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PMC:1186732 / 57437-58080 JSONTXT

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Id Subject Object Predicate Lexical cue
T13140 0-3 IN denotes For
T13141 41-49 VBN denotes prepared
T13142 4-12 NN denotes antibody
T13143 13-21 NN denotes staining
T13144 21-23 , denotes ,
T13145 23-35 NNS denotes cryosections
T13146 36-40 VBD denotes were
T13147 50-53 CC denotes and
T13148 54-61 VBN denotes stained
T13149 62-64 IN denotes as
T13150 65-74 VBN denotes described
T13151 75-85 RB denotes previously
T13152 86-87 -LRB- denotes [
T13153 87-89 CD denotes 63
T13154 89-90 -RRB- denotes ]
T13155 90-91 . denotes .
T13156 91-298 sentence denotes Primary antibodies used were a polyclonal anti-blue opsin raised in rabbit (1:300; Chemicon International, Temecula, California, United States; AB5407) and a mouse monoclonal anti-rhodopsin (1:200; rho4D2).
T13157 92-99 JJ denotes Primary
T13158 100-110 NNS denotes antibodies
T13159 116-120 VBD denotes were
T13160 111-115 VBN denotes used
T13161 121-122 DT denotes a
T13162 144-149 NN denotes opsin
T13163 123-133 JJ denotes polyclonal
T13164 134-143 JJ denotes anti-blue
T13165 150-156 VBN denotes raised
T13166 157-159 IN denotes in
T13167 160-166 NN denotes rabbit
T13168 167-168 -LRB- denotes (
T13169 236-242 NN denotes AB5407
T13170 168-169 CD denotes 1
T13171 169-170 SYM denotes :
T13172 170-173 CD denotes 300
T13173 173-174 : denotes ;
T13174 175-183 NNP denotes Chemicon
T13175 184-197 NNP denotes International
T13176 197-199 , denotes ,
T13177 199-207 NNP denotes Temecula
T13178 207-209 , denotes ,
T13179 209-219 NNP denotes California
T13180 219-221 , denotes ,
T13181 221-227 NNP denotes United
T13182 228-234 NNP denotes States
T13183 234-235 : denotes ;
T13184 242-243 -RRB- denotes )
T13185 244-247 CC denotes and
T13186 248-249 DT denotes a
T13187 267-281 NN denotes anti-rhodopsin
T13188 250-255 NN denotes mouse
T13189 256-266 JJ denotes monoclonal
T13190 282-283 -LRB- denotes (
T13191 290-296 NN denotes rho4D2
T13192 283-284 CD denotes 1
T13193 284-285 SYM denotes :
T13194 285-288 CD denotes 200
T13195 288-289 : denotes ;
T13196 296-297 -RRB- denotes )
T13197 297-298 . denotes .
T13198 298-458 sentence denotes Secondary antibodies used were Cy2- or Cy3-conjugated goat anti-rabbit and anti-mouse (1:500; Jackson Immunologicals, West Grove, Pennsylvania, United States).
T13199 299-308 JJ denotes Secondary
T13200 309-319 NNS denotes antibodies
T13201 325-329 VBD denotes were
T13202 320-324 VBN denotes used
T13203 330-333 NN denotes Cy2
T13204 342-352 VBN denotes conjugated
T13205 333-334 HYPH denotes -
T13206 335-337 CC denotes or
T13207 338-341 NN denotes Cy3
T13208 341-342 HYPH denotes -
T13209 358-369 NN denotes anti-rabbit
T13210 353-357 NN denotes goat
T13211 370-373 CC denotes and
T13212 374-384 NN denotes anti-mouse
T13213 385-386 -LRB- denotes (
T13214 401-415 NNPS denotes Immunologicals
T13215 386-387 CD denotes 1
T13216 387-388 SYM denotes :
T13217 388-391 CD denotes 500
T13218 391-392 : denotes ;
T13219 393-400 NNP denotes Jackson
T13220 415-417 , denotes ,
T13221 417-421 NNP denotes West
T13222 422-427 NNP denotes Grove
T13223 427-429 , denotes ,
T13224 429-441 NNP denotes Pennsylvania
T13225 441-443 , denotes ,
T13226 443-449 NNP denotes United
T13227 450-456 NNP denotes States
T13228 456-457 -RRB- denotes )
T13229 457-458 . denotes .
T13230 458-643 sentence denotes Following antibody staining, 4′-DAPI was applied to stain nuclei (Sigma), and the sections were coverslipped and mounted in Gel/Mount (Biomeda, Foster City, California, United States).
T13231 459-468 VBG denotes Following
T13232 500-507 VBN denotes applied
T13233 469-477 NN denotes antibody
T13234 478-486 NN denotes staining
T13235 486-488 , denotes ,
T13236 488-489 CD denotes 4
T13237 491-495 NN denotes DAPI
T13238 489-490 SYM denotes ′
T13239 490-491 HYPH denotes -
T13240 496-499 VBD denotes was
T13241 508-510 TO denotes to
T13242 511-516 VB denotes stain
T13243 517-523 NNS denotes nuclei
T13244 524-525 -LRB- denotes (
T13245 525-530 NNP denotes Sigma
T13246 530-531 -RRB- denotes )
T13247 531-533 , denotes ,
T13248 533-536 CC denotes and
T13249 537-540 DT denotes the
T13250 541-549 NNS denotes sections
T13251 555-567 VBN denotes coverslipped
T13252 550-554 VBD denotes were
T13253 568-571 CC denotes and
T13254 572-579 VBN denotes mounted
T13255 580-582 IN denotes in
T13256 583-586 NN denotes Gel
T13257 587-592 NN denotes Mount
T13258 586-587 HYPH denotes /
T13259 593-594 -LRB- denotes (
T13260 594-601 NNP denotes Biomeda
T13261 601-603 , denotes ,
T13262 603-609 NNP denotes Foster
T13263 610-614 NNP denotes City
T13264 614-616 , denotes ,
T13265 616-626 NNP denotes California
T13266 626-628 , denotes ,
T13267 628-634 NNP denotes United
T13268 635-641 NNP denotes States
T13269 641-642 -RRB- denotes )
T13270 642-643 . denotes .
R8803 T13140 T13141 prep For,prepared
R8804 T13142 T13143 compound antibody,staining
