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PMC:1186732 / 39076-39960 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T9440 0-3 DT denotes The
T9441 20-27 NNS denotes changes
T9442 4-8 NN denotes gene
T9443 9-19 NN denotes expression
T9444 85-92 VBP denotes suggest
T9445 28-38 VBN denotes identified
T9446 39-41 IN denotes in
T9447 42-45 DT denotes the
T9448 57-63 NN denotes retina
T9449 46-49 NN denotes rd7
T9450 50-56 NN denotes mutant
T9451 64-66 IN denotes in
T9452 67-70 DT denotes the
T9453 79-84 NN denotes study
T9454 71-78 JJ denotes present
T9455 93-96 DT denotes the
T9456 97-103 NN denotes scheme
T9457 104-106 IN denotes of
T9458 107-111 NN denotes gene
T9459 112-122 NN denotes regulation
T9460 123-125 IN denotes in
T9461 126-131 NN denotes mouse
T9462 132-136 NNS denotes rods
T9463 137-145 VBN denotes depicted
T9464 146-148 IN denotes in
T9465 149-155 NN denotes Figure
T9466 156-157 CD denotes 8
T9467 157-158 . denotes .
T9468 158-394 sentence denotes As this diagram implies, there appear to be at least two different repressors of cone genes within rods, Nr2e3 and either Nrl itself or an additional unknown transcription factor downstream of Nrl, here termed “transcription factor X.”
T9469 159-161 IN denotes As
T9470 175-182 VBZ denotes implies
T9471 162-166 DT denotes this
T9472 167-174 NN denotes diagram
T9473 190-196 VBP denotes appear
T9474 182-184 , denotes ,
T9475 184-189 EX denotes there
T9476 197-199 TO denotes to
T9477 200-202 VB denotes be
T9478 203-205 RB denotes at
T9479 206-211 RBS denotes least
T9480 212-215 CD denotes two
T9481 226-236 NNS denotes repressors
T9482 216-225 JJ denotes different
T9483 237-239 IN denotes of
T9484 240-244 NN denotes cone
T9485 245-250 NNS denotes genes
T9486 251-257 IN denotes within
T9487 258-262 NNS denotes rods
T9488 262-264 , denotes ,
T9489 264-269 NN denotes Nr2e3
T9490 270-273 CC denotes and
T9491 274-280 CC denotes either
T9492 281-284 NN denotes Nrl
T9493 285-291 PRP denotes itself
T9494 292-294 CC denotes or
T9495 295-297 DT denotes an
T9496 331-337 NN denotes factor
T9497 298-308 JJ denotes additional
T9498 309-316 JJ denotes unknown
T9499 317-330 NN denotes transcription
T9500 338-348 RB denotes downstream
T9501 349-351 IN denotes of
T9502 352-355 NN denotes Nrl
T9503 355-357 , denotes ,
T9504 357-361 RB denotes here
T9505 362-368 VBN denotes termed
T9506 369-370 `` denotes “
T9507 370-383 NN denotes transcription
T9508 384-390 NN denotes factor
T9509 391-392 NN denotes X
T9510 392-393 . denotes .
T9511 393-394 '' denotes ”
T9512 394-611 sentence denotes In fact, it appears that the differences between type I and type II cone genes may simply depend on which repressor—Nr2e3 or transcription factor X—is primarily responsible for the regulation of the gene in question.
T9513 395-397 IN denotes In
T9514 407-414 VBZ denotes appears
T9515 398-402 NN denotes fact
T9516 402-404 , denotes ,
T9517 404-406 PRP denotes it
T9518 415-419 IN denotes that
T9519 485-491 VB denotes depend
T9520 420-423 DT denotes the
T9521 424-435 NNS denotes differences
T9522 436-443 IN denotes between
T9523 444-448 NN denotes type
T9524 468-473 NNS denotes genes
T9525 449-450 CD denotes I
T9526 451-454 CC denotes and
T9527 455-459 NN denotes type
T9528 460-462 CD denotes II
T9529 463-467 NN denotes cone
T9530 474-477 MD denotes may
T9531 478-484 RB denotes simply
T9532 492-494 IN denotes on
T9533 495-500 WDT denotes which
T9534 501-510 NN denotes repressor
T9535 543-545 VBZ denotes is
T9536 510-511 , denotes —
T9537 511-516 NN denotes Nr2e3
T9538 517-519 CC denotes or
T9539 520-533 NN denotes transcription
T9540 541-542 NN denotes X
T9541 534-540 NN denotes factor
T9542 542-543 , denotes —
T9543 546-555 RB denotes primarily
T9544 556-567 JJ denotes responsible
T9545 568-571 IN denotes for
T9546 572-575 DT denotes the
T9547 576-586 NN denotes regulation
T9548 587-589 IN denotes of
T9549 590-593 DT denotes the
T9550 594-598 NN denotes gene
T9551 599-601 IN denotes in
T9552 602-610 NN denotes question
T9553 610-611 . denotes .
