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PMC:1186732 / 5468-6024 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1181 0-2 IN denotes In
T1182 64-73 VBD denotes undertook
T1183 3-8 NN denotes order
T1184 9-11 TO denotes to
T1185 19-29 VB denotes understand
T1186 12-18 RBR denotes better
T1187 30-33 DT denotes the
T1188 46-51 NN denotes basis
T1189 34-45 JJ denotes mechanistic
T1190 52-54 IN denotes of
T1191 55-59 NN denotes ESCS
T1192 59-61 , denotes ,
T1193 61-63 PRP denotes we
T1194 74-75 DT denotes a
T1195 106-114 NN denotes analysis
T1196 76-85 JJ denotes molecular
T1197 86-89 CC denotes and
T1198 90-105 JJ denotes ultrastructural
T1199 115-117 IN denotes of
T1200 118-121 DT denotes the
T1201 122-136 NNS denotes photoreceptors
T1202 137-139 IN denotes of
T1203 140-143 DT denotes the
T1204 155-160 NN denotes mouse
T1205 144-147 NN denotes rd7
T1206 148-154 NN denotes mutant
T1207 160-161 . denotes .
T1208 161-362 sentence denotes Microarray and in situ hybridization analyses revealed a modest increase in the number of S-opsin–positive cells and widespread derepression of many cone-specific genes within rod photoreceptor cells.
T1209 162-172 NN denotes Microarray
T1210 199-207 NNS denotes analyses
T1211 173-176 CC denotes and
T1212 177-179 FW denotes in
T1213 180-184 FW denotes situ
T1214 185-198 NN denotes hybridization
T1215 208-216 VBD denotes revealed
T1216 217-218 DT denotes a
T1217 226-234 NN denotes increase
T1218 219-225 JJ denotes modest
T1219 235-237 IN denotes in
T1220 238-241 DT denotes the
T1221 242-248 NN denotes number
T1222 249-251 IN denotes of
T1223 252-253 NN denotes S
T1224 260-268 JJ denotes positive
T1225 253-254 HYPH denotes -
T1226 254-259 JJ denotes opsin
T1227 259-260 HYPH denotes –
T1228 269-274 NNS denotes cells
T1229 275-278 CC denotes and
T1230 279-289 JJ denotes widespread
T1231 290-302 NN denotes derepression
T1232 303-305 IN denotes of
T1233 306-310 JJ denotes many
T1234 325-330 NNS denotes genes
T1235 311-315 NN denotes cone
T1236 316-324 JJ denotes specific
T1237 315-316 HYPH denotes -
T1238 331-337 IN denotes within
T1239 338-341 NN denotes rod
T1240 356-361 NNS denotes cells
T1241 342-355 NN denotes photoreceptor
T1242 361-362 . denotes .
T1243 362-556 sentence denotes Ultrastructural studies demonstrated that the cells that coexpress rod and cone genes in the rd7 retina represent a morphologically hybrid cell type, intermediate between normal rods and cones.
T1244 363-378 JJ denotes Ultrastructural
T1245 379-386 NNS denotes studies
T1246 387-399 VBD denotes demonstrated
T1247 400-404 IN denotes that
T1248 467-476 VBP denotes represent
T1249 405-408 DT denotes the
T1250 409-414 NNS denotes cells
T1251 415-419 WDT denotes that
T1252 420-429 VBP denotes coexpress
T1253 430-433 NN denotes rod
T1254 443-448 NNS denotes genes
T1255 434-437 CC denotes and
T1256 438-442 NN denotes cone
T1257 449-451 IN denotes in
T1258 452-455 DT denotes the
T1259 460-466 NN denotes retina
T1260 456-459 NN denotes rd7
T1261 477-478 DT denotes a
T1262 507-511 NN denotes type
T1263 479-494 RB denotes morphologically
T1264 495-501 JJ denotes hybrid
T1265 502-506 NN denotes cell
T1266 511-513 , denotes ,
T1267 513-525 JJ denotes intermediate
T1268 526-533 IN denotes between
T1269 534-540 JJ denotes normal
T1270 541-545 NNS denotes rods
T1271 546-549 CC denotes and
T1272 550-555 NNS denotes cones
T1273 555-556 . denotes .
