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PMC:1186732 / 45752-46572 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T10622 0-2 DT denotes An
T10623 15-26 NN denotes explanation
T10624 3-14 JJ denotes alternative
T10625 33-35 VB denotes be
T10626 27-32 MD denotes would
T10627 36-40 IN denotes that
T10628 47-49 VBZ denotes is
T10629 41-46 EX denotes there
T10630 50-54 RB denotes only
T10631 77-87 NN denotes population
T10632 55-56 DT denotes a
T10633 57-63 JJ denotes single
T10634 63-65 , denotes ,
T10635 65-76 JJ denotes homogeneous
T10636 88-90 IN denotes of
T10637 91-102 JJ denotes postmitotic
T10638 107-117 NNS denotes precursors
T10639 103-106 NN denotes rod
T10640 118-120 IN denotes in
T10641 121-124 DT denotes the
T10642 125-130 NN denotes mouse
T10643 130-132 , denotes ,
T10644 132-135 CC denotes and
T10645 136-137 DT denotes a
T10646 149-154 NN denotes event
T10647 138-148 JJ denotes stochastic
T10648 155-163 VBZ denotes triggers
T10649 164-174 NN denotes assumption
T10650 175-177 IN denotes of
T10651 178-181 DT denotes the
T10652 189-193 NN denotes fate
T10653 182-183 NN denotes S
T10654 184-188 NN denotes cone
T10655 183-184 HYPH denotes -
T10656 194-196 IN denotes in
T10657 197-198 DT denotes a
T10658 205-218 NN denotes subpopulation
T10659 199-204 JJ denotes small
T10660 219-221 IN denotes of
T10661 222-227 DT denotes these
T10662 228-233 NNS denotes cells
T10663 234-236 IN denotes in
T10664 237-240 DT denotes the
T10665 245-251 NN denotes mutant
T10666 241-244 NN denotes rd7
T10667 251-252 . denotes .
T10668 252-399 sentence denotes Recent studies in a variety of experiment systems suggest that such a stochastic, all-or-none mechanism of gene activation is commonplace [38–44].
T10669 253-259 JJ denotes Recent
T10670 260-267 NNS denotes studies
T10671 303-310 VBP denotes suggest
T10672 268-270 IN denotes in
T10673 271-272 DT denotes a
T10674 273-280 NN denotes variety
T10675 281-283 IN denotes of
T10676 284-294 NN denotes experiment
T10677 295-302 NNS denotes systems
T10678 311-315 IN denotes that
T10679 376-378 VBZ denotes is
T10680 316-320 PDT denotes such
T10681 347-356 NN denotes mechanism
T10682 321-322 DT denotes a
T10683 323-333 JJ denotes stochastic
T10684 333-335 , denotes ,
T10685 335-338 DT denotes all
T10686 338-339 HYPH denotes -
T10687 339-341 CC denotes or
T10688 341-342 HYPH denotes -
T10689 342-346 DT denotes none
T10690 357-359 IN denotes of
T10691 360-364 NN denotes gene
T10692 365-375 NN denotes activation
T10693 379-390 JJ denotes commonplace
T10694 391-392 -LRB- denotes [
T10695 392-394 CD denotes 38
T10696 394-395 SYM denotes –
T10697 395-397 CD denotes 44
T10698 397-398 -RRB- denotes ]
T10699 398-399 . denotes .
T10700 399-534 sentence denotes In this scenario, the absence of Nr2e3 would alter the probability that an unknown master control gene is expressed in rod precursors.
T10701 400-402 IN denotes In
T10702 445-450 VB denotes alter
T10703 403-407 DT denotes this
T10704 408-416 NN denotes scenario
T10705 416-418 , denotes ,
T10706 418-421 DT denotes the
T10707 422-429 NN denotes absence
T10708 430-432 IN denotes of
T10709 433-438 NN denotes Nr2e3
T10710 439-444 MD denotes would
T10711 451-454 DT denotes the
T10712 455-466 NN denotes probability
T10713 467-471 IN denotes that
T10714 506-515 VBN denotes expressed
T10715 472-474 DT denotes an
T10716 498-502 NN denotes gene
T10717 475-482 JJ denotes unknown
T10718 483-489 NN denotes master
T10719 490-497 NN denotes control
T10720 503-505 VBZ denotes is
T10721 516-518 IN denotes in
T10722 519-522 NN denotes rod
T10723 523-533 NNS denotes precursors
T10724 533-534 . denotes .
