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PMC:1186732 / 36103-36966 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T8863 76-84 NNS denotes findings
T8864 85-87 IN denotes in
T8865 88-91 PRP$ denotes our
T8866 92-97 NN denotes study
T8867 98-99 -LRB- denotes [
T8868 102-104 CD denotes 19
T8869 99-101 CD denotes 18
T8870 101-102 , denotes ,
T8871 104-105 -RRB- denotes ]
T8872 105-106 . denotes .
T8873 106-211 sentence denotes Both studies showed that cone genes in addition to S-cone opsin are derepressed in the mouse rd7 mutant.
T8874 107-111 DT denotes Both
T8875 112-119 NNS denotes studies
T8876 120-126 VBD denotes showed
T8877 127-131 IN denotes that
T8878 175-186 VBN denotes derepressed
T8879 132-136 NN denotes cone
T8880 137-142 NNS denotes genes
T8881 143-145 IN denotes in
T8882 146-154 NN denotes addition
T8883 155-157 IN denotes to
T8884 158-159 NN denotes S
T8885 160-164 NN denotes cone
T8886 159-160 HYPH denotes -
T8887 165-170 NN denotes opsin
T8888 171-174 VBP denotes are
T8889 187-189 IN denotes in
T8890 190-193 DT denotes the
T8891 204-210 NN denotes mutant
T8892 194-199 NN denotes mouse
T8893 200-203 NN denotes rd7
T8894 210-211 . denotes .
T8902 233-236 FW denotes al.
T8918 289-297 JJ denotes specific
T8919 288-289 HYPH denotes -
T8933 389-393 NNS denotes data
T8934 367-369 FW denotes in
T8935 370-374 FW denotes situ
T8936 375-388 NN denotes hybridization
T8937 394-401 VBP denotes suggest
T8938 402-406 IN denotes that
T8939 440-447 VBN denotes reduced
T8940 407-416 NN denotes rhodopsin
T8941 417-427 NN denotes expression
T8942 428-430 VBZ denotes is
T8943 431-439 RB denotes markedly
T8944 448-450 IN denotes at
T8945 451-453 NN denotes P6
T8946 453-455 , denotes ,
T8947 455-458 CC denotes but
T8948 459-463 IN denotes that
T8949 467-474 VBZ denotes attains
T8950 464-466 PRP denotes it
T8951 475-481 NNS denotes levels
T8952 482-499 JJ denotes indistinguishable
T8953 500-504 IN denotes from
T8954 505-509 JJ denotes wild
T8955 510-514 NN denotes type
T8956 509-510 HYPH denotes -
T8957 515-517 IN denotes by
T8958 518-521 NN denotes P14
T8959 521-522 . denotes .
T8960 522-728 sentence denotes Since the change in rhodopsin levels identified by Peng et al. were relatively small (an approximately 15% reduction), it is not surprising that such a difference was not detected by in situ hybridization.
T8961 523-528 IN denotes Since
T8962 586-590 VBD denotes were
T8963 529-532 DT denotes the
T8964 533-539 NN denotes change
T8965 540-542 IN denotes in
T8966 543-552 NN denotes rhodopsin
T8967 553-559 NNS denotes levels
T8968 560-570 VBN denotes identified
T8969 571-573 IN denotes by
T8970 574-578 NNP denotes Peng
T8971 579-581 FW denotes et
T8972 582-585 FW denotes al.
T8973 645-647 VBZ denotes is
T8974 591-601 RB denotes relatively
T8975 602-607 JJ denotes small
T8976 608-609 -LRB- denotes (
T8977 630-639 NN denotes reduction
T8978 609-611 DT denotes an
T8979 612-625 RB denotes approximately
T8980 626-628 CD denotes 15
T8981 628-629 NN denotes %
T8982 639-640 -RRB- denotes )
T8983 640-642 , denotes ,
T8984 642-644 PRP denotes it
T8985 648-651 RB denotes not
T8986 652-662 JJ denotes surprising
T8987 663-667 IN denotes that
T8988 694-702 VBN denotes detected
T8989 668-672 JJ denotes such
T8990 675-685 NN denotes difference
T8991 673-674 DT denotes a
T8992 686-689 VBD denotes was
T8993 690-693 RB denotes not
T8994 703-705 IN denotes by
T8995 706-708 FW denotes in
T8996 709-713 FW denotes situ
T8997 714-727 NN denotes hybridization
T8998 727-728 . denotes .
