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PMC:1186732 / 51862-53514 JSONTXT

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Id Subject Object Predicate Lexical cue
T11839 306-312 VBN denotes pooled
T11840 313-317 IN denotes from
T11841 318-321 CD denotes two
T11842 322-329 NNS denotes animals
T11843 329-330 -RRB- denotes )
T11844 330-331 . denotes .
T11845 331-433 sentence denotes All microarray experiments were performed in triplicate, in each case with separate RNA preparations.
T11846 332-335 DT denotes All
T11847 347-358 NNS denotes experiments
T11848 336-346 NN denotes microarray
T11849 364-373 VBN denotes performed
T11850 359-363 VBD denotes were
T11851 374-376 IN denotes in
T11852 377-387 NN denotes triplicate
T11853 387-389 , denotes ,
T11854 389-391 IN denotes in
T11855 402-406 IN denotes with
T11856 392-396 DT denotes each
T11857 397-401 NN denotes case
T11858 407-415 JJ denotes separate
T11859 420-432 NNS denotes preparations
T11860 416-419 NN denotes RNA
T11861 432-433 . denotes .
T11862 433-524 sentence denotes Microarray experiments with cDNAs were performed with the P0, P6, and P14 derived samples.
T11863 434-444 NN denotes Microarray
T11864 445-456 NNS denotes experiments
T11865 473-482 VBN denotes performed
T11866 457-461 IN denotes with
T11867 462-467 NNS denotes cDNAs
T11868 468-472 VBD denotes were
T11869 483-487 IN denotes with
T11870 488-491 DT denotes the
T11871 516-523 NNS denotes samples
T11872 492-494 NN denotes P0
T11873 508-515 VBN denotes derived
T11874 494-496 , denotes ,
T11875 496-498 NN denotes P6
T11876 498-500 , denotes ,
T11877 500-503 CC denotes and
T11878 504-507 NN denotes P14
T11879 523-524 . denotes .
T11880 524-725 sentence denotes Probes were labeled with either Cy3 or Cy5 using the Array 900 kit from Genisphere (Hatfield, Pennsylvania, United States) starting with 5 μg of total RNA according to the manufacturer's instructions.
T11881 525-531 NNS denotes Probes
T11882 537-544 VBN denotes labeled
T11883 532-536 VBD denotes were
T11884 545-549 IN denotes with
T11885 550-556 CC denotes either
T11886 557-560 NN denotes Cy3
T11887 561-563 CC denotes or
T11888 564-567 NN denotes Cy5
T11889 568-573 VBG denotes using
T11890 574-577 DT denotes the
T11891 588-591 NN denotes kit
T11892 578-583 NN denotes Array
T11893 584-587 CD denotes 900
T11894 592-596 IN denotes from
T11895 597-607 NNP denotes Genisphere
T11896 608-609 -LRB- denotes (
T11897 609-617 NNP denotes Hatfield
T11898 617-619 , denotes ,
T11899 619-631 NNP denotes Pennsylvania
T11900 631-633 , denotes ,
T11901 633-639 NNP denotes United
T11902 640-646 NNP denotes States
T11903 646-647 -RRB- denotes )
T11904 648-656 VBG denotes starting
T11905 657-661 IN denotes with
T11906 662-663 CD denotes 5
T11907 664-666 NN denotes μg
T11908 667-669 IN denotes of
T11909 670-675 JJ denotes total
T11910 676-679 NN denotes RNA
T11911 680-689 VBG denotes according
T11912 690-692 IN denotes to
T11913 693-696 DT denotes the
T11914 697-709 NN denotes manufacturer
T11915 712-724 NNS denotes instructions
T11916 709-711 POS denotes 's
T11917 724-725 . denotes .
T11918 725-798 sentence denotes Wild-type control probes were compared to mutant on the same microarray.
T11919 726-730 JJ denotes Wild
T11920 731-735 NN denotes type
T11921 730-731 HYPH denotes -
T11922 744-750 NNS denotes probes
T11923 736-743 NN denotes control
T11924 756-764 VBN denotes compared
T11925 751-755 VBD denotes were
T11926 765-767 IN denotes to
T11927 768-774 NN denotes mutant
T11928 775-777 IN denotes on
T11929 778-781 DT denotes the
T11930 787-797 NN denotes microarray
T11931 782-786 JJ denotes same
T11932 797-798 . denotes .
