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PMC:1186732 / 6099-6689 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1414 0-2 IN denotes In
T1415 73-81 VBN denotes compared
T1416 3-5 DT denotes an
T1417 14-22 NN denotes analysis
T1418 6-13 JJ denotes initial
T1419 23-25 IN denotes of
T1420 26-29 DT denotes the
T1421 34-40 NN denotes mutant
T1422 30-33 NN denotes rd7
T1423 40-42 , denotes ,
T1424 42-52 JJ denotes homozygous
T1425 60-67 NNS denotes retinas
T1426 53-59 NN denotes mutant
T1427 68-72 VBD denotes were
T1428 82-86 IN denotes with
T1429 87-91 JJ denotes wild
T1430 92-96 NN denotes type
T1431 91-92 HYPH denotes -
T1432 97-105 NNS denotes controls
T1433 106-108 IN denotes at
T1434 109-117 JJ denotes multiple
T1435 133-139 NNS denotes points
T1436 118-127 JJ denotes postnatal
T1437 128-132 NN denotes time
T1438 140-145 VBG denotes using
T1439 146-150 CC denotes both
T1440 151-155 NN denotes cDNA
T1441 156-159 CC denotes and
T1442 160-170 NNP denotes Affymetrix
T1443 171-182 NNS denotes microarrays
T1444 182-183 . denotes .
T1445 183-378 sentence denotes The cDNA microarray used in this study contains approximately 12,000 different cDNAs largely derived from the retina and nervous system, and the Affymetrix microarray contains over 34,000 genes.
T1446 184-187 DT denotes The
T1447 193-203 NN denotes microarray
T1448 188-192 NN denotes cDNA
T1449 223-231 VBZ denotes contains
T1450 204-208 VBN denotes used
T1451 209-211 IN denotes in
T1452 212-216 DT denotes this
T1453 217-222 NN denotes study
T1454 232-245 RB denotes approximately
T1455 246-252 CD denotes 12,000
T1456 263-268 NNS denotes cDNAs
T1457 253-262 JJ denotes different
T1458 269-276 RB denotes largely
T1459 277-284 VBN denotes derived
T1460 285-289 IN denotes from
T1461 290-293 DT denotes the
T1462 294-300 NN denotes retina
T1463 301-304 CC denotes and
T1464 305-312 JJ denotes nervous
T1465 313-319 NN denotes system
T1466 319-321 , denotes ,
T1467 321-324 CC denotes and
T1468 325-328 DT denotes the
T1469 340-350 NN denotes microarray
T1470 329-339 NNP denotes Affymetrix
T1471 351-359 VBZ denotes contains
T1472 360-364 IN denotes over
T1473 365-371 CD denotes 34,000
T1474 372-377 NNS denotes genes
T1475 377-378 . denotes .
T1476 378-590 sentence denotes Experiments at all timepoints were carried out in triplicate, and stringent criteria were applied in deciding whether a given gene was up- or down-regulated in the mutant (see Materials and Methods for details).
T1477 379-390 NNS denotes Experiments
T1478 414-421 VBN denotes carried
T1479 391-393 IN denotes at
T1480 394-397 DT denotes all
T1481 398-408 NNS denotes timepoints
T1482 409-413 VBD denotes were
T1483 422-425 RP denotes out
T1484 426-428 IN denotes in
T1485 429-439 NN denotes triplicate
T1486 439-441 , denotes ,
T1487 441-444 CC denotes and
T1488 445-454 JJ denotes stringent
T1489 455-463 NNS denotes criteria
T1490 469-476 VBN denotes applied
T1491 464-468 VBD denotes were
T1492 477-479 IN denotes in
T1493 480-488 VBG denotes deciding
T1494 489-496 IN denotes whether
T1495 526-535 VBN denotes regulated
T1496 497-498 DT denotes a
T1497 505-509 NN denotes gene
T1498 499-504 VBN denotes given
T1499 510-513 VBD denotes was
T1500 514-516 RB denotes up
T1501 516-517 HYPH denotes -
T1502 518-520 CC denotes or
T1503 521-525 RB denotes down
T1504 525-526 HYPH denotes -
T1505 536-538 IN denotes in
T1506 539-542 DT denotes the
T1507 543-549 NN denotes mutant
T1508 550-551 -LRB- denotes (
T1509 551-554 VB denotes see
T1510 555-564 NNS denotes Materials
T1511 565-568 CC denotes and
T1512 569-576 NNS denotes Methods
T1513 577-580 IN denotes for
T1514 581-588 NNS denotes details
T1515 588-589 -RRB- denotes )
T1516 589-590 . denotes .