T10725 534-682 sentence denotes Once this event takes place, it would initiate an irreversible program of differentiation toward S-cone fate, albeit at a relatively low frequency.
T10726 535-539 IN denotes Once
T10727 551-556 VBZ denotes takes
T10728 540-544 DT denotes this
T10729 545-550 NN denotes event
T10730 573-581 VB denotes initiate
T10731 557-562 NN denotes place
T10732 562-564 , denotes ,
T10733 564-566 PRP denotes it
T10734 567-572 MD denotes would
T10735 582-584 DT denotes an
T10736 598-605 NN denotes program
T10737 585-597 JJ denotes irreversible
T10738 606-608 IN denotes of
T10739 609-624 NN denotes differentiation
T10740 625-631 IN denotes toward
T10741 632-633 NN denotes S
T10742 634-638 NN denotes cone
T10743 633-634 HYPH denotes -
T10744 639-643 NN denotes fate
T10745 643-645 , denotes ,
T10746 645-651 IN denotes albeit
T10747 652-654 IN denotes at
T10748 655-656 DT denotes a
T10749 672-681 NN denotes frequency
T10750 657-667 RB denotes relatively
T10751 668-671 JJ denotes low
T10752 681-682 . denotes .
T10753 682-820 sentence denotes In this way, a subset of cells from an initially homogeneous population would select the S-cone fate in an entirely probabilistic manner.
T10754 683-685 IN denotes In
T10755 761-767 VB denotes select
T10756 686-690 DT denotes this
T10757 691-694 NN denotes way
T10758 694-696 , denotes ,
T10759 696-697 DT denotes a
T10760 698-704 NN denotes subset
T10761 705-707 IN denotes of
T10762 708-713 NNS denotes cells
T10763 714-718 IN denotes from
T10764 719-721 DT denotes an
T10765 744-754 NN denotes population
T10766 722-731 RB denotes initially
T10767 732-743 JJ denotes homogeneous
T10768 755-760 MD denotes would
T10769 768-771 DT denotes the
T10770 779-783 NN denotes fate
T10771 772-773 NN denotes S
T10772 774-778 NN denotes cone
T10773 773-774 HYPH denotes -
T10774 784-786 IN denotes in
T10775 787-789 DT denotes an
T10776 813-819 NN denotes manner
T10777 790-798 RB denotes entirely
T10778 799-812 JJ denotes probabilistic
T10779 819-820 . denotes .
R6686 T10622 T10623 det An,explanation
R6688 T10623 T10625 nsubj explanation,be
R6689 T10624 T10623 amod alternative,explanation
R6691 T10626 T10625 aux would,be
R6692 T10627 T10628 mark that,is
R6694 T10628 T10625 ccomp is,be
R6695 T10629 T10628 expl there,is
R6696 T10630 T10631 advmod only,population
R6698 T10631 T10628 attr population,is
R6699 T10632 T10631 det a,population
R6700 T10633 T10631 amod single,population
R6702 T10634 T10631 punct ", ",population
R6703 T10635 T10631 amod homogeneous,population
R6704 T10636 T10631 prep of,population
R6706 T10637 T10638 amod postmitotic,precursors
R6707 T10638 T10636 pobj precursors,of
R6709 T10639 T10638 compound rod,precursors
R6710 T10640 T10628 prep in,is
R6711 T10641 T10642 det the,mouse
R6713 T10642 T10640 pobj mouse,in
R6714 T10643 T10625 punct ", ",be
R6716 T10644 T10625 cc and,be
R6717 T10645 T10646 det a,event
R6719 T10646 T10648 nsubj event,triggers
R6721 T10647 T10646 amod stochastic,event
R6722 T10648 T10625 conj triggers,be
R6723 T10655 T10654 punct -,cone
R6724 T10649 T10648 dobj assumption,triggers
R6725 T10650 T10649 prep of,assumption
R6726 T10651 T10652 det the,fate
R6727 T10652 T10650 pobj fate,of
R6728 T10656 T10648 prep in,triggers
R6729 T10653 T10654 compound S,cone
R6730 T10654 T10652 compound cone,fate
R6731 T10657 T10658 det a,subpopulation