T11933 798-946 sentence denotes In two of the three replicates, the mutant probe was labeled with Cy3 and the wild type with Cy5, and in the third replicate the dyes were swapped.
T11934 799-801 IN denotes In
T11935 852-859 VBN denotes labeled
T11936 802-805 CD denotes two
T11937 813-818 CD denotes three
T11938 806-808 IN denotes of
T11939 809-812 DT denotes the
T11940 819-829 NNS denotes replicates
T11941 829-831 , denotes ,
T11942 831-834 DT denotes the
T11943 842-847 NN denotes probe
T11944 835-841 NN denotes mutant
T11945 848-851 VBD denotes was
T11946 860-864 IN denotes with
T11947 865-868 NN denotes Cy3
T11948 869-872 CC denotes and
T11949 873-876 DT denotes the
T11950 882-886 NN denotes type
T11951 877-881 JJ denotes wild
T11952 887-891 IN denotes with
T11953 892-895 NN denotes Cy5
T11954 895-897 , denotes ,
T11955 897-900 CC denotes and
T11956 901-903 IN denotes in
T11957 938-945 VBN denotes swapped
T11958 904-907 DT denotes the
T11959 914-923 NN denotes replicate
T11960 908-913 JJ denotes third
T11961 924-927 DT denotes the
T11962 928-932 NNS denotes dyes
T11963 933-937 VBD denotes were
T11964 945-946 . denotes .
T11965 946-1234 sentence denotes Labeled probe was hybridized to microarray slides spotted with approximately 11,500 cDNA clones from the brain molecular anatomy project library (kind gift of B. Soares, University of Iowa; see http://trans.nih.gov/bmap/index.htm for details) and 500 cDNA clones from our lab collection.
T11966 947-954 VBN denotes Labeled
T11967 955-960 NN denotes probe
T11968 965-975 VBN denotes hybridized
T11969 961-964 VBD denotes was
T11970 976-978 IN denotes to
T11971 979-989 NN denotes microarray
T11972 990-996 NNS denotes slides
T11973 997-1004 VBN denotes spotted
T11974 1005-1009 IN denotes with
T11975 1010-1023 RB denotes approximately
T11976 1024-1030 CD denotes 11,500
T11977 1036-1042 NNS denotes clones
T11978 1031-1035 NN denotes cDNA
T11979 1043-1047 IN denotes from
T11980 1048-1051 DT denotes the
T11981 1084-1091 NN denotes library
T11982 1052-1057 NN denotes brain
T11983 1068-1075 NN denotes anatomy
T11984 1058-1067 JJ denotes molecular
T11985 1076-1083 NN denotes project
T11986 1092-1093 -LRB- denotes (
T11987 1098-1102 NN denotes gift
T11988 1093-1097 NN denotes kind
T11989 1103-1105 IN denotes of
T11990 1106-1108 NNP denotes B.
T11991 1109-1115 NNP denotes Soares
T11992 1115-1117 , denotes ,
T11993 1117-1127 NNP denotes University
T11994 1128-1130 IN denotes of
T11995 1131-1135 NNP denotes Iowa
T11996 1135-1136 : denotes ;
T11997 1137-1140 VB denotes see
T11998 1141-1176 NN denotes http://trans.nih.gov/bmap/index.htm
T11999 1177-1180 IN denotes for
T12000 1181-1188 NNS denotes details
T12001 1188-1189 -RRB- denotes )
T12002 1190-1193 CC denotes and
T12003 1194-1197 CD denotes 500
T12004 1203-1209 NNS denotes clones
T12005 1198-1202 NN denotes cDNA
T12006 1210-1214 IN denotes from
T12007 1215-1218 PRP$ denotes our
T12008 1223-1233 NN denotes collection
T12009 1219-1222 NN denotes lab
T12010 1233-1234 . denotes .
T12011 1234-1291 sentence denotes Slides were printed and hybridized as described [59,60].
T12012 1235-1241 NNS denotes Slides
T12013 1247-1254 VBN denotes printed
T12014 1242-1246 VBD denotes were
T12015 1255-1258 CC denotes and
T12016 1259-1269 VBN denotes hybridized
T12017 1270-1272 IN denotes as
T12018 1273-1282 VBN denotes described
T12019 1283-1284 -LRB- denotes [
T12020 1287-1289 CD denotes 60
T12021 1284-1286 CD denotes 59
T12022 1286-1287 , denotes ,
T12023 1289-1290 -RRB- denotes ]
T12024 1290-1291 . denotes .
