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PMC:1186732 / 3070-3744 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T705 0-8 VBN denotes Enhanced
T706 16-24 NN denotes syndrome
T707 9-10 NN denotes S
T708 11-15 NN denotes cone
T709 10-11 HYPH denotes -
T710 32-34 VBZ denotes is
T711 25-26 -LRB- denotes (
T712 26-30 NN denotes ESCS
T713 30-31 -RRB- denotes )
T714 35-37 DT denotes an
T715 46-53 NN denotes disease
T716 38-45 JJ denotes unusual
T717 54-56 IN denotes of
T718 57-71 NNS denotes photoreceptors
T719 72-76 WDT denotes that
T720 77-85 VBZ denotes includes
T721 86-91 NN denotes night
T722 92-101 NN denotes blindness
T723 102-103 -LRB- denotes (
T724 103-113 JJ denotes suggestive
T725 114-116 IN denotes of
T726 117-120 NN denotes rod
T727 121-132 NN denotes dysfunction
T728 132-133 -RRB- denotes )
T729 133-135 , denotes ,
T730 135-137 DT denotes an
T731 147-164 NN denotes electroretinogram
T732 138-146 JJ denotes abnormal
T733 165-166 -LRB- denotes (
T734 166-169 NN denotes ERG
T735 169-170 -RRB- denotes )
T736 171-175 IN denotes with
T737 176-177 DT denotes a
T738 178-186 NN denotes waveform
T739 187-191 WDT denotes that
T740 192-194 VBZ denotes is
T741 195-201 RB denotes nearly
T742 202-211 JJ denotes identical
T743 212-217 IN denotes under
T744 218-222 CC denotes both
T745 223-228 NN denotes light
T746 238-248 NN denotes adaptation
T747 229-232 CC denotes and
T748 233-237 NN denotes dark
T749 248-250 , denotes ,
T750 250-253 CC denotes and
T751 254-256 DT denotes an
T752 267-278 NN denotes sensitivity
T753 257-266 VBN denotes increased
T754 279-281 IN denotes of
T755 282-285 DT denotes the
T756 286-289 NN denotes ERG
T757 290-292 IN denotes to
T758 293-298 JJ denotes short
T759 299-309 NN denotes wavelength
T760 298-299 HYPH denotes -
T761 310-315 NN denotes light
T762 316-317 -LRB- denotes [
T763 319-320 CD denotes 2
T764 317-318 CD denotes 1
T765 318-319 , denotes ,
T766 320-321 -RRB- denotes ]
T767 321-322 . denotes .
T768 322-509 sentence denotes The disease is caused by mutations in the orphan nuclear receptor transcription factor NR2E3 (also known as photoreceptor nuclear receptor), which is expressed exclusively in rods [3,4].
T769 323-326 DT denotes The
T770 327-334 NN denotes disease
T771 338-344 VBN denotes caused
T772 335-337 VBZ denotes is
T773 345-347 IN denotes by
T774 348-357 NNS denotes mutations
T775 358-360 IN denotes in
T776 361-364 DT denotes the
T777 403-409 NN denotes factor
T778 365-371 NN denotes orphan
T779 380-388 NN denotes receptor
T780 372-379 JJ denotes nuclear
T781 389-402 NN denotes transcription
T782 410-415 NN denotes NR2E3
T783 416-417 -LRB- denotes (
T784 417-421 RB denotes also
T785 422-427 VBN denotes known
T786 428-430 IN denotes as
T787 431-444 NN denotes photoreceptor
T788 453-461 NN denotes receptor
T789 445-452 JJ denotes nuclear
T790 461-462 -RRB- denotes )
T791 462-464 , denotes ,
T792 464-469 WDT denotes which
T793 473-482 VBN denotes expressed
T794 470-472 VBZ denotes is
T795 483-494 RB denotes exclusively
T796 495-497 IN denotes in
T797 498-502 NNS denotes rods
T798 503-504 -LRB- denotes [
T799 506-507 CD denotes 4
T800 504-505 CD denotes 3
T801 505-506 , denotes ,
T802 507-508 -RRB- denotes ]
T803 508-509 . denotes .
T804 509-674 sentence denotes Recent human genetic studies have also demonstrated mutations in this gene in Goldmann-Favre syndrome and many cases of clumped pigmentary retinal degeneration [5].