T9003 802-804 VBZ denotes is
T9004 749-751 IN denotes of
T9005 752-758 JJ denotes modest
T9006 759-769 NNS denotes reductions
T9007 770-772 IN denotes in
T9008 773-776 NN denotes rod
T9009 777-785 JJ denotes specific
T9010 776-777 HYPH denotes -
T9011 791-801 NN denotes expression
T9012 786-790 NN denotes gene
T9013 805-813 RB denotes entirely
T9014 814-816 IN denotes in
T9015 817-824 VBG denotes keeping
T9016 825-829 IN denotes with
T9017 830-833 DT denotes the
T9018 834-841 NNS denotes results
T9019 842-844 IN denotes of
T9020 845-848 DT denotes the
T9021 857-862 NN denotes study
T9022 849-856 JJ denotes present
T9023 862-863 . denotes .
T8860 64-68 JJ denotes many
T8861 69-71 IN denotes of
T8862 72-75 DT denotes the
T8896 212-214 IN denotes In
T8897 242-247 VBN denotes found
T8898 215-223 NN denotes addition
T8899 223-225 , denotes ,
T8900 225-229 NNP denotes Peng
T8850 0-3 CD denotes Two
T8851 11-18 NNS denotes studies
T8852 4-10 JJ denotes recent
T8853 24-33 VBN denotes presented
T8854 19-23 VBP denotes have
T8855 34-38 NNS denotes data
T8856 39-43 WDT denotes that
T8857 44-47 VBP denotes are
T8858 48-58 JJ denotes consistent
T8859 59-63 IN denotes with
T8895 211-362 sentence denotes In addition, Peng et al. [19] found by RT-PCR that the levels of several rod-specific genes, including rhodopsin, were modestly reduced in rd7 at P28.
T8901 230-232 FW denotes et
T8903 237-238 -LRB- denotes [
T8904 238-240 CD denotes 19
T8905 240-241 -RRB- denotes ]
T8906 248-250 IN denotes by
T8907 251-253 NN denotes RT
T8908 254-257 NN denotes PCR
T8909 253-254 HYPH denotes -
T8910 258-262 IN denotes that
T8911 340-347 VBN denotes reduced
T8912 263-266 DT denotes the
T8913 267-273 NNS denotes levels
T8914 274-276 IN denotes of
T8915 277-284 JJ denotes several
T8916 298-303 NNS denotes genes
T8917 285-288 NN denotes rod
T8928 355-357 IN denotes at
T8929 358-361 NN denotes P28
T8930 361-362 . denotes .
T8931 362-522 sentence denotes Our in situ hybridization data suggest that rhodopsin expression is markedly reduced at P6, but that it attains levels indistinguishable from wild-type by P14.
T8932 363-366 PRP$ denotes Our
T8920 303-305 , denotes ,
T8921 305-314 VBG denotes including
T8922 315-324 NN denotes rhodopsin
T8923 324-326 , denotes ,
T8924 326-330 VBD denotes were
T8925 331-339 RB denotes modestly
T8926 348-350 IN denotes in
T8927 351-354 NN denotes rd7
T8999 728-863 sentence denotes The overall finding of modest reductions in rod-specific gene expression is entirely in keeping with the results of the present study.
T9000 729-732 DT denotes The
T9001 741-748 NN denotes finding
T9002 733-740 JJ denotes overall
R5033 T8850 T8851 nummod Two,studies
R5034 T8851 T8853 nsubj studies,presented
R5035 T8852 T8851 amod recent,studies
R5036 T8854 T8853 aux have,presented
R5037 T8855 T8853 dobj data,presented
R5038 T8856 T8857 dep that,are
R5039 T8857 T8855 relcl are,data
R5040 T8858 T8857 acomp consistent,are
R5041 T8859 T8858 prep with,consistent
R5042 T8860 T8859 pobj many,with
R5043 T8861 T8860 prep of,many
R5044 T8862 T8863 det the,findings
R5045 T8863 T8861 pobj findings,of
R5046 T8864 T8860 prep in,many
R5047 T8865 T8866 poss our,study
R5048 T8866 T8864 pobj study,in
R5049 T8867 T8868 punct [,19
R5050 T8868 T8853 parataxis 19,presented
R5051 T8869 T8868 nummod 18,19
R5052 T8870 T8868 punct ",",19
R5053 T8871 T8868 punct ],19
R5054 T8872 T8853 punct .,presented
R5055 T8874 T8875 det Both,studies
R5056 T8875 T8876 nsubj studies,showed
R5057 T8877 T8878 mark that,derepressed
R5058 T8878 T8876 ccomp derepressed,showed
R5059 T8879 T8880 compound cone,genes
R5060 T8880 T8878 nsubjpass genes,derepressed
R5061 T8881 T8880 prep in,genes
R5062 T8882 T8881 pobj addition,in
R5063 T8883 T8882 prep to,addition
R5064 T8884 T8885 compound S,cone
R5065 T8885 T8887 compound cone,opsin
R5066 T8886 T8885 punct -,cone
R5067 T8887 T8883 pobj opsin,to
R5068 T8888 T8878 auxpass are,derepressed
R5069 T8889 T8878 prep in,derepressed
R5070 T8890 T8891 det the,mutant
R5071 T8891 T8889 pobj mutant,in
R5072 T8892 T8891 compound mouse,mutant
R5073 T8893 T8891 compound rd7,mutant
R5074 T8894 T8876 punct .,showed
R5075 T8896 T8897 prep In,found
R5076 T8898 T8896 pobj addition,In
R5077 T8899 T8897 punct ", ",found
R5078 T8900 T8897 nsubj Peng,found
R5079 T8901 T8902 advmod et,al.