T12025 1291-1578 sentence denotes After hybridization and washing of slides according to the manufacturer's instructions (Genisphere), the slides were scanned on an Axon Instruments (Union City, California, United States) GenePix 4000 scanner and images were analyzed using the accompanying GenePix Pro software package.
T12026 1292-1297 IN denotes After
T12027 1409-1416 VBN denotes scanned
T12028 1298-1311 NN denotes hybridization
T12029 1312-1315 CC denotes and
T12030 1316-1323 NN denotes washing
T12031 1324-1326 IN denotes of
T12032 1327-1333 NNS denotes slides
T12033 1334-1343 VBG denotes according
T12034 1344-1346 IN denotes to
T12035 1347-1350 DT denotes the
T12036 1351-1363 NN denotes manufacturer
T12037 1366-1378 NNS denotes instructions
T12038 1363-1365 POS denotes 's
T12039 1379-1380 -LRB- denotes (
T12040 1380-1390 NNP denotes Genisphere
T12041 1390-1391 -RRB- denotes )
T12042 1391-1393 , denotes ,
T12043 1393-1396 DT denotes the
T12044 1397-1403 NNS denotes slides
T12045 1404-1408 VBD denotes were
T12046 1417-1419 IN denotes on
T12047 1420-1422 DT denotes an
T12048 1493-1500 NN denotes scanner
T12049 1423-1427 NNP denotes Axon
T12050 1428-1439 NNPS denotes Instruments
T12051 1440-1441 -LRB- denotes (
T12052 1447-1451 NNP denotes City
T12053 1441-1446 NNP denotes Union
T12054 1451-1453 , denotes ,
T12055 1453-1463 NNP denotes California
T12056 1463-1465 , denotes ,
T12057 1465-1471 NNP denotes United
T12058 1472-1478 NNP denotes States
T12059 1478-1479 -RRB- denotes )
T12060 1480-1487 NNP denotes GenePix
T12061 1488-1492 CD denotes 4000
T12062 1501-1504 CC denotes and
T12063 1505-1511 NNS denotes images
T12064 1517-1525 VBN denotes analyzed
T12065 1512-1516 VBD denotes were
T12066 1526-1531 VBG denotes using
T12067 1532-1535 DT denotes the
T12068 1570-1577 NN denotes package
T12069 1536-1548 VBG denotes accompanying
T12071 1557-1560 NNP denotes Pro
T12072 1561-1569 NN denotes software
T12073 1577-1578 . denotes .
T12074 1578-1652 sentence denotes The complete raw cDNA microarray data set are available in Tables S6–S14.
T12075 1579-1582 DT denotes The
T12076 1617-1620 NN denotes set
T12077 1583-1591 JJ denotes complete
T12078 1592-1595 JJ denotes raw
T12079 1596-1600 NN denotes cDNA
T12080 1601-1611 NN denotes microarray
T12081 1612-1616 NNS denotes data
T12082 1621-1624 VBP denotes are
T12083 1625-1634 JJ denotes available
T12084 1635-1637 IN denotes in
T12085 1638-1644 NNS denotes Tables
T12086 1645-1647 NN denotes S6
T12087 1647-1648 SYM denotes –
T12088 1648-1651 NN denotes S14
T12089 1651-1652 . denotes .
T12765 0-5 JJ denotes Total
T12766 18-25 NNS denotes samples
T12767 6-13 JJ denotes retinal
T12768 14-17 NN denotes RNA
T12769 31-39 VBN denotes isolated
T12770 26-30 VBD denotes were
T12771 40-44 IN denotes from
T12772 45-47 NN denotes P0
T12773 79-83 NNS denotes mice
T12774 47-49 , denotes ,
T12775 49-51 NN denotes P6
T12776 51-53 , denotes ,
T12777 53-56 NN denotes P14
T12778 56-58 , denotes ,
T12779 58-61 CC denotes and
T12780 62-65 NN denotes P21
T12781 66-71 NN denotes Nr2e3
T12782 72-78 NN denotes mutant
T12783 84-89 VBG denotes using
T12784 90-93 DT denotes the
T12785 101-108 NN denotes reagent
T12786 94-100 NN denotes Trizol
T12787 109-110 -LRB- denotes (
T12788 110-115 NNP denotes Gibco
T12789 115-117 , denotes ,
T12790 117-120 NNP denotes San
T12791 121-126 NNP denotes Diego
T12792 126-128 , denotes ,
T12793 128-138 NNP denotes California
T12794 138-139 , denotes .