T805 510-516 JJ denotes Recent
T806 531-538 NNS denotes studies
T807 517-522 JJ denotes human
T808 523-530 JJ denotes genetic
T809 549-561 VBN denotes demonstrated
T810 539-543 VBP denotes have
T811 544-548 RB denotes also
T812 562-571 NNS denotes mutations
T813 572-574 IN denotes in
T814 575-579 DT denotes this
T815 580-584 NN denotes gene
T816 585-587 IN denotes in
T817 588-596 NNP denotes Goldmann
T818 597-602 NNP denotes Favre
T819 596-597 HYPH denotes -
T820 603-611 NN denotes syndrome
T821 612-615 CC denotes and
T822 616-620 JJ denotes many
T823 621-626 NNS denotes cases
T824 627-629 IN denotes of
T825 630-637 VBN denotes clumped
T826 657-669 NN denotes degeneration
T827 638-648 JJ denotes pigmentary
T828 649-656 JJ denotes retinal
T829 670-671 -LRB- denotes [
T830 671-672 CD denotes 5
T831 672-673 -RRB- denotes ]
T832 673-674 . denotes .
R295 T705 T706 amod Enhanced,syndrome
R296 T706 T710 nsubj syndrome,is
R297 T707 T708 compound S,cone
R298 T708 T706 compound cone,syndrome
R299 T709 T708 punct -,cone
R300 T711 T706 punct (,syndrome
R301 T712 T706 appos ESCS,syndrome
R302 T713 T710 punct ),is
R303 T714 T715 det an,disease
R304 T715 T710 attr disease,is
R305 T716 T715 amod unusual,disease
R306 T717 T715 prep of,disease
R307 T718 T717 pobj photoreceptors,of
R308 T719 T720 dep that,includes
R309 T720 T715 relcl includes,disease
R310 T721 T722 compound night,blindness
R311 T722 T720 dobj blindness,includes
R312 T723 T722 punct (,blindness
R313 T724 T722 amod suggestive,blindness
R314 T725 T724 prep of,suggestive
R315 T726 T727 compound rod,dysfunction
R316 T727 T725 pobj dysfunction,of
R317 T728 T722 punct ),blindness
R318 T729 T722 punct ", ",blindness
R319 T730 T731 det an,electroretinogram
R320 T731 T722 conj electroretinogram,blindness
R321 T732 T731 amod abnormal,electroretinogram
R322 T733 T731 punct (,electroretinogram
R323 T734 T731 appos ERG,electroretinogram
R324 T735 T731 punct ),electroretinogram
R325 T736 T731 prep with,electroretinogram
R326 T737 T738 det a,waveform
R327 T738 T736 pobj waveform,with
R328 T739 T740 dep that,is
R329 T740 T738 relcl is,waveform
R330 T741 T742 advmod nearly,identical
R331 T742 T740 acomp identical,is
R332 T743 T740 prep under,is
R333 T744 T745 preconj both,light
R334 T745 T746 nmod light,adaptation
R335 T746 T743 pobj adaptation,under
R336 T747 T745 cc and,light
R337 T748 T745 conj dark,light
R338 T749 T731 punct ", ",electroretinogram
R339 T750 T731 cc and,electroretinogram
R340 T751 T752 det an,sensitivity
R341 T752 T731 conj sensitivity,electroretinogram
R342 T753 T752 amod increased,sensitivity
R343 T754 T752 prep of,sensitivity
R344 T755 T756 det the,ERG
R345 T756 T754 pobj ERG,of
R346 T757 T752 prep to,sensitivity
R347 T758 T759 amod short,wavelength
R348 T759 T761 compound wavelength,light
R349 T760 T759 punct -,wavelength
R350 T761 T757 pobj light,to
R351 T762 T763 punct [,2
R352 T763 T710 parataxis 2,is
R353 T764 T763 nummod 1,2
R354 T765 T763 punct ",",2
R355 T766 T763 punct ],2
R356 T767 T710 punct .,is
R357 T769 T770 det The,disease
R358 T770 T771 nsubjpass disease,caused
R359 T772 T771 auxpass is,caused
R360 T773 T771 agent by,caused
R361 T774 T773 pobj mutations,by
R362 T775 T774 prep in,mutations
R363 T776 T777 det the,factor
R364 T777 T775 pobj factor,in
R365 T778 T779 nmod orphan,receptor
R366 T779 T777 compound receptor,factor
R367 T780 T779 amod nuclear,receptor
R368 T781 T777 compound transcription,factor
R369 T782 T777 appos NR2E3,factor
R370 T783 T777 punct (,factor
R371 T784 T785 advmod also,known
R372 T785 T777 acl known,factor
R373 T786 T785 prep as,known
R374 T787 T788 nmod photoreceptor,receptor
R375 T788 T786 pobj receptor,as
R376 T789 T788 amod nuclear,receptor
R377 T790 T777 punct ),factor