R5080 T8902 T8900 advmod al.,Peng
R5081 T8903 T8904 punct [,19
R5082 T8904 T8900 parataxis 19,Peng
R5083 T8905 T8904 punct ],19
R5084 T8906 T8897 prep by,found
R5085 T8907 T8908 compound RT,PCR
R5086 T8908 T8906 pobj PCR,by
R5087 T8909 T8908 punct -,PCR
R5088 T8910 T8911 mark that,reduced
R5089 T8911 T8897 ccomp reduced,found
R5090 T8912 T8913 det the,levels
R5091 T8913 T8911 nsubjpass levels,reduced
R5092 T8914 T8913 prep of,levels
R5093 T8915 T8916 amod several,genes
R5094 T8916 T8914 pobj genes,of
R5095 T8917 T8918 npadvmod rod,specific
R5096 T8918 T8916 amod specific,genes
R5097 T8919 T8918 punct -,specific
R5098 T8920 T8916 punct ", ",genes
R5099 T8921 T8916 prep including,genes
R5100 T8922 T8921 pobj rhodopsin,including
R5101 T8923 T8911 punct ", ",reduced
R5102 T8924 T8911 auxpass were,reduced
R5103 T8925 T8911 advmod modestly,reduced
R5104 T8926 T8911 prep in,reduced
R5105 T8927 T8926 pobj rd7,in
R5106 T8928 T8911 prep at,reduced
R5107 T8929 T8928 pobj P28,at
R5108 T8930 T8897 punct .,found
R5109 T8932 T8933 poss Our,data
R5110 T8933 T8937 nsubj data,suggest
R5111 T8934 T8935 advmod in,situ
R5112 T8935 T8933 amod situ,data
R5113 T8936 T8933 compound hybridization,data
R5114 T8938 T8939 mark that,reduced
R5115 T8939 T8937 advcl reduced,suggest
R5116 T8940 T8941 compound rhodopsin,expression
R5117 T8941 T8939 nsubjpass expression,reduced
R5118 T8942 T8939 auxpass is,reduced
R5119 T8943 T8939 advmod markedly,reduced
R5120 T8944 T8939 prep at,reduced
R5121 T8945 T8944 pobj P6,at
R5122 T8946 T8939 punct ", ",reduced
R5123 T8947 T8939 cc but,reduced
R5124 T8948 T8949 mark that,attains
R5125 T8949 T8939 conj attains,reduced
R5126 T8950 T8949 nsubj it,attains
R5127 T8951 T8949 dobj levels,attains
R5128 T8952 T8951 amod indistinguishable,levels
R5129 T8953 T8952 prep from,indistinguishable
R5130 T8954 T8955 amod wild,type
R5131 T8955 T8953 pobj type,from
R5132 T8956 T8955 punct -,type
R5133 T8957 T8949 prep by,attains
R5134 T8958 T8957 pobj P14,by
R5135 T8959 T8937 punct .,suggest
R5136 T8961 T8962 mark Since,were
R5137 T8962 T8973 advcl were,is
R5138 T8963 T8964 det the,change
R5139 T8964 T8962 nsubj change,were
R5140 T8965 T8964 prep in,change
R5141 T8966 T8967 compound rhodopsin,levels
R5142 T8967 T8965 pobj levels,in
R5143 T8968 T8967 acl identified,levels
R5144 T8969 T8968 agent by,identified
R5145 T8970 T8969 pobj Peng,by
R5146 T8971 T8972 advmod et,al.