T12795 140-146 NNP denotes United
T12796 147-153 NNP denotes States
T12797 153-154 -RRB- denotes )
T12798 154-155 . denotes .
T12799 155-244 sentence denotes Total retinal RNA samples from age-matched wild-type C57BL/6 mice were used as controls.
T12800 156-161 JJ denotes Total
T12801 174-181 NNS denotes samples
T12802 162-169 JJ denotes retinal
T12803 170-173 NN denotes RNA
T12804 227-231 VBN denotes used
T12805 182-186 IN denotes from
T12806 187-190 NN denotes age
T12807 191-198 VBN denotes matched
T12808 190-191 HYPH denotes -
T12809 217-221 NNS denotes mice
T12810 199-203 JJ denotes wild
T12811 204-208 NN denotes type
T12812 203-204 HYPH denotes -
T12813 209-214 NN denotes C57BL
T12814 214-215 HYPH denotes /
T12815 215-216 CD denotes 6
T12816 222-226 VBD denotes were
T12817 232-234 IN denotes as
T12818 235-243 NNS denotes controls
T12819 243-244 . denotes .
T11828 244-331 sentence denotes Individual total RNA samples were derived from four retinas (pooled from two animals).
T11829 245-255 JJ denotes Individual
T11830 266-273 NNS denotes samples
T11831 256-261 JJ denotes total
T11832 262-265 NN denotes RNA
T11833 279-286 VBN denotes derived
T11834 274-278 VBD denotes were
T11835 287-291 IN denotes from
T11836 292-296 CD denotes four
T11837 297-304 NNS denotes retinas
T11838 305-306 -LRB- denotes (
T12070 1549-1556 NNP denotes GenePix
R7796 T11829 T11830 amod Individual,samples
R7797 T11830 T11833 nsubjpass samples,derived
R7798 T11831 T11830 amod total,samples
R7799 T11832 T11830 compound RNA,samples
R7800 T11834 T11833 auxpass were,derived
R7801 T11835 T11833 prep from,derived
R7802 T11836 T11837 nummod four,retinas
R7803 T11837 T11835 pobj retinas,from
R7804 T11838 T11837 punct (,retinas
R7805 T11839 T11837 acl pooled,retinas
R7806 T11840 T11839 prep from,pooled
R7807 T11841 T11842 nummod two,animals
R7808 T11842 T11840 pobj animals,from
R7809 T11843 T11833 punct ),derived
R7810 T11844 T11833 punct .,derived
R7811 T11846 T11847 det All,experiments
R7812 T11847 T11849 nsubjpass experiments,performed
R7813 T11848 T11847 compound microarray,experiments
R7814 T11850 T11849 auxpass were,performed
R7815 T11851 T11849 prep in,performed
R7816 T11852 T11851 pobj triplicate,in
R7817 T11853 T11849 punct ", ",performed
R7818 T11854 T11855 prep in,with
R7819 T11855 T11849 prep with,performed
R7820 T11856 T11857 det each,case
R7821 T11857 T11854 pobj case,in
R7822 T11858 T11859 amod separate,preparations
R7823 T11859 T11855 pobj preparations,with
R7824 T11860 T11859 compound RNA,preparations
R7825 T11861 T11849 punct .,performed
R7826 T11863 T11864 compound Microarray,experiments
R7827 T11864 T11865 nsubjpass experiments,performed
R7828 T11866 T11864 prep with,experiments
R7829 T11867 T11866 pobj cDNAs,with
R7830 T11868 T11865 auxpass were,performed
R7831 T11869 T11865 prep with,performed
R7832 T11870 T11871 det the,samples
R7833 T11871 T11869 pobj samples,with
R7834 T11872 T11873 npadvmod P0,derived
R7835 T11873 T11871 amod derived,samples
R7836 T11874 T11872 punct ", ",P0
R7837 T11875 T11872 conj P6,P0
R7838 T11876 T11875 punct ", ",P6
R7839 T11877 T11875 cc and,P6
R7840 T11878 T11875 conj P14,P6
R7841 T11879 T11865 punct .,performed
R7842 T11881 T11882 nsubjpass Probes,labeled
