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PMC:1186732 / 33928-34733 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T8429 0-8 IN denotes Although
T8430 43-55 VBD denotes demonstrated
T8431 9-14 NNS denotes genes
T8432 15-22 VBG denotes showing
T8433 23-27 NN denotes type
T8434 30-42 NN denotes derepression
T8435 28-29 CD denotes I
T8436 124-131 VBP denotes suggest
T8437 56-64 NN denotes staining
T8438 65-67 IN denotes in
T8439 68-71 DT denotes the
T8440 72-80 NN denotes majority
T8441 81-83 IN denotes of
T8442 84-89 NNS denotes cells
T8443 90-92 IN denotes in
T8444 93-96 DT denotes the
T8445 97-100 NN denotes ONL
T8446 100-102 , denotes ,
T8447 102-105 CD denotes two
T8448 106-111 NNS denotes lines
T8449 112-114 IN denotes of
T8450 115-123 NN denotes evidence
T8451 132-136 IN denotes that
T8452 168-179 VBN denotes derepressed
T8453 137-142 DT denotes these
T8454 143-148 NNS denotes genes
T8455 149-152 VBP denotes are
T8456 153-156 RB denotes not
T8457 157-167 RB denotes completely
T8458 180-182 IN denotes in
T8459 183-188 DT denotes these
T8460 189-194 NNS denotes cells
T8461 195-199 WRB denotes when
T8462 200-208 VBN denotes compared
T8463 209-211 IN denotes to
T8464 212-217 PRP$ denotes their
T8465 218-228 NN denotes expression
T8466 229-231 IN denotes in
T8572 756-761 NNS denotes cells
T8573 762-766 IN denotes than
T8574 767-769 IN denotes in
T8575 770-773 DT denotes the
T8576 781-786 NNS denotes cells
T8577 774-780 NN denotes hybrid
T8578 787-789 IN denotes of
T8579 790-793 DT denotes the
T8580 798-804 NN denotes retina
T8581 794-797 NN denotes rd7
T8582 804-805 . denotes .
T8467 232-233 NN denotes S
T8468 234-239 NN denotes opsin
T8469 233-234 HYPH denotes -
T8470 240-250 VBG denotes expressing
T8471 239-240 HYPH denotes –
T8472 251-256 NNS denotes cones
T8473 256-257 . denotes .
T8474 257-656 sentence denotes First, close evaluation of the staining pattern of a number of type I genes in the rd7 mutant retina (e.g., see Table S1, genes G9, G19, and G24), reveals that, in addition to the background staining throughout the ONL, there is a more darkly staining subpopulation of cells scattered throughout this layer in a distribution corresponding to that of the supernumerary S-cone opsin-expressing cells.
T8475 258-263 RB denotes First
T8476 405-412 VBZ denotes reveals
T8477 263-265 , denotes ,
T8478 265-270 JJ denotes close
T8479 271-281 NN denotes evaluation
T8480 282-284 IN denotes of
T8481 285-288 DT denotes the
T8482 298-305 NN denotes pattern
T8483 289-297 NN denotes staining
T8484 306-308 IN denotes of
T8485 309-310 DT denotes a
T8486 311-317 NN denotes number
T8487 318-320 IN denotes of
T8488 321-325 NN denotes type
T8489 328-333 NNS denotes genes
T8490 326-327 CD denotes I
T8491 334-336 IN denotes in
T8492 337-340 DT denotes the
T8493 352-358 NN denotes retina
T8494 341-344 NN denotes rd7
T8495 345-351 NN denotes mutant
T8496 359-360 -LRB- denotes (
T8497 366-369 VB denotes see
T8498 360-364 FW denotes e.g.