T9554 611-726 sentence denotes In the case of type I genes, Nr2e3 is the primary repressor and transcription factor X is of secondary importance.
T9555 612-614 IN denotes In
T9556 647-649 VBZ denotes is
T9557 615-618 DT denotes the
T9558 619-623 NN denotes case
T9559 624-626 IN denotes of
T9560 627-631 NN denotes type
T9561 634-639 NNS denotes genes
T9562 632-633 CD denotes I
T9563 639-641 , denotes ,
T9564 641-646 NN denotes Nr2e3
T9565 650-653 DT denotes the
T9566 662-671 NN denotes repressor
T9567 654-661 JJ denotes primary
T9568 672-675 CC denotes and
T9569 676-689 NN denotes transcription
T9570 697-698 NN denotes X
T9571 690-696 NN denotes factor
T9572 699-701 VBZ denotes is
T9573 702-704 IN denotes of
T9574 705-714 JJ denotes secondary
T9575 715-725 NN denotes importance
T9576 725-726 . denotes .
T9577 726-884 sentence denotes In the case of type II genes, transcription factor X exerts the major repressive effect on transcription, and Nr2e3 plays a lesser, but still important role.
T9578 727-729 IN denotes In
T9579 780-786 VBZ denotes exerts
T9580 730-733 DT denotes the
T9581 734-738 NN denotes case
T9582 739-741 IN denotes of
T9583 742-746 NN denotes type
T9584 750-755 NNS denotes genes
T9585 747-749 CD denotes II
T9586 755-757 , denotes ,
T9587 757-770 NN denotes transcription
T9588 778-779 NN denotes X
T9589 771-777 NN denotes factor
T9590 787-790 DT denotes the
T9591 808-814 NN denotes effect
T9592 791-796 JJ denotes major
T9593 797-807 JJ denotes repressive
T9594 815-817 IN denotes on
T9595 818-831 NN denotes transcription
T9596 831-833 , denotes ,
T9597 833-836 CC denotes and
T9598 837-842 NN denotes Nr2e3
T9599 843-848 VBZ denotes plays
T9600 849-850 DT denotes a
T9601 879-883 NN denotes role
T9602 851-857 JJR denotes lesser
T9603 857-859 , denotes ,
T9604 859-862 CC denotes but
T9605 863-868 RB denotes still
T9606 869-878 JJ denotes important
T9607 883-884 . denotes .
R5551 T9440 T9441 det The,changes
R5553 T9441 T9444 nsubj changes,suggest
R5554 T9442 T9443 compound gene,expression
R5556 T9443 T9441 compound expression,changes
R5557 T9445 T9441 acl identified,changes
R5559 T9446 T9445 prep in,identified
R5560 T9447 T9448 det the,retina
R5561 T9448 T9446 pobj retina,in
R5563 T9449 T9448 compound rd7,retina
R5564 T9450 T9448 compound mutant,retina
R5565 T9451 T9445 prep in,identified
R5567 T9452 T9453 det the,study
R5568 T9453 T9451 pobj study,in
R5569 T9454 T9453 amod present,study
R5571 T9455 T9456 det the,scheme
R5572 T9456 T9444 dobj scheme,suggest
R5573 T9457 T9456 prep of,scheme
R5575 T9458 T9459 compound gene,regulation
R5576 T9459 T9457 pobj regulation,of
R5577 T9460 T9456 prep in,scheme
R5579 T9461 T9462 compound mouse,rods
R5580 T9462 T9460 pobj rods,in
R5582 T9463 T9456 acl depicted,scheme
R5583 T9464 T9463 prep in,depicted
R5584 T9465 T9464 pobj Figure,in
R5585 T9466 T9465 nummod 8,Figure
R5587 T9467 T9444 punct .,suggest
R5589 T9469 T9470 mark As,implies
R5590 T9470 T9473 advcl implies,appear
R5591 T9471 T9472 det this,diagram
R5593 T9472 T9470 nsubj diagram,implies
R5594 T9474 T9473 punct ", ",appear
R5595 T9475 T9473 expl there,appear
R5596 T9476 T9477 aux to,be
R5598 T9477 T9473 xcomp be,appear
R5599 T9478 T9479 advmod at,least
R5600 T9479 T9480 advmod least,two
R5603 T9480 T9481 nummod two,repressors
R5605 T9481 T9477 attr repressors,be
R5606 T9482 T9481 amod different,repressors
R5607 T9483 T9481 prep of,repressors