R7843 T11883 T11882 auxpass were,labeled
R7844 T11884 T11882 prep with,labeled
R7845 T11885 T11886 preconj either,Cy3
R7846 T11886 T11884 pobj Cy3,with
R7847 T11887 T11886 cc or,Cy3
R7848 T11888 T11886 conj Cy5,Cy3
R7849 T11889 T11882 advcl using,labeled
R7850 T11890 T11891 det the,kit
R7851 T11891 T11889 dobj kit,using
R7852 T11892 T11891 nmod Array,kit
R7853 T11893 T11892 nummod 900,Array
R7854 T11894 T11891 prep from,kit
R7855 T11895 T11894 pobj Genisphere,from
R7856 T11896 T11897 punct (,Hatfield
R7857 T11897 T11895 parataxis Hatfield,Genisphere
R7858 T11898 T11897 punct ", ",Hatfield
R7859 T11899 T11897 npadvmod Pennsylvania,Hatfield
R7860 T11900 T11897 punct ", ",Hatfield
R7861 T11901 T11902 compound United,States
R7862 T11902 T11897 npadvmod States,Hatfield
R7863 T11903 T11897 punct ),Hatfield
R7864 T11904 T11882 advcl starting,labeled
R7865 T11905 T11904 prep with,starting
R7866 T11906 T11907 nummod 5,μg
R7867 T11907 T11905 pobj μg,with
R7868 T11908 T11907 prep of,μg
R7869 T11909 T11910 amod total,RNA
R7870 T11910 T11908 pobj RNA,of
R7871 T11911 T11904 prep according,starting
R7872 T11912 T11911 prep to,according
R7873 T11913 T11914 det the,manufacturer
R7874 T11914 T11915 poss manufacturer,instructions
R7875 T11915 T11912 pobj instructions,to
R7876 T11916 T11914 case 's,manufacturer
R7877 T11917 T11882 punct .,labeled
R7878 T11919 T11920 amod Wild,type
R7879 T11920 T11922 compound type,probes
R7880 T11921 T11920 punct -,type
R7881 T11922 T11924 nsubjpass probes,compared
R7882 T11923 T11922 compound control,probes
R7883 T11925 T11924 auxpass were,compared
R7884 T11926 T11924 prep to,compared
R7885 T11927 T11926 pobj mutant,to
R7886 T11928 T11924 prep on,compared
R7887 T11929 T11930 det the,microarray
R7888 T11930 T11928 pobj microarray,on
R7889 T11931 T11930 amod same,microarray
R7890 T11932 T11924 punct .,compared
R7891 T11934 T11935 prep In,labeled
R7892 T11936 T11937 quantmod two,three
R7893 T11937 T11940 nummod three,replicates
R7894 T11938 T11937 quantmod of,three
R7895 T11939 T11937 quantmod the,three
R7896 T11940 T11934 pobj replicates,In
R7897 T11941 T11935 punct ", ",labeled
R7898 T11942 T11943 det the,probe
R7899 T11943 T11935 nsubjpass probe,labeled
R7900 T11944 T11943 compound mutant,probe
R7901 T11945 T11935 auxpass was,labeled
R7902 T11946 T11935 prep with,labeled
R7903 T11947 T11946 pobj Cy3,with
R7904 T11948 T11935 cc and,labeled
R7905 T11949 T11950 det the,type
R7906 T11950 T11935 conj type,labeled
R7907 T11951 T11950 amod wild,type
R7908 T11952 T11950 prep with,type
R7909 T11953 T11952 pobj Cy5,with
R7910 T11954 T11935 punct ", ",labeled
R7911 T11955 T11935 cc and,labeled
R7912 T11956 T11957 prep in,swapped
R7913 T11957 T11935 conj swapped,labeled
R7914 T11958 T11959 det the,replicate
R7915 T11959 T11956 pobj replicate,in
R7916 T11960 T11959 amod third,replicate
R7917 T11961 T11962 det the,dyes
R7918 T11962 T11957 nsubjpass dyes,swapped
R7919 T11963 T11957 auxpass were,swapped
R7920 T11964 T11957 punct .,swapped
R7921 T11966 T11967 amod Labeled,probe
R7922 T11967 T11968 nsubjpass probe,hybridized
R7923 T11969 T11968 auxpass was,hybridized
R7924 T11970 T11968 prep to,hybridized
R7925 T11971 T11972 compound microarray,slides