R745 T1181 T1182 prep In,undertook
R746 T1183 T1181 pobj order,In
R747 T1184 T1185 aux to,understand
R748 T1185 T1183 acl understand,order
R749 T1186 T1185 advmod better,understand
R750 T1187 T1188 det the,basis
R751 T1188 T1185 dobj basis,understand
R752 T1189 T1188 amod mechanistic,basis
R753 T1190 T1188 prep of,basis
R754 T1191 T1190 pobj ESCS,of
R755 T1192 T1182 punct ", ",undertook
R756 T1193 T1182 nsubj we,undertook
R757 T1194 T1195 det a,analysis
R758 T1195 T1182 dobj analysis,undertook
R759 T1196 T1195 amod molecular,analysis
R760 T1197 T1196 cc and,molecular
R761 T1198 T1196 conj ultrastructural,molecular
R762 T1199 T1195 prep of,analysis
R763 T1200 T1201 det the,photoreceptors
R764 T1201 T1199 pobj photoreceptors,of
R765 T1202 T1201 prep of,photoreceptors
R766 T1203 T1204 det the,mouse
R767 T1204 T1202 pobj mouse,of
R768 T1205 T1204 compound rd7,mouse
R769 T1206 T1204 compound mutant,mouse
R770 T1207 T1182 punct .,undertook
R771 T1209 T1210 nmod Microarray,analyses
R772 T1210 T1215 nsubj analyses,revealed
R773 T1211 T1209 cc and,Microarray
R774 T1212 T1213 advmod in,situ
R775 T1213 T1214 amod situ,hybridization
R776 T1214 T1209 conj hybridization,Microarray
R777 T1216 T1217 det a,increase
R778 T1217 T1215 dobj increase,revealed
R779 T1218 T1217 amod modest,increase
R780 T1219 T1217 prep in,increase
R781 T1220 T1221 det the,number
R782 T1221 T1219 pobj number,in
R783 T1222 T1221 prep of,number
R784 T1223 T1224 npadvmod S,positive
R785 T1224 T1228 amod positive,cells
R786 T1225 T1223 punct -,S
R787 T1226 T1223 amod opsin,S
R788 T1227 T1224 punct –,positive
R789 T1228 T1222 pobj cells,of
R790 T1229 T1228 cc and,cells
R791 T1230 T1231 amod widespread,derepression
R792 T1231 T1228 conj derepression,cells
R793 T1232 T1231 prep of,derepression
R794 T1233 T1234 amod many,genes
R795 T1234 T1232 pobj genes,of
R796 T1235 T1236 npadvmod cone,specific
R797 T1236 T1234 amod specific,genes
R798 T1237 T1236 punct -,specific
R799 T1238 T1215 prep within,revealed
R800 T1239 T1240 compound rod,cells
R801 T1240 T1238 pobj cells,within
R802 T1241 T1240 compound photoreceptor,cells
R803 T1242 T1215 punct .,revealed
R804 T1244 T1245 amod Ultrastructural,studies
R805 T1245 T1246 nsubj studies,demonstrated
R806 T1247 T1248 mark that,represent
R807 T1248 T1246 ccomp represent,demonstrated
R808 T1249 T1250 det the,cells
R809 T1250 T1248 nsubj cells,represent
R810 T1251 T1252 dep that,coexpress
R811 T1252 T1250 relcl coexpress,cells
R812 T1253 T1254 nmod rod,genes
R813 T1254 T1252 dobj genes,coexpress
R814 T1255 T1253 cc and,rod
R815 T1256 T1253 conj cone,rod
R816 T1257 T1252 prep in,coexpress
R817 T1258 T1259 det the,retina
R818 T1259 T1257 pobj retina,in
R819 T1260 T1259 compound rd7,retina
R820 T1261 T1262 det a,type
R821 T1262 T1248 dobj type,represent
R822 T1263 T1264 advmod morphologically,hybrid
R823 T1264 T1262 amod hybrid,type
R824 T1265 T1262 compound cell,type
R825 T1266 T1262 punct ", ",type
R826 T1267 T1262 amod intermediate,type
R827 T1268 T1267 prep between,intermediate
R828 T1269 T1270 amod normal,rods
R829 T1270 T1268 pobj rods,between
R830 T1271 T1270 cc and,rods
R831 T1272 T1270 conj cones,rods
R832 T1273 T1246 punct .,demonstrated

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T685 76-85 CHEBI_EXT:polyatomic_entity_or_group denotes molecular
T686 122-136 CL:0000210 denotes photoreceptors
T687 148-154 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T688 155-160 NCBITaxon:10088 denotes mouse
T689 185-198 GO:0097617 denotes hybridization
T690 252-259 PR_EXT:000001195 denotes S-opsin
T691 269-274 CL_GO_EXT:cell denotes cells
T692 311-315 CL:0000573 denotes cone
T693 325-330 SO_EXT:0000704 denotes genes
T694 338-361 CL:0000604 denotes rod photoreceptor cells
T695 356-361 CL_GO_EXT:cell denotes cells
T696 409-414 CL_GO_EXT:cell denotes cells
T697 422-429 GO:0010467 denotes express
T698 430-433 CL:0000604 denotes rod
T699 438-442 CL:0000573 denotes cone
T700 443-448 SO_EXT:0000704 denotes genes
T701 460-466 UBERON:0000966 denotes retina
T702 502-506 CL_GO_EXT:cell denotes cell
T703 541-545 CL:0000604 denotes rods
T704 550-555 CL:0000573 denotes cones

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T606 122-136 CL:0000210 denotes photoreceptors
T607 155-160 NCBITaxon:10088 denotes mouse
T608 185-198 GO:0097617 denotes hybridization
T609 252-259 PR:000001195 denotes S-opsin
T610 311-315 CL:0000573 denotes cone
T611 325-330 SO:0000704 denotes genes
T612 338-361 CL:0000604 denotes rod photoreceptor cells
T613 422-429 GO:0010467 denotes express
T614 430-433 CL:0000604 denotes rod
T615 438-442 CL:0000573 denotes cone
T616 443-448 SO:0000704 denotes genes
T617 460-466 UBERON:0000966 denotes retina
T618 541-545 CL:0000604 denotes rods
T619 550-555 CL:0000573 denotes cones