R5609 T9484 T9485 compound cone,genes
R5610 T9485 T9483 pobj genes,of
R5611 T9486 T9477 prep within,be
R5613 T9487 T9486 pobj rods,within
R5614 T9488 T9487 punct ", ",rods
R5615 T9489 T9487 conj Nr2e3,rods
R5617 T9490 T9489 cc and,Nr2e3
R5621 T9491 T9492 preconj either,Nrl
R5623 T9492 T9489 conj Nrl,Nr2e3
R5624 T9493 T9492 appos itself,Nrl
R5625 T9494 T9492 cc or,Nrl
R5627 T9495 T9496 det an,factor
R5628 T9496 T9492 conj factor,Nrl
R5629 T9497 T9496 amod additional,factor
R5631 T9498 T9496 amod unknown,factor
R5632 T9499 T9496 compound transcription,factor
R5633 T9500 T9496 advmod downstream,factor
R5635 T9501 T9500 prep of,downstream
R5636 T9502 T9501 pobj Nrl,of
R5638 T9503 T9496 punct ", ",factor
R5639 T9504 T9505 advmod here,termed
R5640 T9505 T9496 acl termed,factor
R5642 T9506 T9505 punct “,termed
R5643 T9507 T9508 compound transcription,factor
R5644 T9508 T9509 compound factor,X
R5646 T9509 T9505 oprd X,termed
R5647 T9510 T9473 punct .,appear
R5648 T9511 T9473 punct ”,appear
R5649 T9513 T9514 prep In,appears
R5651 T9515 T9513 pobj fact,In
R5652 T9516 T9514 punct ", ",appears
R5653 T9517 T9514 nsubj it,appears
R5655 T9518 T9519 mark that,depend
R5657 T9519 T9514 ccomp depend,appears
R5659 T9520 T9521 det the,differences
R5660 T9521 T9519 nsubj differences,depend
R5662 T9522 T9521 prep between,differences
R5663 T9523 T9524 nmod type,genes
R5664 T9524 T9522 pobj genes,between
R5665 T9598 T9599 nsubj Nr2e3,plays
R5666 T9525 T9523 nummod I,type
R5667 T9526 T9523 cc and,type
R5668 T9599 T9579 conj plays,exerts
R5669 T9527 T9523 conj type,type
R5670 T9528 T9527 nummod II,type
R5671 T9600 T9601 det a,role
R5672 T9529 T9524 compound cone,genes
R5673 T9530 T9519 aux may,depend
R5674 T9531 T9519 advmod simply,depend
R5675 T9601 T9599 dobj role,plays
R5676 T9532 T9519 prep on,depend
R5677 T9533 T9534 det which,repressor
R5678 T9534 T9535 dep repressor,is
R5679 T9535 T9532 pcomp is,on
R5680 T9602 T9601 amod lesser,role
R5681 T9536 T9534 punct —,repressor
R5682 T9537 T9534 nmod Nr2e3,repressor
R5683 T9603 T9602 punct ", ",lesser
R5684 T9538 T9537 cc or,Nr2e3
R5685 T9539 T9540 compound transcription,X
R5686 T9540 T9537 conj X,Nr2e3
R5687 T9604 T9602 cc but,lesser
R5688 T9541 T9540 compound factor,X
R5689 T9542 T9535 punct —,is
R5690 T9543 T9544 advmod primarily,responsible
R5691 T9605 T9606 advmod still,important
R5692 T9544 T9535 acomp responsible,is
R5693 T9545 T9544 prep for,responsible
R5694 T9546 T9547 det the,regulation
R5695 T9606 T9602 conj important,lesser
R5696 T9547 T9545 pobj regulation,for
R5697 T9548 T9547 prep of,regulation
R5698 T9549 T9550 det the,gene
R5699 T9550 T9548 pobj gene,of
R5700 T9551 T9550 prep in,gene
R5701 T9552 T9551 pobj question,in
R5702 T9607 T9579 punct .,exerts
R5703 T9553 T9514 punct .,appears
R5704 T9555 T9556 prep In,is
R5706 T9557 T9558 det the,case
R5707 T9558 T9555 pobj case,In
R5709 T9559 T9558 prep of,case
R5710 T9560 T9561 nmod type,genes
R5711 T9561 T9559 pobj genes,of
R5712 T9562 T9560 nummod I,type
R5713 T9563 T9556 punct ", ",is
R5715 T9564 T9556 nsubj Nr2e3,is
R5716 T9565 T9566 det the,repressor
R5717 T9566 T9556 attr repressor,is
R5719 T9567 T9566 amod primary,repressor
R5720 T9568 T9556 cc and,is
R5721 T9569 T9570 compound transcription,X
R5723 T9570 T9572 nsubj X,is
R5724 T9571 T9570 compound factor,X
R5725 T9572 T9556 conj is,is
R5727 T9573 T9572 prep of,is
R5728 T9574 T9575 amod secondary,importance