R7926 T11972 T11970 pobj slides,to
R7927 T11973 T11972 acl spotted,slides
R7928 T11974 T11973 prep with,spotted
R7929 T11975 T11976 advmod approximately,"11,500"
R7930 T11976 T11977 nummod "11,500",clones
R7931 T11977 T11974 pobj clones,with
R7932 T11978 T11977 compound cDNA,clones
R7933 T11979 T11977 prep from,clones
R7934 T11980 T11981 det the,library
R7935 T11981 T11979 pobj library,from
R7936 T11982 T11983 nmod brain,anatomy
R7937 T11983 T11981 compound anatomy,library
R7938 T11984 T11983 amod molecular,anatomy
R7939 T11985 T11981 compound project,library
R7940 T11986 T11987 punct (,gift
R7941 T11987 T11977 parataxis gift,clones
R7942 T11988 T11987 compound kind,gift
R7943 T11989 T11987 prep of,gift
R7944 T11990 T11991 compound B.,Soares
R7945 T11991 T11989 pobj Soares,of
R7946 T11992 T11991 punct ", ",Soares
R7947 T11993 T11991 npadvmod University,Soares
R7948 T11994 T11993 prep of,University
R7949 T11995 T11994 pobj Iowa,of
R7950 T11996 T11987 punct ;,gift
R7951 T11997 T11987 advcl see,gift
R7952 T11998 T11997 dobj http://trans.nih.gov/bmap/index.htm,see
R7953 T11999 T11997 prep for,see
R7954 T12000 T11999 pobj details,for
R7955 T12001 T11987 punct ),gift
R7956 T12002 T11977 cc and,clones
R7957 T12003 T12004 nummod 500,clones
R7958 T12004 T11977 conj clones,clones
R7959 T12005 T12004 compound cDNA,clones
R7960 T12006 T12004 prep from,clones
R7961 T12007 T12008 poss our,collection
R7962 T12008 T12006 pobj collection,from
R7963 T12009 T12008 compound lab,collection
R7964 T12010 T11968 punct .,hybridized
R7965 T12012 T12013 nsubjpass Slides,printed
R7966 T12014 T12013 auxpass were,printed
R7967 T12015 T12013 cc and,printed
R7968 T12016 T12013 conj hybridized,printed
R7969 T12017 T12018 mark as,described
R7970 T12018 T12016 advcl described,hybridized
R7971 T12019 T12020 punct [,60
R7972 T12020 T12016 parataxis 60,hybridized
R7973 T12021 T12020 nummod 59,60
R7974 T12022 T12020 punct ",",60
R7975 T12023 T12020 punct ],60
R7976 T12024 T12013 punct .,printed
R7977 T12026 T12027 prep After,scanned
R7978 T12028 T12026 pobj hybridization,After
R7979 T12029 T12028 cc and,hybridization
R7980 T12030 T12028 conj washing,hybridization
R7981 T12031 T12028 prep of,hybridization
R7982 T12032 T12031 pobj slides,of
R7983 T12033 T12028 prep according,hybridization
R7984 T12034 T12033 prep to,according
R7985 T12035 T12036 det the,manufacturer
R7986 T12036 T12037 poss manufacturer,instructions
R7987 T12037 T12034 pobj instructions,to
R7988 T12038 T12036 case 's,manufacturer
R7989 T12039 T12040 punct (,Genisphere
R7990 T12040 T12037 parataxis Genisphere,instructions
R7991 T12041 T12040 punct ),Genisphere
R7992 T12042 T12027 punct ", ",scanned
R7993 T12043 T12044 det the,slides
R7994 T12044 T12027 nsubjpass slides,scanned
R7995 T12045 T12027 auxpass were,scanned
R7996 T12046 T12027 prep on,scanned
R7997 T12047 T12048 det an,scanner
R7998 T12048 T12046 pobj scanner,on
R7999 T12049 T12050 nmod Axon,Instruments
R8000 T12050 T12048 nmod Instruments,scanner
R8001 T12051 T12052 punct (,City
R8002 T12052 T12050 parataxis City,Instruments
R8003 T12053 T12052 compound Union,City
R8004 T12054 T12052 punct ", ",City
R8005 T12055 T12052 npadvmod California,City
