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PMC:1186732 / 153-1790 JSONTXT

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Id Subject Object Predicate Lexical cue
T200 0-96 sentence denotes Rod and cone photoreceptors subserve vision under dim and bright light conditions, respectively.
T201 0-3 NN denotes Rod
T202 13-27 NNS denotes photoreceptors
T203 4-7 CC denotes and
T204 8-12 NN denotes cone
T205 28-36 VBP denotes subserve
T206 37-43 NN denotes vision
T207 44-49 IN denotes under
T208 50-53 JJ denotes dim
T209 71-81 NNS denotes conditions
T210 54-57 CC denotes and
T211 58-64 JJ denotes bright
T212 65-70 NN denotes light
T213 81-83 , denotes ,
T214 83-95 RB denotes respectively
T215 95-96 . denotes .
T216 96-240 sentence denotes The differences in their function are thought to stem from their different gene expression patterns, morphologies, and synaptic connectivities.
T217 97-100 DT denotes The
T218 101-112 NNS denotes differences
T219 135-142 VBN denotes thought
T220 113-115 IN denotes in
T221 116-121 PRP$ denotes their
T222 122-130 NN denotes function
T223 131-134 VBP denotes are
T224 143-145 TO denotes to
T225 146-150 VB denotes stem
T226 151-155 IN denotes from
T227 156-161 PRP$ denotes their
T228 188-196 NNS denotes patterns
T229 162-171 JJ denotes different
T230 172-176 NN denotes gene
T231 177-187 NN denotes expression
T232 196-198 , denotes ,
T233 198-210 NNS denotes morphologies
T234 210-212 , denotes ,
T235 212-215 CC denotes and
T236 216-224 JJ denotes synaptic
T237 225-239 NNS denotes connectivities
T238 239-240 . denotes .
T239 240-401 sentence denotes In this study, we have examined the photoreceptor cells of the retinal degeneration 7 (rd7) mutant mouse, a model for the human enhanced S-cone syndrome (ESCS).
T240 241-243 IN denotes In
T241 264-272 VBN denotes examined
T242 244-248 DT denotes this
T243 249-254 NN denotes study
T244 254-256 , denotes ,
T245 256-258 PRP denotes we
T246 259-263 VBP denotes have
T247 273-276 DT denotes the
T248 291-296 NNS denotes cells
T249 277-290 NN denotes photoreceptor
T250 297-299 IN denotes of
T251 300-303 DT denotes the
T252 340-345 NN denotes mouse
T253 304-311 JJ denotes retinal
T254 312-324 NN denotes degeneration
T255 325-326 CD denotes 7
T256 327-328 -LRB- denotes (
T257 328-331 NN denotes rd7
T258 331-332 -RRB- denotes )
T259 333-339 NN denotes mutant
T260 345-347 , denotes ,
T261 347-348 DT denotes a
T262 349-354 NN denotes model
T263 355-358 IN denotes for
T264 359-362 DT denotes the
T265 385-393 NN denotes syndrome
T266 363-368 JJ denotes human
T267 369-377 VBN denotes enhanced
T268 378-379 NN denotes S
T269 380-384 NN denotes cone
T270 379-380 HYPH denotes -
T271 394-395 -LRB- denotes (
T272 395-399 NN denotes ESCS
T273 399-400 -RRB- denotes )
T274 400-401 . denotes .
T275 401-541 sentence denotes This mutant carries a spontaneous deletion in the mouse ortholog of NR2E3, an orphan nuclear receptor transcription factor mutated in ESCS.
T276 402-406 DT denotes This
T277 407-413 NN denotes mutant
T278 414-421 VBZ denotes carries
T279 422-423 DT denotes a
T280 436-444 NN denotes deletion
T281 424-435 JJ denotes spontaneous
T282 445-447 IN denotes in
T283 448-451 DT denotes the
T284 458-466 NN denotes ortholog
T285 452-457 NN denotes mouse
T286 467-469 IN denotes of
T287 470-475 NN denotes NR2E3
T288 475-477 , denotes ,
T289 477-479 DT denotes an
T290 518-524 NN denotes factor
T291 480-486 NN denotes orphan
T292 487-494 JJ denotes nuclear
T293 495-503 NN denotes receptor
T294 504-517 NN denotes transcription
T295 525-532 VBN denotes mutated
T296 533-535 IN denotes in
T297 536-540 NN denotes ESCS
T298 540-541 . denotes .