R5729 T9575 T9573 pobj importance,of
R5730 T9576 T9556 punct .,is
R5732 T9578 T9579 prep In,exerts
R5734 T9580 T9581 det the,case
R5735 T9581 T9578 pobj case,In
R5737 T9582 T9581 prep of,case
R5738 T9583 T9584 nmod type,genes
R5739 T9584 T9582 pobj genes,of
R5741 T9585 T9583 nummod II,type
R5742 T9586 T9579 punct ", ",exerts
R5743 T9587 T9588 compound transcription,X
R5745 T9588 T9579 nsubj X,exerts
R5746 T9589 T9588 compound factor,X
R5748 T9590 T9591 det the,effect
R5749 T9591 T9579 dobj effect,exerts
R5750 T9592 T9591 amod major,effect
R5751 T9593 T9591 amod repressive,effect
R5752 T9594 T9591 prep on,effect
R5753 T9595 T9594 pobj transcription,on
R5754 T9596 T9579 punct ", ",exerts
R5756 T9597 T9579 cc and,exerts

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8032 4-8 SO_EXT:0000704 denotes gene
T8033 4-19 GO:0010467 denotes gene expression
T8034 50-56 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T8035 57-63 UBERON:0000966 denotes retina
T8036 107-111 SO_EXT:0000704 denotes gene
T8037 112-122 GO:0065007 denotes regulation
T8038 126-131 NCBITaxon:10088 denotes mouse
T8039 132-136 CL:0000604 denotes rods
T8040 240-244 CL:0000573 denotes cone
T8041 245-250 SO_EXT:0000704 denotes genes
T8042 258-262 CL:0000604 denotes rods
T8043 264-269 PR_EXT:000011403 denotes Nr2e3
T8044 281-284 PR_EXT:000011432 denotes Nrl
T8045 317-330 GO_EXT:transcription denotes transcription
T8046 317-337 GO_EXT:transcription_factor denotes transcription factor
T8047 352-355 PR_EXT:000011432 denotes Nrl
T8048 370-383 GO_EXT:transcription denotes transcription
T8049 370-390 GO_EXT:transcription_factor denotes transcription factor
T8050 463-467 CL:0000573 denotes cone
T8051 468-473 SO_EXT:0000704 denotes genes
T8052 511-516 PR_EXT:000011403 denotes Nr2e3
T8053 520-533 GO_EXT:transcription denotes transcription
T8054 520-540 GO_EXT:transcription_factor denotes transcription factor
T8055 576-586 GO:0065007 denotes regulation
T8056 594-598 SO_EXT:0000704 denotes gene
T8057 634-639 SO_EXT:0000704 denotes genes
T8058 641-646 PR_EXT:000011403 denotes Nr2e3
T8059 676-689 GO_EXT:transcription denotes transcription
T8060 676-696 GO_EXT:transcription_factor denotes transcription factor
T8061 750-755 SO_EXT:0000704 denotes genes
T8062 757-770 GO_EXT:transcription denotes transcription
T8063 757-777 GO_EXT:transcription_factor denotes transcription factor
T8064 818-831 GO_EXT:transcription denotes transcription
T8065 837-842 PR_EXT:000011403 denotes Nr2e3

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7525 4-8 SO:0000704 denotes gene
T7526 4-19 GO:0010467 denotes gene expression
T7527 57-63 UBERON:0000966 denotes retina
T7528 107-111 SO:0000704 denotes gene
T7529 112-122 GO:0065007 denotes regulation
T7530 126-131 NCBITaxon:10088 denotes mouse
T7531 132-136 CL:0000604 denotes rods
T7532 240-244 CL:0000573 denotes cone
T7533 245-250 SO:0000704 denotes genes
T7534 258-262 CL:0000604 denotes rods
T7535 264-269 PR:000011403 denotes Nr2e3
T7536 281-284 PR:000011432 denotes Nrl
T7537 352-355 PR:000011432 denotes Nrl
T7538 463-467 CL:0000573 denotes cone
T7539 468-473 SO:0000704 denotes genes
T7540 511-516 PR:000011403 denotes Nr2e3
T7541 576-586 GO:0065007 denotes regulation
T7542 594-598 SO:0000704 denotes gene
T7543 634-639 SO:0000704 denotes genes
T7544 641-646 PR:000011403 denotes Nr2e3
T7545 750-755 SO:0000704 denotes genes
T7546 837-842 PR:000011403 denotes Nr2e3