T8499 364-366 , denotes ,
T8500 370-375 NN denotes Table
T8501 376-378 NN denotes S1
T8502 378-380 , denotes ,
T8503 380-385 NNS denotes genes
T8504 386-388 NN denotes G9
T8505 388-390 , denotes ,
T8506 390-393 NN denotes G19
T8507 393-395 , denotes ,
T8508 395-398 CC denotes and
T8509 399-402 NN denotes G24
T8510 402-403 -RRB- denotes )
T8511 403-405 , denotes ,
T8512 413-417 IN denotes that
T8513 484-486 VBZ denotes is
T8514 417-419 , denotes ,
T8515 419-421 IN denotes in
T8516 422-430 NN denotes addition
T8517 431-433 IN denotes to
T8518 434-437 DT denotes the
T8519 449-457 NN denotes staining
T8520 438-448 NN denotes background
T8521 458-468 IN denotes throughout
T8522 469-472 DT denotes the
T8523 473-476 NN denotes ONL
T8524 476-478 , denotes ,
T8525 478-483 EX denotes there
T8526 487-488 DT denotes a
T8527 510-523 NN denotes subpopulation
T8528 489-493 RBR denotes more
T8529 494-500 RB denotes darkly
T8530 501-509 VBG denotes staining
T8531 524-526 IN denotes of
T8532 527-532 NNS denotes cells
T8533 533-542 VBN denotes scattered
T8534 543-553 IN denotes throughout
T8535 554-558 DT denotes this
T8536 559-564 NN denotes layer
T8537 565-567 IN denotes in
T8538 568-569 DT denotes a
T8539 570-582 NN denotes distribution
T8540 583-596 VBG denotes corresponding
T8541 597-599 IN denotes to
T8542 600-604 DT denotes that
T8543 605-607 IN denotes of
T8544 608-611 DT denotes the
T8545 650-655 NNS denotes cells
T8546 612-625 JJ denotes supernumerary
T8547 626-627 NN denotes S
T8548 628-632 NN denotes cone
T8549 627-628 HYPH denotes -
T8550 633-638 NN denotes opsin
T8551 639-649 VBG denotes expressing
T8552 638-639 HYPH denotes -
T8553 655-656 . denotes .
T8554 656-805 sentence denotes This pattern of staining suggests that these genes are more highly expressed in S-opsin expressing cells than in the hybrid cells of the rd7 retina.
T8555 657-661 DT denotes This
T8556 662-669 NN denotes pattern
T8557 682-690 VBZ denotes suggests
T8558 670-672 IN denotes of
T8559 673-681 NN denotes staining
T8560 691-695 IN denotes that
T8561 724-733 VBN denotes expressed
T8562 696-701 DT denotes these
T8563 702-707 NNS denotes genes
T8564 708-711 VBP denotes are
T8565 712-716 RBR denotes more
T8566 717-723 RB denotes highly
T8567 734-736 IN denotes in
T8568 737-738 NN denotes S
T8569 739-744 NN denotes opsin
T8570 738-739 HYPH denotes -
T8571 745-755 VBG denotes expressing
R4634 T8429 T8430 mark Although,demonstrated
R4635 T8430 T8436 advcl demonstrated,suggest
R4636 T8431 T8430 nsubj genes,demonstrated
R4637 T8432 T8431 acl showing,genes
R4638 T8433 T8434 nmod type,derepression
R4639 T8434 T8432 dobj derepression,showing
R4640 T8435 T8433 nummod I,type
R4641 T8437 T8430 dobj staining,demonstrated
R4642 T8438 T8430 prep in,demonstrated
R4643 T8439 T8440 det the,majority
R4644 T8440 T8438 pobj majority,in
R4645 T8441 T8440 prep of,majority
R4646 T8442 T8441 pobj cells,of
R4647 T8443 T8430 prep in,demonstrated
R4648 T8444 T8445 det the,ONL
R4649 T8445 T8443 pobj ONL,in
R4650 T8446 T8436 punct ", ",suggest
R4651 T8447 T8448 nummod two,lines
R4652 T8448 T8436 nsubj lines,suggest
R4653 T8449 T8448 prep of,lines
R4654 T8450 T8449 pobj evidence,of
R4655 T8451 T8452 mark that,derepressed
R4656 T8452 T8436 ccomp derepressed,suggest
R4657 T8453 T8454 det these,genes
R4658 T8454 T8452 nsubjpass genes,derepressed
R4659 T8455 T8452 auxpass are,derepressed
R4660 T8456 T8452 neg not,derepressed