R6732 T10658 T10656 pobj subpopulation,in
R6733 T10659 T10658 amod small,subpopulation
R6734 T10761 T10760 prep of,subset
R6735 T10660 T10658 prep of,subpopulation
R6736 T10762 T10761 pobj cells,of
R6737 T10763 T10762 prep from,cells
R6738 T10764 T10765 det an,population
R6739 T10661 T10662 det these,cells
R6740 T10765 T10763 pobj population,from
R6741 T10766 T10767 advmod initially,homogeneous
R6742 T10662 T10660 pobj cells,of
R6743 T10767 T10765 amod homogeneous,population
R6744 T10768 T10755 aux would,select
R6745 T10769 T10770 det the,fate
R6746 T10770 T10755 dobj fate,select
R6747 T10771 T10772 compound S,cone
R6748 T10663 T10648 prep in,triggers
R6749 T10772 T10770 compound cone,fate
R6750 T10773 T10772 punct -,cone
R6751 T10774 T10755 prep in,select
R6752 T10664 T10665 det the,mutant
R6753 T10775 T10776 det an,manner
R6754 T10776 T10774 pobj manner,in
R6755 T10777 T10778 advmod entirely,probabilistic
R6756 T10665 T10663 pobj mutant,in
R6757 T10778 T10776 amod probabilistic,manner
R6758 T10779 T10755 punct .,select
R6759 T10666 T10665 compound rd7,mutant
R6762 T10667 T10648 punct .,triggers
R6765 T10669 T10670 amod Recent,studies
R6770 T10670 T10671 nsubj studies,suggest
R6773 T10672 T10670 prep in,studies
R6778 T10673 T10674 det a,variety
R6779 T10674 T10672 pobj variety,in
R6783 T10675 T10674 prep of,variety
R6786 T10676 T10677 compound experiment,systems
R6791 T10677 T10675 pobj systems,of
R6795 T10678 T10679 mark that,is
R6801 T10679 T10671 ccomp is,suggest
R6805 T10680 T10681 predet such,mechanism
R6808 T10681 T10679 nsubj mechanism,is
R6812 T10682 T10681 det a,mechanism
R6816 T10683 T10681 amod stochastic,mechanism
R6819 T10684 T10681 punct ", ",mechanism
R6823 T10685 T10681 nmod all,mechanism
R6827 T10686 T10685 punct -,all
R6831 T10687 T10685 cc or,all
R6834 T10688 T10689 punct -,none
R6837 T10689 T10685 conj none,all
R6841 T10690 T10681 prep of,mechanism
R6843 T10691 T10692 compound gene,activation
R6847 T10692 T10690 pobj activation,of
R6854 T10693 T10679 acomp commonplace,is
R6858 T10694 T10695 punct [,38
R6862 T10695 T10671 parataxis 38,suggest
R6864 T10696 T10697 punct –,44
R6867 T10697 T10695 prep 44,38
R6869 T10698 T10695 punct ],38
R6870 T10699 T10671 punct .,suggest
R6873 T10701 T10702 prep In,alter
R6877 T10703 T10704 det this,scenario
R6883 T10704 T10701 pobj scenario,In
R6886 T10705 T10702 punct ", ",alter
R6890 T10706 T10707 det the,absence
R6893 T10707 T10702 nsubj absence,alter
R6894 T10708 T10707 prep of,absence
R6896 T10709 T10708 pobj Nr2e3,of
R6899 T10710 T10702 aux would,alter
R6905 T10711 T10712 det the,probability
R6909 T10712 T10702 dobj probability,alter
R6912 T10713 T10714 mark that,expressed
R6916 T10714 T10712 acl expressed,probability
R6920 T10715 T10716 det an,gene
R6924 T10716 T10714 nsubjpass gene,expressed
R6928 T10717 T10716 amod unknown,gene
R6932 T10718 T10716 compound master,gene
R6935 T10719 T10716 compound control,gene
R6939 T10720 T10714 auxpass is,expressed
R6941 T10721 T10714 prep in,expressed
R6944 T10722 T10723 compound rod,precursors
R6948 T10723 T10721 pobj precursors,in
R6951 T10724 T10702 punct .,alter
R6958 T10726 T10727 mark Once,takes
R6964 T10727 T10730 advcl takes,initiate
R6968 T10728 T10729 det this,event
R6971 T10729 T10727 nsubj event,takes
R6975 T10731 T10727 dobj place,takes
R6979 T10732 T10730 punct ", ",initiate
R6982 T10733 T10730 nsubj it,initiate
