prep for,fixed
R5654 T19620 T19621 nummod 24,h
R5655 T19621 T19619 pobj h,for
R5656 T19622 T19610 punct .,fixed
R5657 T19624 T19625 nsubjpass Kidneys,embedded
R5658 T19626 T19625 auxpass were,embedded
R5659 T19627 T19625 prep in,embedded
R5660 T19628 T19627 pobj paraffin,in
R5661 T19629 T19625 punct ", ",embedded
R5662 T19630 T19625 cc and,embedded
R5663 T19631 T19632 nummod 5,μm
R5664 T19632 T19634 compound μm,sections
R5665 T19633 T19632 punct -,μm
R5666 T19634 T19635 nsubjpass sections,prepared
R5667 T19635 T19625 conj prepared,embedded
R5668 T19636 T19635 auxpass were,prepared
R5669 T19637 T19635 punct .,prepared
R5670 T19639 T19640 prep Following,probed
R5671 T19641 T19642 compound antigen,retrieval
R5672 T19642 T19639 pobj retrieval,Following
R5673 T19643 T19642 acl using,retrieval
R5674 T19644 T19645 nummod 10,mM
R5675 T19645 T19646 compound mM,citrate
R5676 T19646 T19643 dobj citrate,using
R5677 T19647 T19646 compound sodium,citrate
R5678 T19648 T19646 punct (,citrate
R5679 T19649 T19646 npadvmod pH,citrate
R5680 T19650 T19649 nummod 8,pH
R5681 T19651 T19646 punct ),citrate
R5682 T19652 T19643 prep for,using
R5683 T19653 T19654 nummod 10,min
R5684 T19654 T19652 pobj min,for
R5685 T19655 T19643 prep at,using
R5686 T19656 T19657 nummod 98,°C
R5687 T19657 T19655 pobj °C,at
R5688 T19658 T19640 punct ", ",probed
R5689 T19659 T19640 nsubjpass sections,probed
R5690 T19660 T19640 auxpass were,probed
R5691 T19661 T19640 advmod sequentially,probed
R5692 T19662 T19640 punct ", ",probed
R5693 T19663 T19664 advmod first,for
R5694 T19664 T19640 prep for,probed
R5695 T19665 T19664 pobj AQP3,for
R5696 T19666 T19664 cc and,for
R5697 T19667 T19668 advmod then,for
R5698 T19668 T19664 conj for,for
R5699 T19669 T19668 pobj AQP2,for
R5700 T19670 T19640 punct .,probed
R5701 T19672 T19673 nsubjpass Sections,incubated
R5702 T19674 T19673 auxpass were,incubated
R5703 T19675 T19673 prep in,incubated
R5704 T19676 T19677 nummod 5,%
R5705 T19677 T19678 compound %,serum
R5706 T19678 T19675 pobj serum,in
R5707 T19679 T19678 compound donkey,serum
R5708 T19680 T19673 cc and,incubated
R5709 T19681 T19682 advmod then,in
R5710 T19682 T19673 conj in,incubated
R5711 T19683 T19684 nmod goat,antibody
R5712 T19684 T19682 pobj antibody,in
R5713 T19685 T19684 amod anti-AQP3,antibody
R5714 T19686 T19687 punct (,sc
R5715 T19687 T19684 parataxis sc,antibody
R5716 T19688 T19687 dep 1,sc
R5717 T19689 T19690 punct :,100
R5718 T19690 T19688 prep 100,1
R5719 T19691 T19687 punct ;,sc
R5720 T19692 T19693 compound Santa,Cruz
R5721 T19693 T19694 compound Cruz,Biotechnology
R5722 T19694 T19687 dep Biotechnology,sc
R5723 T19695 T19687 punct ;,sc
R5724 T19696 T19687 punct #,sc
R5725 T19697 T19687 punct -,sc
R5726 T19698 T19687 nummod 9885,sc
R5727 T19699 T19687 punct ),sc
R5728 T19700 T19673 punct .,incubated
R5729 T19702 T19703 nsubjpass Slides,washed
R5730 T19704 T19703 auxpass were,washed
R5731 T19705 T19703 prep with,washed
R5732 T19706 T19705 pobj PBS,with
R5733 T19707 T19703 cc and,washed
R5734 T19708 T19703 conj incubated,washed
R5735 T19709 T19708 prep with,incubated
R5736 T19710 T19711 npadvmod AlexaFluor,conjugated
R5737 T19711 T19714 amod conjugated,antibody
R5738 T19712 T19710 nummod 488,AlexaFluor
R5739 T19713 T19711 punct -,conjugated
R5740 T19714 T19709 pobj antibody,with
R5741 T19715 T19714 nmod donkey,antibody
R5742 T19716 T19714 amod anti-goat,antibody
R5743 T19717 T19718 punct (,Probes