R4661 T8457 T8452 advmod completely,derepressed
R4662 T8458 T8452 prep in,derepressed
R4663 T8459 T8460 det these,cells
R4664 T8460 T8458 pobj cells,in
R4665 T8461 T8462 advmod when,compared
R4666 T8462 T8452 advcl compared,derepressed
R4667 T8463 T8462 prep to,compared
R4668 T8464 T8465 poss their,expression
R4669 T8465 T8463 pobj expression,to
R4670 T8466 T8465 prep in,expression
R4671 T8467 T8468 compound S,opsin
R4672 T8468 T8470 npadvmod opsin,expressing
R4673 T8469 T8468 punct -,opsin
R4674 T8470 T8472 amod expressing,cones
R4675 T8471 T8470 punct –,expressing
R4676 T8472 T8466 pobj cones,in
R4677 T8473 T8436 punct .,suggest
R4678 T8475 T8476 advmod First,reveals
R4679 T8477 T8476 punct ", ",reveals
R4680 T8478 T8479 amod close,evaluation
R4681 T8479 T8476 nsubj evaluation,reveals
R4682 T8480 T8479 prep of,evaluation
R4683 T8481 T8482 det the,pattern
R4684 T8482 T8480 pobj pattern,of
R4685 T8483 T8482 compound staining,pattern
R4686 T8484 T8482 prep of,pattern
R4687 T8485 T8486 det a,number
R4688 T8486 T8484 pobj number,of
R4689 T8487 T8486 prep of,number
R4690 T8488 T8489 nmod type,genes
R4691 T8489 T8487 pobj genes,of
R4692 T8490 T8488 nummod I,type
R4693 T8491 T8489 prep in,genes
R4694 T8492 T8493 det the,retina
R4695 T8493 T8491 pobj retina,in
R4696 T8494 T8493 compound rd7,retina
R4697 T8495 T8493 compound mutant,retina
R4698 T8496 T8497 punct (,see
R4699 T8497 T8489 parataxis see,genes
R4700 T8498 T8497 advmod e.g.,see
R4701 T8499 T8497 punct ", ",see
R4702 T8500 T8501 compound Table,S1
R4703 T8501 T8497 dobj S1,see
R4704 T8502 T8501 punct ", ",S1
R4705 T8503 T8504 compound genes,G9
R4706 T8504 T8501 appos G9,S1
R4707 T8505 T8504 punct ", ",G9
R4708 T8506 T8504 conj G19,G9
R4709 T8507 T8506 punct ", ",G19
R4710 T8508 T8506 cc and,G19
R4711 T8509 T8506 conj G24,G19
R4712 T8510 T8497 punct ),see
R4713 T8511 T8476 punct ", ",reveals
R4714 T8512 T8513 mark that,is
R4715 T8513 T8476 ccomp is,reveals
R4716 T8514 T8513 punct ", ",is
R4717 T8515 T8513 prep in,is
R4718 T8516 T8515 pobj addition,in
R4719 T8517 T8516 prep to,addition
R4720 T8518 T8519 det the,staining
R4721 T8519 T8517 pobj staining,to
R4722 T8520 T8519 compound background,staining
R4723 T8521 T8519 prep throughout,staining
R4724 T8522 T8523 det the,ONL
R4725 T8523 T8521 pobj ONL,throughout
R4726 T8524 T8513 punct ", ",is
R4727 T8525 T8513 expl there,is
R4728 T8526 T8527 det a,subpopulation
R4729 T8527 T8513 attr subpopulation,is
R4730 T8528 T8529 advmod more,darkly
R4731 T8529 T8530 advmod darkly,staining
R4732 T8530 T8527 amod staining,subpopulation
R4733 T8531 T8527 prep of,subpopulation
R4734 T8532 T8531 pobj cells,of
R4735 T8533 T8527 acl scattered,subpopulation
R4736 T8534 T8533 prep throughout,scattered
R4737 T8535 T8536 det this,layer
R4738 T8536 T8534 pobj layer,throughout
R4739 T8537 T8533 prep in,scattered
R4740 T8538 T8539 det a,distribution
R4741 T8539 T8537 pobj distribution,in
R4742 T8540 T8539 acl corresponding,distribution
R4743 T8541 T8540 prep to,corresponding
R4744 T8542 T8541 pobj that,to
R4745 T8543 T8542 prep of,that
R4746 T8544 T8545 det the,cells
R4747 T8545 T8543 pobj cells,of
R4748 T8546 T8545 amod supernumerary,cells
R4749 T8547 T8548 nmod S,cone
R4750 T8548 T8545 nmod cone,cells
R4751 T8549 T8548 punct -,cone
R4752 T8550 T8551 npadvmod opsin,expressing
R4753 T8551 T8545 amod expressing,cells
R4754 T8552 T8551 punct -,expressing
R4755 T8553 T8476 punct .,reveals