R845 T1414 T1415 prep In,compared
R846 T1416 T1417 det an,analysis
R847 T1417 T1414 pobj analysis,In
R848 T1418 T1417 amod initial,analysis
R849 T1419 T1417 prep of,analysis
R850 T1420 T1421 det the,mutant
R851 T1421 T1419 pobj mutant,of
R852 T1422 T1421 compound rd7,mutant
R853 T1423 T1415 punct ", ",compared
R854 T1424 T1425 amod homozygous,retinas
R855 T1425 T1415 nsubjpass retinas,compared
R856 T1426 T1425 compound mutant,retinas
R857 T1427 T1415 auxpass were,compared
R858 T1428 T1415 prep with,compared
R859 T1429 T1430 amod wild,type
R860 T1430 T1432 compound type,controls
R861 T1431 T1430 punct -,type
R862 T1432 T1428 pobj controls,with
R863 T1433 T1415 prep at,compared
R864 T1434 T1435 amod multiple,points
R865 T1435 T1433 pobj points,at
R866 T1436 T1435 amod postnatal,points
R867 T1437 T1435 compound time,points
R868 T1438 T1415 advcl using,compared
R869 T1439 T1440 preconj both,cDNA
R870 T1440 T1438 dobj cDNA,using
R871 T1441 T1440 cc and,cDNA
R872 T1442 T1443 compound Affymetrix,microarrays
R873 T1443 T1440 conj microarrays,cDNA
R874 T1444 T1415 punct .,compared
R875 T1446 T1447 det The,microarray
R876 T1447 T1449 nsubj microarray,contains
R877 T1448 T1447 compound cDNA,microarray
R878 T1450 T1447 acl used,microarray
R879 T1451 T1450 prep in,used
R880 T1452 T1453 det this,study
R881 T1453 T1451 pobj study,in
R882 T1454 T1455 advmod approximately,"12,000"
R883 T1455 T1456 nummod "12,000",cDNAs
R884 T1456 T1449 dobj cDNAs,contains
R885 T1457 T1456 amod different,cDNAs
R886 T1458 T1459 advmod largely,derived
R887 T1459 T1456 acl derived,cDNAs
R888 T1460 T1459 prep from,derived
R889 T1461 T1462 det the,retina
R890 T1462 T1460 pobj retina,from
R891 T1463 T1462 cc and,retina
R892 T1464 T1465 amod nervous,system
R893 T1465 T1462 conj system,retina
R894 T1466 T1449 punct ", ",contains
R895 T1467 T1449 cc and,contains
R896 T1468 T1469 det the,microarray
R897 T1469 T1471 nsubj microarray,contains
R898 T1470 T1469 compound Affymetrix,microarray
R899 T1471 T1449 conj contains,contains
R900 T1472 T1473 quantmod over,"34,000"
R901 T1473 T1474 nummod "34,000",genes
R902 T1474 T1471 dobj genes,contains
R903 T1475 T1471 punct .,contains
R904 T1477 T1478 nsubjpass Experiments,carried
R905 T1479 T1477 prep at,Experiments
R906 T1480 T1481 det all,timepoints
R907 T1481 T1479 pobj timepoints,at
R908 T1482 T1478 auxpass were,carried
R909 T1483 T1478 prt out,carried
R910 T1484 T1478 prep in,carried
R911 T1485 T1484 pobj triplicate,in
R912 T1486 T1478 punct ", ",carried
R913 T1487 T1478 cc and,carried
R914 T1488 T1489 amod stringent,criteria
R915 T1489 T1490 nsubjpass criteria,applied
R916 T1490 T1478 conj applied,carried
R917 T1491 T1490 auxpass were,applied
R918 T1492 T1490 prep in,applied
R919 T1493 T1492 pcomp deciding,in
R920 T1494 T1495 mark whether,regulated
R921 T1495 T1493 ccomp regulated,deciding
R922 T1496 T1497 det a,gene
R923 T1497 T1495 nsubjpass gene,regulated
R924 T1498 T1497 amod given,gene
R925 T1499 T1495 auxpass was,regulated
R926 T1500 T1495 advmod up,regulated
R927 T1501 T1500 punct -,up
R928 T1502 T1500 cc or,up
R929 T1503 T1500 conj down,up
R930 T1504 T1495 punct -,regulated
R931 T1505 T1495 prep in,regulated
R932 T1506 T1507 det the,mutant
R933 T1507 T1505 pobj mutant,in
R934 T1508 T1509 punct (,see
R935 T1509 T1490 parataxis see,applied
R936 T1510 T1509 dobj Materials,see
R937 T1511 T1510 cc and,Materials
R938 T1512 T1510 conj Methods,Materials
R939 T1513 T1509 prep for,see
R940 T1514 T1513 pobj details,for
R941 T1515 T1509 punct ),see
R942 T1516 T1490 punct .,applied

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1345 34-40 SO_EXT:sequence_altered_entity denotes mutant
T1346 53-59 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T1347 60-67 UBERON:0000966 denotes retinas
T1348 87-96 SO_EXT:wild_type_entity_or_quality denotes wild-type
T1349 122-127 GO:0007567 denotes natal
T1350 151-155 SO_EXT:cDNA denotes cDNA
T1351 188-192 SO_EXT:cDNA denotes cDNA
T1352 263-268 SO_EXT:cDNA denotes cDNAs
T1353 294-300 UBERON:0000966 denotes retina
T1354 305-319 UBERON:0001016 denotes nervous system
T1355 372-377 SO_EXT:0000704 denotes genes
T1356 505-509 SO_EXT:0000704 denotes gene
T1357 514-517 _FRAGMENT denotes up-
T1358 526-535 GO_EXT:positive_regulation denotes regulated
T1359 521-535 GO_EXT:negative_regulation denotes down-regulated
T1360 543-549 SO_EXT:sequence_altered_entity denotes mutant
R833 T1358 T1357 _lexicallyChainedTo regulated,up-

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1303 60-67 UBERON:0000966 denotes retinas
T1304 122-127 GO:0007567 denotes natal
T1305 294-300 UBERON:0000966 denotes retina
T1306 305-319 UBERON:0001016 denotes nervous system
T1307 372-377 SO:0000704 denotes genes
T1308 505-509 SO:0000704 denotes gene