R5744 T19718 T19714 parataxis Probes,antibody
R5745 T19719 T19718 compound Molecular,Probes
R5746 T19720 T19718 punct ", ",Probes
R5747 T19721 T19718 npadvmod Eugene,Probes
R5748 T19722 T19718 punct ", ",Probes
R5749 T19723 T19718 npadvmod Oregon,Probes
R5750 T19724 T19718 punct ", ",Probes
R5751 T19725 T19726 compound United,States
R5752 T19726 T19718 npadvmod States,Probes
R5753 T19727 T19718 punct ),Probes
R5754 T19728 T19703 punct .,washed
R5755 T19730 T19731 det The,slides
R5756 T19731 T19732 nsubjpass slides,incubated
R5757 T19733 T19732 auxpass were,incubated
R5758 T19734 T19732 advmod subsequently,incubated
R5759 T19735 T19732 aux blocked,incubated
R5760 T19736 T19732 prep in,incubated
R5761 T19737 T19738 nummod 5,%
R5762 T19738 T19739 compound %,serum
R5763 T19739 T19736 pobj serum,in
R5764 T19740 T19739 compound chicken,serum
R5765 T19741 T19732 punct ", ",incubated
R5766 T19742 T19732 prep with,incubated
R5767 T19743 T19744 det a,antibody
R5768 T19744 T19742 pobj antibody,with
R5769 T19745 T19744 nmod rabbit,antibody
R5770 T19746 T19744 amod anti-AQP2,antibody
R5771 T19747 T19748 punct (,A3000
R5772 T19748 T19744 parataxis A3000,antibody
R5773 T19749 T19748 dep 1,A3000
R5774 T19750 T19751 punct :,250
R5775 T19751 T19749 prep 250,1
R5776 T19752 T19748 punct ;,A3000
R5777 T19753 T19748 dep USB,A3000
R5778 T19754 T19753 punct ", ",USB
R5779 T19755 T19753 npadvmod Cleveland,USB
R5780 T19756 T19753 punct ", ",USB
R5781 T19757 T19753 npadvmod Ohio,USB
R5782 T19758 T19753 punct ", ",USB
R5783 T19759 T19760 compound United,States
R5784 T19760 T19753 npadvmod States,USB
R5785 T19761 T19748 punct ;,A3000
R5786 T19762 T19748 punct #,A3000
R5787 T19763 T19748 punct –,A3000
R5788 T19764 T19748 nummod 06,A3000
R5789 T19765 T19748 punct ),A3000
R5790 T19766 T19744 punct ", ",antibody
R5791 T19767 T19768 dep which,detected
R5792 T19768 T19744 relcl detected,antibody
R5793 T19769 T19768 auxpass was,detected
R5794 T19770 T19768 prep with,detected
R5795 T19771 T19772 det a,antibody
R5796 T19772 T19770 pobj antibody,with
R5797 T19773 T19774 npadvmod AlexaFluor,conjugated
R5798 T19774 T19772 amod conjugated,antibody
R5799 T19775 T19773 nummod 594,AlexaFluor
R5800 T19776 T19774 punct -,conjugated
R5801 T19777 T19772 nmod chicken,antibody
R5802 T19778 T19772 amod anti-rabbit,antibody
R5803 T19779 T19780 punct (,Probes
R5804 T19780 T19772 parataxis Probes,antibody
R5805 T19781 T19780 dep 1,Probes
R5806 T19782 T19783 punct :,500
R5807 T19783 T19781 prep 500,1
R5808 T19784 T19780 punct ;,Probes
R5809 T19785 T19780 compound Molecular,Probes
R5810 T19786 T19780 punct ),Probes
R5811 T19787 T19732 punct .,incubated
R5812 T19789 T19790 det The,sections
R5813 T19790 T19791 nsubjpass sections,stained
R5814 T19792 T19791 auxpass were,stained
R5815 T19793 T19791 prep with,stained
R5816 T19794 T19793 pobj DAPI,with
R5817 T19795 T19791 cc and,stained
R5818 T19796 T19791 conj mounted,stained
R5819 T19797 T19796 prep in,mounted
R5820 T19798 T19797 pobj Vectashield,in
R5821 T19799 T19800 punct (,Labs
R5822 T19800 T19796 parataxis Labs,mounted
R5823 T19801 T19800 compound Vector,Labs
R5824 T19802 T19800 punct ", ",Labs
R5825 T19803 T19800 npadvmod Burlingame,Labs
R5826 T19804 T19800 punct ", ",Labs
R5827 T19805 T19800 npadvmod California,Labs
R5828 T19806 T19800 punct ", ",Labs
R5829 T19807 T19808 compound United,States
R5830 T19808 T19800 npadvmod States,Labs
R5831 T19809 T19800 punct ),Labs
R5832 T19810 T19791 punct .,stained