R4756 T8555 T8556 det This,pattern
R4757 T8556 T8557 nsubj pattern,suggests
R4758 T8558 T8556 prep of,pattern
R4759 T8559 T8558 pobj staining,of
R4760 T8560 T8561 mark that,expressed
R4761 T8561 T8557 ccomp expressed,suggests
R4762 T8562 T8563 det these,genes
R4763 T8563 T8561 nsubjpass genes,expressed
R4764 T8564 T8561 auxpass are,expressed
R4765 T8565 T8566 advmod more,highly
R4766 T8566 T8561 advmod highly,expressed
R4767 T8567 T8561 prep in,expressed
R4768 T8568 T8569 compound S,opsin
R4769 T8569 T8571 npadvmod opsin,expressing
R4770 T8570 T8569 punct -,opsin
R4771 T8571 T8572 amod expressing,cells
R4772 T8572 T8567 pobj cells,in
R4773 T8573 T8561 prep than,expressed
R4774 T8574 T8573 prep in,than
R4775 T8575 T8576 det the,cells
R4776 T8576 T8574 pobj cells,in
R4777 T8577 T8576 compound hybrid,cells
R4778 T8578 T8576 prep of,cells
R4779 T8579 T8580 det the,retina
R4780 T8580 T8578 pobj retina,of
R4781 T8581 T8580 compound rd7,retina
R4782 T8582 T8557 punct .,suggests

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7862 9-14 SO_EXT:0000704 denotes genes
T7863 84-89 CL_GO_EXT:cell denotes cells
T7864 97-100 UBERON:0001789 denotes ONL
T7865 143-148 SO_EXT:0000704 denotes genes
T7866 189-194 CL_GO_EXT:cell denotes cells
T7867 218-228 GO:0010467 denotes expression
T7868 232-239 PR_EXT:000001195 denotes S-opsin
T7869 240-250 GO:0010467 denotes expressing
T7870 251-256 CL:0000573 denotes cones
T7871 328-333 SO_EXT:0000704 denotes genes
T7872 345-351 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T7873 352-358 UBERON:0000966 denotes retina
T7874 380-385 SO_EXT:0000704 denotes genes
T7875 473-476 UBERON:0001789 denotes ONL
T7876 513-532 UBERON_EXT:cell_clump_or_cluster_or_group_or_mass_or_population denotes population of cells
T7877 527-532 CL_GO_EXT:cell denotes cells
T7878 626-638 PR_EXT:000001195 denotes S-cone opsin
T7879 628-632 CL:0000573 denotes cone
T7880 639-649 GO:0010467 denotes expressing
T7881 650-655 CL_GO_EXT:cell denotes cells
T7882 702-707 SO_EXT:0000704 denotes genes
T7883 724-733 GO:0010467 denotes expressed
T7884 737-744 PR_EXT:000001195 denotes S-opsin
T7885 745-755 GO:0010467 denotes expressing
T7886 756-761 CL_GO_EXT:cell denotes cells
T7887 781-786 CL_GO_EXT:cell denotes cells
T7888 781-789 _FRAGMENT denotes cells of
T7889 798-804 CL:0009004 denotes retina
T7890 798-804 UBERON:0000966 denotes retina
R4597 T7889 T7888 _lexicallyChainedTo retina,cells of

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7394 9-14 SO:0000704 denotes genes
T7395 97-100 UBERON:0001789 denotes ONL
T7396 143-148 SO:0000704 denotes genes
T7397 218-228 GO:0010467 denotes expression
T7398 232-239 PR:000001195 denotes S-opsin
T7399 240-250 GO:0010467 denotes expressing
T7400 251-256 CL:0000573 denotes cones
T7401 328-333 SO:0000704 denotes genes
T7402 352-358 UBERON:0000966 denotes retina
T7403 380-385 SO:0000704 denotes genes
T7404 473-476 UBERON:0001789 denotes ONL
T7405 626-638 PR:000001195 denotes S-cone opsin
T7406 628-632 CL:0000573 denotes cone
T7407 639-649 GO:0010467 denotes expressing
T7408 702-707 SO:0000704 denotes genes
T7409 724-733 GO:0010467 denotes expressed
T7410 737-744 PR:000001195 denotes S-opsin
T7411 745-755 GO:0010467 denotes expressing
T7412 781-789 _FRAGMENT denotes cells of
T7413 798-804 CL:0009004 denotes retina
T7414 798-804 UBERON:0000966 denotes retina
R4561 T7413 T7412 _lexicallyChainedTo retina,cells of