R6985 T10734 T10730 aux would,initiate
R6988 T10735 T10736 det an,program
R6992 T10736 T10730 dobj program,initiate
R6996 T10737 T10736 amod irreversible,program
R7000 T10738 T10736 prep of,program
R7003 T10739 T10738 pobj differentiation,of
R7004 T10740 T10739 prep toward,differentiation
R7009 T10741 T10742 compound S,cone
R7011 T10742 T10744 compound cone,fate
R7014 T10743 T10742 punct -,cone
R7017 T10744 T10740 pobj fate,toward
R7022 T10745 T10739 punct ", ",differentiation
R7025 T10746 T10747 dep albeit,at
R7029 T10747 T10739 nmod at,differentiation
R7031 T10748 T10749 det a,frequency
R7034 T10749 T10747 pobj frequency,at
R7037 T10750 T10751 advmod relatively,low
R7041 T10751 T10749 amod low,frequency
R7045 T10752 T10730 punct .,initiate
R7049 T10754 T10755 prep In,select
R7054 T10756 T10757 det this,way
R7062 T10757 T10754 pobj way,In
R7066 T10758 T10755 punct ", ",select
R7070 T10759 T10760 det a,subset
R7074 T10760 T10755 nsubj subset,select

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8240 95-102 GO:0007067 denotes mitotic
T8241 103-106 CL:0000604 denotes rod
T8242 125-130 NCBITaxon:10088 denotes mouse
T8243 184-188 CL:0000573 denotes cone
T8244 208-221 _FRAGMENT denotes population of
T8245 228-233 UBERON_EXT:cell_clump_or_cluster_or_group_or_mass_or_population denotes cells
T8246 228-233 CL_GO_EXT:cell denotes cells
T8247 245-251 SO_EXT:sequence_altered_entity denotes mutant
T8248 360-364 SO_EXT:0000704 denotes gene
T8249 433-438 PR_EXT:000011403 denotes Nr2e3
T8250 490-497 GO:0065007 denotes control
T8251 498-502 SO_EXT:0000704 denotes gene
T8252 506-515 GO:0010467 denotes expressed
T8253 519-522 CL:0000604 denotes rod
T8254 609-631 _FRAGMENT denotes differentiation toward
T8255 634-643 GO:0042670 denotes cone fate
T8256 634-638 CL:0000573 denotes cone
T8257 708-713 CL_GO_EXT:cell denotes cells
T8258 774-778 CL:0000573 denotes cone
R4601 T8245 T8244 _lexicallyChainedTo cells,population of
R4602 T8255 T8254 _lexicallyChainedTo cone fate,differentiation toward

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7682 95-102 GO:0007067 denotes mitotic
T7683 103-106 CL:0000604 denotes rod
T7684 125-130 NCBITaxon:10088 denotes mouse
T7685 184-188 CL:0000573 denotes cone
T7686 360-364 SO:0000704 denotes gene
T7687 433-438 PR:000011403 denotes Nr2e3
T7688 490-497 GO:0065007 denotes control
T7689 498-502 SO:0000704 denotes gene
T7690 506-515 GO:0010467 denotes expressed
T7691 519-522 CL:0000604 denotes rod
T7692 609-631 _FRAGMENT denotes differentiation toward
T7693 634-643 GO:0042670 denotes cone fate
T7694 634-638 CL:0000573 denotes cone
T7695 774-778 CL:0000573 denotes cone
R4565 T7693 T7692 _lexicallyChainedTo cone fate,differentiation toward

2_test

Id Subject Object Predicate Lexical cue
16110338-2479586-85798550 392-394 2479586 denotes 38
16110338-9732272-85798550 392-394 9732272 denotes 38
16110338-11030351-85798550 392-394 11030351 denotes 38
16110338-7624382-85798550 392-394 7624382 denotes 38
16110338-2167833-85798550 392-394 2167833 denotes 38
16110338-10723035-85798550 392-394 10723035 denotes 38
16110338-15670814-85798550 392-394 15670814 denotes 38
T97123 392-394 2479586 denotes 38
T49011 392-394 9732272 denotes 38
T56762 392-394 11030351 denotes 38
T78577 392-394 7624382 denotes 38
T64228 392-394 2167833 denotes 38
T90880 392-394 10723035 denotes 38
T78129 392-394 15670814 denotes 38