R5147 T8972 T8970 advmod al.,Peng
R5148 T8974 T8975 advmod relatively,small
R5149 T8975 T8962 acomp small,were
R5150 T8976 T8977 punct (,reduction
R5151 T8977 T8975 parataxis reduction,small
R5152 T8978 T8977 det an,reduction
R5153 T8979 T8980 advmod approximately,15
R5154 T8980 T8981 nummod 15,%
R5155 T8981 T8977 compound %,reduction
R5156 T8982 T8977 punct ),reduction
R5157 T8983 T8973 punct ", ",is
R5158 T8984 T8973 nsubj it,is
R5159 T8985 T8973 neg not,is
R5160 T8986 T8973 acomp surprising,is
R5161 T8987 T8988 mark that,detected
R5162 T8988 T8973 ccomp detected,is
R5163 T8989 T8990 amod such,difference
R5164 T8990 T8988 nsubjpass difference,detected
R5165 T8991 T8990 det a,difference
R5166 T8992 T8988 auxpass was,detected
R5167 T8993 T8988 neg not,detected
R5168 T8994 T8988 prep by,detected
R5169 T8995 T8996 advmod in,situ
R5170 T8996 T8997 amod situ,hybridization
R5171 T8997 T8994 pobj hybridization,by
R5172 T8998 T8973 punct .,is
R5173 T9000 T9001 det The,finding
R5174 T9001 T9003 nsubj finding,is
R5175 T9002 T9001 amod overall,finding
R5176 T9004 T9001 prep of,finding
R5177 T9005 T9006 amod modest,reductions
R5178 T9006 T9004 pobj reductions,of
R5179 T9007 T9006 prep in,reductions
R5180 T9008 T9009 npadvmod rod,specific
R5181 T9009 T9011 amod specific,expression
R5182 T9010 T9009 punct -,specific
R5183 T9011 T9007 pobj expression,in
R5184 T9012 T9011 compound gene,expression
R5185 T9013 T9014 advmod entirely,in
R5186 T9014 T9003 prep in,is
R5187 T9015 T9014 pobj keeping,in
R5188 T9016 T9015 prep with,keeping
R5189 T9017 T9018 det the,results
R5190 T9018 T9016 pobj results,with
R5191 T9019 T9018 prep of,results
R5192 T9020 T9021 det the,study
R5193 T9021 T9019 pobj study,of
R5194 T9022 T9021 amod present,study
R5195 T9023 T9003 punct .,is

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7944 132-136 CL:0000573 denotes cone
T7945 137-142 SO_EXT:0000704 denotes genes
T7946 158-170 PR_EXT:000001195 denotes S-cone opsin
T7947 160-164 CL:0000573 denotes cone
T7948 194-199 NCBITaxon:10088 denotes mouse
T7949 204-210 SO_EXT:sequence_altered_entity denotes mutant
T7950 251-253 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T7951 285-288 CL:0000604 denotes rod
T7952 298-303 SO_EXT:0000704 denotes genes
T7953 315-324 PR_EXT:000001245 denotes rhodopsin
T7954 375-388 GO:0097617 denotes hybridization
T7955 407-416 PR_EXT:000001245 denotes rhodopsin
T7956 417-427 GO:0010467 denotes expression
T7957 505-514 SO_EXT:wild_type_entity_or_quality denotes wild-type
T7958 543-552 PR_EXT:000001245 denotes rhodopsin
T7959 714-727 GO:0097617 denotes hybridization
T7960 773-776 CL:0000604 denotes rod
T7961 786-790 SO_EXT:0000704 denotes gene
T7962 786-801 GO:0010467 denotes gene expression

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7455 132-136 CL:0000573 denotes cone
T7456 137-142 SO:0000704 denotes genes
T7457 158-170 PR:000001195 denotes S-cone opsin
T7458 160-164 CL:0000573 denotes cone
T7459 194-199 NCBITaxon:10088 denotes mouse
T7460 285-288 CL:0000604 denotes rod
T7461 298-303 SO:0000704 denotes genes
T7462 315-324 PR:000001245 denotes rhodopsin
T7463 375-388 GO:0097617 denotes hybridization
T7464 407-416 PR:000001245 denotes rhodopsin
T7465 417-427 GO:0010467 denotes expression
T7466 543-552 PR:000001245 denotes rhodopsin
T7467 714-727 GO:0097617 denotes hybridization
T7468 773-776 CL:0000604 denotes rod
T7469 786-790 SO:0000704 denotes gene
T7470 786-801 GO:0010467 denotes gene expression

2_test

Id Subject Object Predicate Lexical cue
16110338-15634773-85798532 99-101 15634773 denotes 18
16110338-15689355-85798533 102-104 15689355 denotes 19
16110338-15689355-85798534 238-240 15689355 denotes 19
T30895 99-101 15634773 denotes 18
T84637 102-104 15689355 denotes 19
T69025 238-240 15689355 denotes 19