R378 T791 T777 punct ", ",factor
R379 T792 T793 dep which,expressed
R380 T793 T777 relcl expressed,factor
R381 T794 T793 auxpass is,expressed
R382 T795 T793 advmod exclusively,expressed
R383 T796 T793 prep in,expressed
R384 T797 T796 pobj rods,in
R385 T798 T799 punct [,4
R386 T799 T771 parataxis 4,caused
R387 T800 T799 nummod 3,4
R388 T801 T799 punct ",",4
R389 T802 T799 punct ],4
R390 T803 T771 punct .,caused
R391 T805 T806 amod Recent,studies
R392 T806 T809 nsubj studies,demonstrated
R393 T807 T806 amod human,studies
R394 T808 T806 amod genetic,studies
R395 T810 T809 aux have,demonstrated
R396 T811 T809 advmod also,demonstrated
R397 T812 T809 dobj mutations,demonstrated
R398 T813 T809 prep in,demonstrated
R399 T814 T815 det this,gene
R400 T815 T813 pobj gene,in
R401 T816 T809 prep in,demonstrated
R402 T817 T818 compound Goldmann,Favre
R403 T818 T820 compound Favre,syndrome
R404 T819 T818 punct -,Favre
R405 T820 T816 pobj syndrome,in
R406 T821 T820 cc and,syndrome
R407 T822 T823 amod many,cases
R408 T823 T820 conj cases,syndrome
R409 T824 T823 prep of,cases
R410 T825 T826 amod clumped,degeneration
R411 T826 T824 pobj degeneration,of
R412 T827 T826 amod pigmentary,degeneration
R413 T828 T826 amod retinal,degeneration
R414 T829 T830 punct [,5
R415 T830 T809 parataxis 5,demonstrated
R416 T831 T830 punct ],5
R417 T832 T809 punct .,demonstrated

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T620 11-15 CL:0000573 denotes cone
T621 57-71 CL:0000210 denotes photoreceptors
T622 117-120 CL:0000604 denotes rod
T623 233-248 GO:1990603 denotes dark adaptation
T624 348-357 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T625 365-371 SO:0000910 denotes orphan
T626 372-379 GO:0005634 denotes nuclear
T627 380-388 GO_EXT:0004872 denotes receptor
T628 389-402 GO_EXT:transcription denotes transcription
T629 389-409 GO_EXT:transcription_factor denotes transcription factor
T630 410-415 PR_EXT:000011403 denotes NR2E3
T631 431-444 CL:0000210 denotes photoreceptor
T632 431-461 PR_EXT:000011403 denotes photoreceptor nuclear receptor
T633 445-452 GO:0005634 denotes nuclear
T634 453-461 GO_EXT:0004872 denotes receptor
T635 473-482 GO:0010467 denotes expressed
T636 498-502 CL:0000604 denotes rods
T637 517-522 NCBITaxon:9606 denotes human
T638 523-530 SO_EXT:0000704 denotes genetic
T639 562-571 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T640 580-584 SO_EXT:0000704 denotes gene
T641 638-648 CHEBI_EXT:26130 denotes pigmentary
T642 649-656 UBERON:0000966 denotes retinal

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T557 11-15 CL:0000573 denotes cone
T558 57-71 CL:0000210 denotes photoreceptors
T559 117-120 CL:0000604 denotes rod
T560 233-248 GO:1990603 denotes dark adaptation
T561 365-371 SO:0000910 denotes orphan
T562 372-379 GO:0005634 denotes nuclear
T563 410-415 PR:000011403 denotes NR2E3
T564 431-444 CL:0000210 denotes photoreceptor
T565 431-461 PR:000011403 denotes photoreceptor nuclear receptor
T566 445-452 GO:0005634 denotes nuclear
T567 473-482 GO:0010467 denotes expressed
T568 498-502 CL:0000604 denotes rods
T569 517-522 NCBITaxon:9606 denotes human
T570 523-530 SO:0000704 denotes genetic
T571 580-584 SO:0000704 denotes gene
T572 638-648 CHEBI:26130 denotes pigmentary
T573 649-656 UBERON:0000966 denotes retinal

2_test

Id Subject Object Predicate Lexical cue
16110338-2335450-85798498 317-318 2335450 denotes 1
16110338-7645276-85798499 319-320 7645276 denotes 2
16110338-10655056-85798500 504-505 10655056 denotes 3
16110338-15277507-85798501 506-507 15277507 denotes 4
16110338-12963616-85798502 671-672 12963616 denotes 5
T34232 317-318 2335450 denotes 1
T59131 319-320 7645276 denotes 2
T82344 504-505 10655056 denotes 3
T22466 506-507 15277507 denotes 4
T58203 671-672 12963616 denotes 5