T299 541-746 sentence denotes Employing microarray and in situ hybridization analysis we have found that the rd7 retina contains a modestly increased number of S-opsin–expressing cells that ultrastructurally appear to be normal cones.
T300 542-551 VBG denotes Employing
T301 606-611 VBN denotes found
T302 552-562 NN denotes microarray
T303 563-566 CC denotes and
T304 567-569 FW denotes in
T305 570-574 FW denotes situ
T306 589-597 NN denotes analysis
T307 575-588 NN denotes hybridization
T308 598-600 PRP denotes we
T309 601-605 VBP denotes have
T310 612-616 IN denotes that
T311 632-640 VBZ denotes contains
T312 617-620 DT denotes the
T313 625-631 NN denotes retina
T314 621-624 NN denotes rd7
T315 641-642 DT denotes a
T316 662-668 NN denotes number
T317 643-651 RB denotes modestly
T318 652-661 VBN denotes increased
T319 669-671 IN denotes of
T320 672-673 NN denotes S
T321 674-679 NN denotes opsin
T322 673-674 HYPH denotes -
T323 680-690 VBG denotes expressing
T324 679-680 HYPH denotes –
T325 691-696 NNS denotes cells
T326 697-701 WDT denotes that
T327 720-726 VBP denotes appear
T328 702-719 RB denotes ultrastructurally
T329 727-729 TO denotes to
T330 730-732 VB denotes be
T331 733-739 JJ denotes normal
T332 740-745 NNS denotes cones
T333 745-746 . denotes .
T334 746-906 sentence denotes Strikingly, the majority of the photoreceptors in the rd7 retina represent a morphologically hybrid cell type that expresses both rod- and cone-specific genes.
T335 747-757 RB denotes Strikingly
T336 812-821 VBP denotes represent
T337 757-759 , denotes ,
T338 759-762 DT denotes the
T339 763-771 NN denotes majority
T340 772-774 IN denotes of
T341 775-778 DT denotes the
T342 779-793 NNS denotes photoreceptors
T343 794-796 IN denotes in
T344 797-800 DT denotes the
T345 805-811 NN denotes retina
T346 801-804 NN denotes rd7
T347 822-823 DT denotes a
T348 852-856 NN denotes type
T349 824-839 RB denotes morphologically
T350 840-846 JJ denotes hybrid
T351 847-851 NN denotes cell
T352 857-861 WDT denotes that
T353 862-871 VBZ denotes expresses
T354 872-876 CC denotes both
T355 877-880 NN denotes rod
T356 891-899 JJ denotes specific
T357 880-881 HYPH denotes -
T358 882-885 CC denotes and
T359 886-890 NN denotes cone
T360 890-891 HYPH denotes -
T361 900-905 NNS denotes genes
T362 905-906 . denotes .
T363 906-1198 sentence denotes In addition, in situ hybridization screening of genes shown to be up-regulated in the rd7 mutant retina by microarray identified ten new cone-specific or cone-enriched genes with a wide range of biochemical functions, including two genes specifically involved in glucose/glycogen metabolism.
T364 907-909 IN denotes In
T365 1025-1035 VBD denotes identified
T366 910-918 NN denotes addition
T367 918-920 , denotes ,
T368 920-922 FW denotes in
T369 923-927 FW denotes situ
T370 942-951 NN denotes screening
T371 928-941 NN denotes hybridization
T372 952-954 IN denotes of
T373 955-960 NNS denotes genes
T374 961-966 VBN denotes shown
T375 967-969 TO denotes to
T376 976-985 VBN denotes regulated
T377 970-972 VB denotes be
T378 973-975 RB denotes up
T379 975-976 HYPH denotes -
T380 986-988 IN denotes in
T381 989-992 DT denotes the
T382 1004-1010 NN denotes retina
T383 993-996 NN denotes rd7
T384 997-1003 NN denotes mutant
T385 1011-1013 IN denotes by
T386 1014-1024 NN denotes microarray
T387 1036-1039 CD denotes ten
T388 1075-1080 NNS denotes genes
T389 1040-1043 JJ denotes new
T390 1044-1048 NN denotes cone
T391 1049-1057 JJ denotes specific
T392 1048-1049 HYPH denotes -
T393 1058-1060 CC denotes or
T394 1061-1065 NN denotes cone
T395 1066-1074 VBN denotes enriched
T396 1065-1066 HYPH denotes -
T397 1081-1085 IN denotes with
T398 1086-1087 DT denotes a
T399 1093-1098 NN denotes range
T400 1088-1092 JJ denotes wide
T401 1099-1101 IN denotes of
T402 1102-1113 JJ denotes biochemical
T403 1114-1123 NNS denotes functions
T404 1123-1125 , denotes ,
T405 1125-1134 VBG denotes including
T406 1135-1138 CD denotes two
T407 1139-1144 NNS denotes genes
T408 1145-1157 RB denotes specifically
T409 1158-1166 VBN denotes involved
T410 1167-1169 IN denotes in
T411 1170-1177 NN denotes glucose
T412 1178-1186 NN denotes glycogen
T413 1177-1178 HYPH denotes /
T414 1187-1197 NN denotes metabolism
T415 1197-1198 . denotes .