R8006 T12056 T12052 punct ", ",City
R8007 T12057 T12058 compound United,States
R8008 T12058 T12052 npadvmod States,City
R8009 T12059 T12052 punct ),City
R8010 T12060 T12048 nmod GenePix,scanner
R8011 T12061 T12060 nummod 4000,GenePix
R8012 T12062 T12027 cc and,scanned
R8013 T12063 T12064 nsubjpass images,analyzed
R8014 T12064 T12027 conj analyzed,scanned
R8015 T12065 T12064 auxpass were,analyzed
R8016 T12066 T12064 advcl using,analyzed
R8017 T12067 T12068 det the,package
R8018 T12068 T12066 dobj package,using
R8019 T12069 T12068 amod accompanying,package
R8020 T12070 T12071 compound GenePix,Pro
R8021 T12071 T12068 compound Pro,package
R8022 T12072 T12068 compound software,package
R8023 T12073 T12027 punct .,scanned
R8024 T12075 T12076 det The,set
R8025 T12076 T12082 nsubj set,are
R8026 T12077 T12076 amod complete,set
R8027 T12078 T12076 amod raw,set
R8028 T12079 T12080 compound cDNA,microarray
R8029 T12080 T12076 compound microarray,set
R8030 T12081 T12076 compound data,set
R8031 T12083 T12082 acomp available,are
R8032 T12084 T12082 prep in,are
R8033 T12085 T12086 compound Tables,S6
R8034 T12086 T12084 pobj S6,in
R8035 T12087 T12088 punct –,S14
R8036 T12088 T12086 prep S14,S6
R8037 T12089 T12082 punct .,are
R8557 T12765 T12766 amod Total,samples
R8558 T12766 T12769 nsubjpass samples,isolated
R8559 T12767 T12766 amod retinal,samples
R8560 T12768 T12766 compound RNA,samples
R8561 T12770 T12769 auxpass were,isolated
R8562 T12771 T12769 prep from,isolated
R8563 T12772 T12773 nmod P0,mice
R8564 T12773 T12771 pobj mice,from
R8565 T12774 T12772 punct ", ",P0
R8566 T12775 T12772 conj P6,P0
R8567 T12776 T12775 punct ", ",P6
R8568 T12777 T12775 conj P14,P6
R8569 T12778 T12777 punct ", ",P14
R8570 T12779 T12777 cc and,P14
R8571 T12780 T12777 conj P21,P14
R8572 T12781 T12782 compound Nr2e3,mutant
R8573 T12782 T12773 compound mutant,mice
R8574 T12783 T12769 advcl using,isolated
R8575 T12784 T12785 det the,reagent
R8576 T12785 T12783 dobj reagent,using
R8577 T12786 T12785 compound Trizol,reagent
R8578 T12787 T12788 punct (,Gibco
R8579 T12788 T12785 parataxis Gibco,reagent
R8580 T12789 T12788 punct ", ",Gibco
R8581 T12790 T12791 compound San,Diego
R8582 T12791 T12788 npadvmod Diego,Gibco
R8583 T12792 T12788 punct ", ",Gibco
R8584 T12793 T12788 npadvmod California,Gibco
R8585 T12794 T12788 punct .,Gibco
R8586 T12795 T12796 compound United,States
R8587 T12796 T12788 npadvmod States,Gibco
R8588 T12797 T12788 punct ),Gibco
R8589 T12798 T12769 punct .,isolated
R8590 T12800 T12801 amod Total,samples
R8591 T12801 T12804 nsubjpass samples,used
R8592 T12802 T12801 amod retinal,samples
R8593 T12803 T12801 compound RNA,samples
R8594 T12805 T12801 prep from,samples
R8595 T12806 T12807 npadvmod age,matched
R8596 T12807 T12809 amod matched,mice
R8597 T12808 T12807 punct -,matched
R8598 T12809 T12805 pobj mice,from
R8599 T12810 T12811 amod wild,type
R8600 T12811 T12809 nmod type,mice
R8601 T12812 T12811 punct -,type
R8602 T12813 T12809 nmod C57BL,mice
R8603 T12814 T12813 punct /,C57BL
R8604 T12815 T12813 nummod 6,C57BL
R8605 T12816 T12804 auxpass were,used
R8606 T12817 T12804 prep as,used
R8607 T12818 T12817 pobj controls,as
R8608 T12819 T12804 punct .,used

