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PMC:1186732 / 50804-51620 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T11596 0-3 CD denotes One
T11597 12-17 NN denotes point
T11598 4-11 JJ denotes further
T11599 33-35 VBZ denotes is
T11600 18-24 JJ denotes worthy
T11601 25-27 IN denotes of
T11602 28-32 NN denotes note
T11603 36-39 DT denotes the
T11604 49-59 NN denotes similarity
T11605 40-48 JJ denotes striking
T11606 60-67 IN denotes between
T11607 68-71 DT denotes the
T11608 79-92 NN denotes photoreceptor
T11609 72-78 NN denotes hybrid
T11610 93-103 VBN denotes identified
T11611 104-106 IN denotes in
T11612 107-111 DT denotes this
T11613 112-117 NN denotes study
T11614 118-121 CC denotes and
T11615 122-123 DT denotes a
T11616 144-157 NN denotes photoreceptor
T11617 124-133 RB denotes naturally
T11618 134-143 VBG denotes occurring
T11619 158-163 VBN denotes found
T11620 164-166 IN denotes in
T11621 167-173 NN denotes ground
T11622 174-183 NNS denotes squirrels
T11623 183-184 . denotes .
T11624 184-308 sentence denotes The “rods” of this species have electrophysiologic, molecular, and ultrastructural features of both rods and cones [52–58].
T11625 185-188 DT denotes The
T11626 190-194 NNS denotes rods
T11627 189-190 `` denotes “
T11628 212-216 VBP denotes have
T11629 194-195 '' denotes ”
T11630 196-198 IN denotes of
T11631 199-203 DT denotes this
T11632 204-211 NNS denotes species
T11633 217-235 JJ denotes electrophysiologic
T11634 268-276 NNS denotes features
T11635 235-237 , denotes ,
T11636 237-246 JJ denotes molecular
T11637 246-248 , denotes ,
T11638 248-251 CC denotes and
T11639 252-267 JJ denotes ultrastructural
T11640 277-279 IN denotes of
T11641 280-284 CC denotes both
T11642 285-289 NNS denotes rods
T11643 290-293 CC denotes and
T11644 294-299 NNS denotes cones
T11645 300-301 -LRB- denotes [
T11646 301-303 CD denotes 52
T11647 303-304 SYM denotes –
T11648 304-306 CD denotes 58
T11649 306-307 -RRB- denotes ]
T11650 307-308 . denotes .
T11651 308-640 sentence denotes Although these unusual findings have been difficult to interpret under the usual assumptions of “duplicity theory” [56], we would like to suggest that ground squirrels may have experienced a naturally occurring down-regulation or loss of Nr2e3 expression in their “rods” that transformed them into a hybrid photoreceptor cell type.
T11652 309-317 IN denotes Although
T11653 346-350 VBN denotes been
T11654 318-323 DT denotes these
T11655 332-340 NNS denotes findings
T11656 324-331 JJ denotes unusual
T11657 341-345 VBP denotes have
T11658 439-443 VB denotes like
T11659 351-360 JJ denotes difficult
T11660 361-363 TO denotes to
T11661 364-373 VB denotes interpret
T11662 374-379 IN denotes under
T11663 380-383 DT denotes the
T11664 390-401 NNS denotes assumptions
T11665 384-389 JJ denotes usual
T11666 402-404 IN denotes of
T11667 405-406 `` denotes “
T11668 406-415 NN denotes duplicity
T11669 416-422 NN denotes theory
T11670 422-423 '' denotes ”
T11671 424-425 -LRB- denotes [
T11672 425-427 CD denotes 56
T11673 427-428 -RRB- denotes ]
T11674 428-430 , denotes ,
T11675 430-432 PRP denotes we
T11676 433-438 MD denotes would
T11677 444-446 TO denotes to
T11678 447-454 VB denotes suggest
T11679 455-459 IN denotes that
T11680 486-497 VBN denotes experienced
T11681 460-466 NN denotes ground
T11682 467-476 NNS denotes squirrels
T11683 477-480 MD denotes may
T11684 481-485 VB denotes have
T11685 498-499 DT denotes a
T11686 525-535 NN denotes regulation
T11687 500-509 RB denotes naturally
T11688 510-519 VBG denotes occurring
T11689 520-524 JJ denotes down
T11690 524-525 HYPH denotes -
T11691 536-538 CC denotes or
T11692 539-543 NN denotes loss
T11693 544-546 IN denotes of
T11694 547-552 NN denotes Nr2e3
T11695 553-563 NN denotes expression
T11696 564-566 IN denotes in
T11697 567-572 PRP$ denotes their
T11698 574-578 NNS denotes rods
T11699 573-574 `` denotes “
T11700 578-579 '' denotes ”
T11701 580-584 WDT denotes that
T11702 585-596 VBD denotes transformed
T11703 597-601 PRP denotes them
T11704 602-606 IN denotes into
T11705 607-608 DT denotes a
T11706 635-639 NN denotes type
T11707 609-615 NN denotes hybrid
T11708 616-629 NN denotes photoreceptor
T11709 630-634 NN denotes cell
T11710 639-640 . denotes .