T416 1198-1458 sentence denotes We suggest that the abnormal electroretinograms, slow retinal degeneration, and retinal dysmorphology seen in humans with ESCS may, in part, be attributable to the aberrant function of a hybrid photoreceptor cell type similar to that identified in this study.
T417 1199-1201 PRP denotes We
T418 1202-1209 VBP denotes suggest
T419 1210-1214 IN denotes that
T420 1340-1342 VB denotes be
T421 1215-1218 DT denotes the
T422 1228-1246 NNS denotes electroretinograms
T423 1219-1227 JJ denotes abnormal
T424 1246-1248 , denotes ,
T425 1248-1252 JJ denotes slow
T426 1261-1273 NN denotes degeneration
T427 1253-1260 JJ denotes retinal
T428 1273-1275 , denotes ,
T429 1275-1278 CC denotes and
T430 1279-1286 JJ denotes retinal
T431 1287-1300 NN denotes dysmorphology
T432 1301-1305 VBN denotes seen
T433 1306-1308 IN denotes in
T434 1309-1315 NNS denotes humans
T435 1316-1320 IN denotes with
T436 1321-1325 NN denotes ESCS
T437 1326-1329 MD denotes may
T438 1329-1331 , denotes ,
T439 1331-1333 IN denotes in
T440 1334-1338 JJ denotes part
T441 1338-1340 , denotes ,
T442 1343-1355 JJ denotes attributable
T443 1356-1358 IN denotes to
T444 1359-1362 DT denotes the
T445 1372-1380 NN denotes function
T446 1363-1371 JJ denotes aberrant
T447 1381-1383 IN denotes of
T448 1384-1385 DT denotes a
T449 1412-1416 NN denotes type
T450 1386-1392 NN denotes hybrid
T451 1393-1406 NN denotes photoreceptor
T452 1407-1411 NN denotes cell
T453 1417-1424 JJ denotes similar
T454 1425-1427 IN denotes to
T455 1428-1432 DT denotes that
T456 1433-1443 VBN denotes identified
T457 1444-1446 IN denotes in
T458 1447-1451 DT denotes this
T459 1452-1457 NN denotes study
T460 1457-1458 . denotes .
T461 1458-1637 sentence denotes The functional diversity of the novel cone-specific genes identified here indicates molecular differences between rods and cones extending far beyond those previously discovered.
T462 1459-1462 DT denotes The
T463 1474-1483 NN denotes diversity
T464 1463-1473 JJ denotes functional
T465 1533-1542 VBZ denotes indicates
T466 1484-1486 IN denotes of
T467 1487-1490 DT denotes the
T468 1511-1516 NNS denotes genes
T469 1491-1496 JJ denotes novel
T470 1497-1501 NN denotes cone
T471 1502-1510 JJ denotes specific
T472 1501-1502 HYPH denotes -
T473 1517-1527 VBN denotes identified
T474 1528-1532 RB denotes here
T475 1543-1552 JJ denotes molecular
T476 1553-1564 NNS denotes differences
T477 1565-1572 IN denotes between
T478 1573-1577 NNS denotes rods
T479 1578-1581 CC denotes and
T480 1582-1587 NNS denotes cones
T481 1588-1597 VBG denotes extending
T482 1598-1601 RB denotes far
T483 1602-1608 IN denotes beyond
T484 1609-1614 DT denotes those
T485 1615-1625 RB denotes previously
T486 1626-1636 VBN denotes discovered
T487 1636-1637 . denotes .