R8805 T13143 T13140 pobj staining,For
R8806 T13144 T13141 punct ", ",prepared
R8807 T13145 T13141 nsubjpass cryosections,prepared
R8808 T13146 T13141 auxpass were,prepared
R8809 T13147 T13141 cc and,prepared
R8810 T13148 T13141 conj stained,prepared
R8811 T13149 T13150 mark as,described
R8812 T13150 T13148 advcl described,stained
R8813 T13151 T13150 advmod previously,described
R8814 T13152 T13153 punct [,63
R8815 T13153 T13148 parataxis 63,stained
R8816 T13154 T13153 punct ],63
R8817 T13155 T13141 punct .,prepared
R8818 T13157 T13158 amod Primary,antibodies
R8819 T13158 T13159 nsubj antibodies,were
R8820 T13160 T13158 acl used,antibodies
R8821 T13161 T13162 det a,opsin
R8822 T13162 T13159 attr opsin,were
R8823 T13163 T13162 amod polyclonal,opsin
R8824 T13164 T13162 amod anti-blue,opsin
R8825 T13165 T13162 acl raised,opsin
R8826 T13166 T13165 prep in,raised
R8827 T13167 T13166 pobj rabbit,in
R8828 T13168 T13169 punct (,AB5407
R8829 T13169 T13167 parataxis AB5407,rabbit
R8830 T13170 T13169 dep 1,AB5407
R8831 T13171 T13172 punct :,300
R8832 T13172 T13170 prep 300,1
R8833 T13173 T13169 punct ;,AB5407
R8834 T13174 T13175 compound Chemicon,International
R8835 T13175 T13169 dep International,AB5407
R8836 T13176 T13175 punct ", ",International
R8837 T13177 T13175 npadvmod Temecula,International
R8838 T13178 T13175 punct ", ",International
R8839 T13179 T13175 npadvmod California,International
R8840 T13180 T13175 punct ", ",International
R8841 T13181 T13182 compound United,States
R8842 T13182 T13175 appos States,International
R8843 T13183 T13169 punct ;,AB5407
R8844 T13184 T13169 punct ),AB5407
R8845 T13185 T13162 cc and,opsin
R8846 T13186 T13187 det a,anti-rhodopsin
R8847 T13187 T13162 conj anti-rhodopsin,opsin
R8848 T13188 T13187 nmod mouse,anti-rhodopsin
R8849 T13189 T13187 amod monoclonal,anti-rhodopsin
R8850 T13190 T13191 punct (,rho4D2
R8851 T13191 T13187 parataxis rho4D2,anti-rhodopsin
R8852 T13192 T13191 dep 1,rho4D2
R8853 T13193 T13194 punct :,200
R8854 T13194 T13192 prep 200,1
R8855 T13195 T13191 punct ;,rho4D2
R8856 T13196 T13191 punct ),rho4D2
R8857 T13197 T13159 punct .,were
R8858 T13199 T13200 amod Secondary,antibodies
R8859 T13200 T13201 nsubj antibodies,were
R8860 T13202 T13200 acl used,antibodies
R8861 T13203 T13204 npadvmod Cy2,conjugated
R8862 T13204 T13209 amod conjugated,anti-rabbit
R8863 T13205 T13203 punct -,Cy2
R8864 T13206 T13203 cc or,Cy2
R8865 T13207 T13203 conj Cy3,Cy2
R8866 T13208 T13204 punct -,conjugated
R8867 T13209 T13201 attr anti-rabbit,were
R8868 T13210 T13209 compound goat,anti-rabbit
R8869 T13211 T13209 cc and,anti-rabbit
R8870 T13212 T13209 conj anti-mouse,anti-rabbit
R8871 T13213 T13214 punct (,Immunologicals
R8872 T13214 T13209 parataxis Immunologicals,anti-rabbit
R8873 T13215 T13214 dep 1,Immunologicals
R8874 T13216 T13217 punct :,500
R8875 T13217 T13215 prep 500,1
R8876 T13218 T13214 punct ;,Immunologicals
R8877 T13219 T13214 compound Jackson,Immunologicals
R8878 T13220 T13214 punct ", ",Immunologicals
R8879 T13221 T13222 compound West,Grove
R8880 T13222 T13214 npadvmod Grove,Immunologicals
R8881 T13223 T13214 punct ", ",Immunologicals
R8882 T13224 T13214 npadvmod Pennsylvania,Immunologicals
R8883 T13225 T13214 punct ", ",Immunologicals
R8884 T13226 T13227 compound United,States
R8885 T13227 T13214 npadvmod States,Immunologicals
R8886 T13228 T13214 punct ),Immunologicals
R8887 T13229 T13201 punct .,were
R8888 T13231 T13232 prep Following,applied
R8889 T13233 T13234 compound antibody,staining
R8890 T13234 T13231 pobj staining,Following
R8891 T13235 T13232 punct ", ",applied
R8892 T13236 T13237 nummod 4,DAPI
R8893 T13237 T13232 nsubjpass DAPI,applied
R8894 T13238 T13236 punct ′,4
R8895 T13239 T13237 punct -,DAPI
R8896 T13240 T13232 auxpass was,applied
R8897 T13241 T13242 aux to,stain
R8898 T13242 T13232 advcl stain,applied
R8899 T13243 T13242 dobj nuclei,stain
R8900 T13244 T13245 punct (,Sigma
R8901 T13245 T13232 parataxis Sigma,applied
R8902 T13246 T13245 punct ),Sigma
R8903 T13247 T13232 punct ", ",applied
R8904 T13248 T13232 cc and,applied
R8905 T13249 T13250 det the,sections
R8906 T13250 T13251 nsubjpass sections,coverslipped
R8907 T13251 T13232 conj coverslipped,applied
R8908 T13252 T13251 auxpass were,coverslipped
R8909 T13253 T13251 cc and,coverslipped
R8910 T13254 T13251 conj mounted,coverslipped
R8911 T13255 T13254 prep in,mounted
R8912 T13256 T13257 compound Gel,Mount
R8913 T13257 T13255 pobj Mount,in
R8914 T13258 T13257 punct /,Mount
R8915 T13259 T13260 punct (,Biomeda
R8916 T13260 T13257 parataxis Biomeda,Mount
R8917 T13261 T13260 punct ", ",Biomeda
R8918 T13262 T13263 compound Foster,City
R8919 T13263 T13260 npadvmod City,Biomeda
R8920 T13264 T13260 punct ", ",Biomeda
R8921 T13265 T13260 npadvmod California,Biomeda
R8922 T13266 T13260 punct ", ",Biomeda
R8923 T13267 T13268 compound United,States
R8924 T13268 T13260 npadvmod States,Biomeda
R8925 T13269 T13260 punct ),Biomeda
R8926 T13270 T13232 punct .,applied