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12678 6-13 UBERON:0000966 denotes retinal
T12679 14-17 CHEBI_SO_EXT:RNA denotes RNA
T12680 66-71 PR_EXT:000011403 denotes Nr2e3
T12681 72-78 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T12682 79-83 NCBITaxon:10088 denotes mice
T12683 101-108 CHEBI_EXT:33893 denotes reagent
T12684 162-169 UBERON:0000966 denotes retinal
T12685 170-173 CHEBI_SO_EXT:RNA denotes RNA
T12686 199-208 SO_EXT:wild_type_entity_or_quality denotes wild-type
T12687 217-221 NCBITaxon:10088 denotes mice
T12688 262-265 CHEBI_SO_EXT:RNA denotes RNA
T12689 297-304 UBERON:0000966 denotes retinas
T12690 322-329 NCBITaxon:33208 denotes animals
T12691 416-419 CHEBI_SO_EXT:RNA denotes RNA
T12692 462-467 SO_EXT:cDNA denotes cDNAs
T12693 525-531 CHEBI_SO_EXT:molecular_probe denotes Probes
T12694 537-544 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T12695 557-560 CHEBI:37987 denotes Cy3
T12696 564-567 CHEBI:37989 denotes Cy5
T12697 676-679 CHEBI_SO_EXT:RNA denotes RNA
T12698 726-735 SO_EXT:wild_type_entity_or_quality denotes Wild-type
T12699 744-750 CHEBI_SO_EXT:molecular_probe denotes probes
T12700 768-774 SO_EXT:sequence_altered_entity denotes mutant
T12701 835-841 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T12702 842-847 CHEBI_SO_EXT:molecular_probe denotes probe
T12703 852-859 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T12704 865-868 CHEBI:37987 denotes Cy3
T12705 877-886 SO_EXT:wild_type_entity_or_quality denotes wild type
T12706 892-895 CHEBI:37989 denotes Cy5
T12707 928-932 CHEBI_EXT:37958 denotes dyes
T12708 947-954 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes Labeled
T12709 955-960 CHEBI_SO_EXT:molecular_probe denotes probe
T12710 965-975 GO:0097617 denotes hybridized
T12711 1031-1042 SO_EXT:0000317 denotes cDNA clones
T12712 1058-1067 CHEBI_EXT:polyatomic_entity_or_group denotes molecular
T12713 1068-1075 UBERON:0001062 denotes anatomy
T12714 1198-1209 SO_EXT:0000317 denotes cDNA clones
T12715 1259-1269 GO:0097617 denotes hybridized
T12716 1298-1311 GO:0097617 denotes hybridization
T12717 1596-1600 SO_EXT:cDNA denotes cDNA

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12641 6-13 UBERON:0000966 denotes retinal
T12642 66-71 PR:000011403 denotes Nr2e3
T12643 79-83 NCBITaxon:10088 denotes mice
T12644 101-108 CHEBI:33893 denotes reagent
T12645 162-169 UBERON:0000966 denotes retinal
T12646 217-221 NCBITaxon:10088 denotes mice
T12647 297-304 UBERON:0000966 denotes retinas
T12648 322-329 NCBITaxon:33208 denotes animals
T12649 557-560 CHEBI:37987 denotes Cy3
T12650 564-567 CHEBI:37989 denotes Cy5
T12651 865-868 CHEBI:37987 denotes Cy3
T12652 892-895 CHEBI:37989 denotes Cy5
T12653 928-932 CHEBI:37958 denotes dyes
T12654 965-975 GO:0097617 denotes hybridized
T12655 1031-1042 SO:0000317 denotes cDNA clones
T12656 1068-1075 UBERON:0001062 denotes anatomy
T12657 1198-1209 SO:0000317 denotes cDNA clones
T12658 1259-1269 GO:0097617 denotes hybridized
T12659 1298-1311 GO:0097617 denotes hybridization

2_test

Id Subject Object Predicate Lexical cue
16110338-12692551-85798572 1284-1286 12692551 denotes 59
16110338-14734810-85798573 1287-1289 14734810 denotes 60
T69510 1284-1286 12692551 denotes 59
T42515 1287-1289 14734810 denotes 60