T11711 640-816 sentence denotes The adaptive significance of such a change, if any, is unknown, and it may simply be due to relaxation of selective pressure for night vision in this strictly diurnal species.
T11712 641-644 DT denotes The
T11713 654-666 NN denotes significance
T11714 645-653 JJ denotes adaptive
T11715 693-695 VBZ denotes is
T11716 667-669 IN denotes of
T11717 670-674 PDT denotes such
T11718 677-683 NN denotes change
T11719 675-676 DT denotes a
T11720 683-685 , denotes ,
T11721 688-691 DT denotes any
T11722 685-687 IN denotes if
T11723 691-693 , denotes ,
T11724 696-703 JJ denotes unknown
T11725 703-705 , denotes ,
T11726 705-708 CC denotes and
T11727 709-711 PRP denotes it
T11728 723-725 VB denotes be
T11729 712-715 MD denotes may
T11730 716-722 RB denotes simply
T11731 726-729 IN denotes due
T11732 730-732 IN denotes to
T11733 733-743 NN denotes relaxation
T11734 744-746 IN denotes of
T11735 747-756 JJ denotes selective
T11736 757-765 NN denotes pressure
T11737 766-769 IN denotes for
T11738 770-775 NN denotes night
T11739 776-782 NN denotes vision
T11740 783-785 IN denotes in
T11741 786-790 DT denotes this
T11742 808-815 NNS denotes species
T11743 791-799 RB denotes strictly
T11744 800-807 JJ denotes diurnal
T11745 815-816 . denotes .
R7555 T11596 T11597 nummod One,point
R7556 T11597 T11599 nsubj point,is
R7557 T11598 T11597 amod further,point
R7559 T11600 T11597 amod worthy,point
R7560 T11601 T11600 prep of,worthy
R7562 T11602 T11601 pobj note,of
R7563 T11603 T11604 det the,similarity
R7564 T11604 T11599 attr similarity,is
R7566 T11605 T11604 amod striking,similarity
R7567 T11606 T11604 prep between,similarity
R7568 T11607 T11608 det the,photoreceptor
R7570 T11608 T11606 pobj photoreceptor,between
R7571 T11609 T11608 compound hybrid,photoreceptor
R7574 T11610 T11608 acl identified,photoreceptor
R7576 T11611 T11610 prep in,identified
R7577 T11612 T11613 det this,study
R7578 T11613 T11611 pobj study,in
R7580 T11614 T11608 cc and,photoreceptor
R7581 T11615 T11616 det a,photoreceptor
R7582 T11616 T11608 conj photoreceptor,photoreceptor
R7583 T11617 T11618 advmod naturally,occurring
R7584 T11618 T11616 amod occurring,photoreceptor
R7586 T11619 T11616 acl found,photoreceptor
R7587 T11620 T11619 prep in,found
R7588 T11621 T11622 compound ground,squirrels
R7590 T11622 T11620 pobj squirrels,in
R7591 T11623 T11599 punct .,is
R7592 T11625 T11626 det The,rods
R7596 T11626 T11628 nsubj rods,have
R7597 T11627 T11626 punct “,rods
R7599 T11629 T11626 punct ”,rods
R7601 T11630 T11626 prep of,rods
R7602 T11631 T11632 det this,species
R7604 T11632 T11630 pobj species,of
R7605 T11633 T11634 amod electrophysiologic,features
R7606 T11634 T11628 dobj features,have
R7608 T11635 T11633 punct ", ",electrophysiologic
R7609 T11636 T11633 conj molecular,electrophysiologic
R7610 T11637 T11636 punct ", ",molecular
R7612 T11638 T11636 cc and,molecular
R7613 T11639 T11636 conj ultrastructural,molecular
R7614 T11640 T11634 prep of,features
R7616 T11641 T11642 preconj both,rods
R7617 T11642 T11640 pobj rods,of
R7618 T11643 T11642 cc and,rods
R7620 T11644 T11642 conj cones,rods