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13121 4-12 GO:0042571 denotes antibody
T13122 100-110 GO:0042571 denotes antibodies
T13123 139-149 PR_EXT:000001195 denotes blue opsin
T13124 160-166 NCBITaxon:9986 denotes rabbit
T13125 250-255 NCBITaxon:10088 denotes mouse
T13126 272-281 PR_EXT:000001245 denotes rhodopsin
T13127 309-319 GO:0042571 denotes antibodies
T13128 330-333 CHEBI:52302 denotes Cy2
T13129 338-341 CHEBI:37987 denotes Cy3
T13130 342-352 MOP:0000779 denotes conjugated
T13131 353-357 NCBITaxon:9925 denotes goat
T13132 363-369 NCBITaxon:9986 denotes rabbit
T13133 379-384 NCBITaxon:10088 denotes mouse
T13134 469-477 GO:0042571 denotes antibody
T13135 488-495 CHEBI:51231 denotes 4′-DAPI
T13136 517-523 GO:0005634 denotes nuclei

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13105 4-12 GO:0042571 denotes antibody
T13106 100-110 GO:0042571 denotes antibodies
T13107 139-149 PR:000001195 denotes blue opsin
T13108 160-166 NCBITaxon:9986 denotes rabbit
T13109 250-255 NCBITaxon:10088 denotes mouse
T13110 272-281 PR:000001245 denotes rhodopsin
T13111 309-319 GO:0042571 denotes antibodies
T13112 330-333 CHEBI:52302 denotes Cy2
T13113 338-341 CHEBI:37987 denotes Cy3
T13114 342-352 MOP:0000779 denotes conjugated
T13115 353-357 NCBITaxon:9925 denotes goat
T13116 363-369 NCBITaxon:9986 denotes rabbit
T13117 379-384 NCBITaxon:10088 denotes mouse
T13118 469-477 GO:0042571 denotes antibody
T13119 488-495 CHEBI:51231 denotes 4′-DAPI
T13120 517-523 GO:0005634 denotes nuclei

2_test

Id Subject Object Predicate Lexical cue
16110338-12403708-85798577 87-89 12403708 denotes 63
T29045 87-89 12403708 denotes 63