R7621 T11645 T11646 punct [,52
R7623 T11646 T11628 parataxis 52,have
R7624 T11647 T11648 punct –,58
R7625 T11648 T11646 prep 58,52
R7627 T11649 T11646 punct ],52
R7629 T11650 T11628 punct .,have
R7631 T11652 T11653 mark Although,been
R7633 T11653 T11658 advcl been,like
R7634 T11654 T11655 det these,findings
R7635 T11655 T11653 nsubj findings,been
R7636 T11656 T11655 amod unusual,findings
R7637 T11657 T11653 aux have,been
R7639 T11659 T11653 acomp difficult,been
R7640 T11660 T11661 aux to,interpret
R7642 T11661 T11659 advcl interpret,difficult
R7643 T11662 T11661 prep under,interpret
R7644 T11663 T11664 det the,assumptions
R7646 T11664 T11662 pobj assumptions,under
R7647 T11665 T11664 amod usual,assumptions
R7648 T11666 T11664 prep of,assumptions
R7650 T11667 T11666 punct “,of
R7651 T11668 T11669 compound duplicity,theory
R7653 T11669 T11666 pobj theory,of
R7654 T11670 T11653 punct ”,been
R7655 T11671 T11672 punct [,56
R7657 T11672 T11653 parataxis 56,been
R7658 T11673 T11672 punct ],56
R7660 T11674 T11658 punct ", ",like
R7661 T11675 T11658 nsubj we,like
R7662 T11676 T11658 aux would,like
R7664 T11677 T11678 aux to,suggest
R7665 T11678 T11658 xcomp suggest,like
R7666 T11679 T11680 mark that,experienced
R7668 T11680 T11678 ccomp experienced,suggest
R7669 T11681 T11682 compound ground,squirrels
R7671 T11682 T11680 nsubj squirrels,experienced
R7672 T11683 T11680 aux may,experienced
R7673 T11684 T11680 aux have,experienced
R7675 T11685 T11686 det a,regulation
R7676 T11686 T11680 dobj regulation,experienced
R7677 T11687 T11688 advmod naturally,occurring
R7679 T11688 T11686 amod occurring,regulation
R7680 T11689 T11686 amod down,regulation
R7681 T11690 T11686 punct -,regulation
R7683 T11691 T11686 cc or,regulation
R7684 T11692 T11686 conj loss,regulation
R7686 T11693 T11692 prep of,loss
R7687 T11694 T11695 compound Nr2e3,expression
R7688 T11695 T11693 pobj expression,of
R7689 T11696 T11680 prep in,experienced
R7690 T11697 T11698 poss their,rods
R7691 T11698 T11696 pobj rods,in
R7693 T11699 T11698 punct “,rods
R7694 T11700 T11680 punct ”,experienced
R7695 T11701 T11702 dep that,transformed
R7697 T11702 T11680 ccomp transformed,experienced
R7698 T11703 T11702 dobj them,transformed
R7699 T11704 T11702 prep into,transformed
R7701 T11705 T11706 det a,type
R7702 T11706 T11704 pobj type,into
R7704 T11707 T11706 compound hybrid,type
R7705 T11708 T11706 compound photoreceptor,type
R7706 T11709 T11706 compound cell,type
R7707 T11710 T11658 punct .,like
R7709 T11712 T11713 det The,significance
R7710 T11713 T11715 nsubj significance,is
R7712 T11714 T11713 amod adaptive,significance
R7715 T11716 T11713 prep of,significance
R7716 T11717 T11718 predet such,change
R7718 T11718 T11716 pobj change,of
R7719 T11719 T11718 det a,change
R7720 T11720 T11721 punct ", ",any
R7722 T11721 T11713 parataxis any,significance
R7723 T11722 T11721 mark if,any
R7724 T11723 T11721 punct ", ",any
R7726 T11724 T11715 acomp unknown,is
R7727 T11725 T11715 punct ", ",is
R7728 T11726 T11715 cc and,is
R7730 T11727 T11728 nsubj it,be
R7731 T11728 T11715 conj be,is
R7732 T11729 T11728 aux may,be
R7734 T11730 T11728 advmod simply,be
R7735 T11731 T11728 prep due,be
R7737 T11732 T11731 pcomp to,due
R7738 T11733 T11731 pobj relaxation,due
R7739 T11734 T11733 prep of,relaxation
R7741 T11735 T11736 amod selective,pressure
R7742 T11736 T11734 pobj pressure,of
R7744 T11737 T11736 prep for,pressure
R7745 T11738 T11739 compound night,vision
R7746 T11739 T11737 pobj vision,for
R7748 T11740 T11728 prep in,be
R7749 T11741 T11742 det this,species
R7751 T11742 T11740 pobj species,in
R7752 T11743 T11744 advmod strictly,diurnal
R7753 T11744 T11742 amod diurnal,species
R7755 T11745 T11728 punct .,be

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8379 79-92 CL:0000210 denotes photoreceptor
T8380 144-157 CL:0000210 denotes photoreceptor
T8381 167-183 NCBITaxon_EXT:ground_squirrel denotes ground squirrels
T8382 190-194 CL:0000604 denotes rods
T8383 204-211 NCBITaxon:species denotes species
T8384 237-246 CHEBI_EXT:polyatomic_entity_or_group denotes molecular
T8385 285-289 CL:0000604 denotes rods
T8386 294-299 CL:0000573 denotes cones
T8387 460-476 NCBITaxon_EXT:ground_squirrel denotes ground squirrels
T8388 520-535 _FRAGMENT denotes down-regulation
T8389 544-546 _FRAGMENT denotes of
T8390 553-563 GO:0010629 denotes expression
T8391 547-552 PR_EXT:000011403 denotes Nr2e3
T8392 574-578 CL:0000604 denotes rods
T8393 616-634 CL:0000210 denotes photoreceptor cell
T8394 630-634 CL_GO_EXT:cell denotes cell
T8395 776-782 GO:0007601 denotes vision
T8396 808-815 NCBITaxon:species denotes species
R4603 T8389 T8388 _lexicallyChainedTo of,down-regulation
R4604 T8390 T8389 _lexicallyChainedTo expression,of

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7790 79-92 CL:0000210 denotes photoreceptor
T7791 144-157 CL:0000210 denotes photoreceptor
T7792 190-194 CL:0000604 denotes rods
T7793 204-211 NCBITaxon:species denotes species
T7794 285-289 CL:0000604 denotes rods
T7795 294-299 CL:0000573 denotes cones
T7796 520-535 _FRAGMENT denotes down-regulation
T7797 544-546 _FRAGMENT denotes of
T7798 553-563 GO:0010629 denotes expression
T7799 547-552 PR:000011403 denotes Nr2e3
T7800 574-578 CL:0000604 denotes rods
T7801 616-634 CL:0000210 denotes photoreceptor cell
T7802 776-782 GO:0007601 denotes vision
T7803 808-815 NCBITaxon:species denotes species
R4566 T7797 T7796 _lexicallyChainedTo of,down-regulation
R4567 T7798 T7797 _lexicallyChainedTo expression,of

2_test

Id Subject Object Predicate Lexical cue
16110338-1127139-85798570 301-303 1127139 denotes 52
16110338-960615-85798570 301-303 960615 denotes 52
16110338-1245613-85798570 301-303 1245613 denotes 52
16110338-7351444-85798570 301-303 7351444 denotes 52
16110338-2134853-85798570 301-303 2134853 denotes 52
16110338-3256146-85798570 301-303 3256146 denotes 52
16110338-7512947-85798570 301-303 7512947 denotes 52
16110338-2134853-85798571 425-427 2134853 denotes 56
T81875 301-303 1127139 denotes 52
T34607 301-303 960615 denotes 52
T66723 301-303 1245613 denotes 52
T88978 301-303 7351444 denotes 52
T37181 301-303 2134853 denotes 52
T79822 301-303 3256146 denotes 52
T87559 301-303 7512947 denotes 52
T60456 425-427 2134853 denotes 56