T6068 759-762 DT denotes the
T6069 763-771 NN denotes majority
T6070 812-821 VBP denotes represent
T6071 772-774 IN denotes of
T6072 775-778 DT denotes the
T6073 779-793 NNS denotes photoreceptors
T6074 794-796 IN denotes in
T6075 797-800 DT denotes the
T6076 805-811 NN denotes retina
T6077 801-804 NN denotes rd7
T6078 822-823 DT denotes a
T6079 852-856 NN denotes type
T6080 824-839 RB denotes morphologically
T6081 840-846 JJ denotes hybrid
T6082 847-851 NN denotes cell
R29 T209 T207 pobj conditions,under
R46 T228 T226 pobj patterns,from
R123 T311 T301 ccomp contains,found
R158 T348 T336 dobj type,represent
R184 T376 T374 xcomp regulated,shown
R255 T449 T447 pobj type,of
R22 T201 T202 nmod Rod,photoreceptors
R23 T202 T205 nsubj photoreceptors,subserve
R24 T203 T201 cc and,Rod
R25 T204 T201 conj cone,Rod
R26 T206 T205 dobj vision,subserve
R27 T207 T205 prep under,subserve
R28 T208 T209 amod dim,conditions
R30 T210 T208 cc and,dim
R31 T211 T208 conj bright,dim
R32 T212 T209 compound light,conditions
R33 T213 T205 punct ", ",subserve
R34 T214 T205 advmod respectively,subserve
R35 T215 T205 punct .,subserve
R36 T217 T218 det The,differences
R37 T218 T219 nsubjpass differences,thought
R38 T220 T218 prep in,differences
R39 T221 T222 poss their,function
R40 T222 T220 pobj function,in
R41 T223 T219 auxpass are,thought
R42 T224 T225 aux to,stem
R43 T225 T219 xcomp stem,thought
R44 T226 T225 prep from,stem
R45 T227 T228 poss their,patterns
R47 T229 T228 amod different,patterns
R48 T230 T231 compound gene,expression
R49 T231 T228 compound expression,patterns
R50 T232 T228 punct ", ",patterns
R51 T233 T228 conj morphologies,patterns
R52 T234 T233 punct ", ",morphologies
R53 T235 T233 cc and,morphologies
R54 T236 T237 amod synaptic,connectivities
R55 T237 T233 conj connectivities,morphologies
R56 T238 T219 punct .,thought
R57 T240 T241 prep In,examined
R58 T242 T243 det this,study
R59 T243 T240 pobj study,In
R60 T244 T241 punct ", ",examined
R61 T245 T241 nsubj we,examined
R62 T246 T241 aux have,examined
R63 T247 T248 det the,cells
R64 T248 T241 dobj cells,examined
R65 T249 T248 compound photoreceptor,cells
R66 T250 T248 prep of,cells
R67 T251 T252 det the,mouse
R68 T252 T250 pobj mouse,of
R69 T253 T254 amod retinal,degeneration
R70 T254 T252 nmod degeneration,mouse
R71 T255 T254 nummod 7,degeneration
R72 T256 T254 punct (,degeneration
R73 T257 T254 appos rd7,degeneration
R74 T258 T252 punct ),mouse
R75 T259 T252 compound mutant,mouse
R76 T260 T252 punct ", ",mouse
R77 T261 T262 det a,model
R78 T262 T252 appos model,mouse
R79 T263 T262 prep for,model
R80 T264 T265 det the,syndrome
R81 T265 T263 pobj syndrome,for
R82 T266 T265 amod human,syndrome
R83 T267 T265 amod enhanced,syndrome
R84 T268 T269 compound S,cone
R85 T269 T265 compound cone,syndrome
R86 T270 T269 punct -,cone
R87 T271 T265 punct (,syndrome
R88 T272 T265 appos ESCS,syndrome
R89 T273 T241 punct ),examined
R90 T274 T241 punct .,examined
R91 T276 T277 det This,mutant
R92 T277 T278 nsubj mutant,carries
R93 T279 T280 det a,deletion
R94 T280 T278 dobj deletion,carries
R95 T281 T280 amod spontaneous,deletion
R96 T282 T280 prep in,deletion
R97 T283 T284 det the,ortholog
R98 T284 T282 pobj ortholog,in
R99 T285 T284 compound mouse,ortholog
R100 T286 T284 prep of,ortholog
R101 T287 T286 pobj NR2E3,of
R102 T288 T287 punct ", ",NR2E3
R103 T289 T290 det an,factor
R104 T290 T287 appos factor,NR2E3
R105 T291 T290 nmod orphan,factor
R106 T292 T293 amod nuclear,receptor
R107 T293 T290 compound receptor,factor
R108 T294 T290 compound transcription,factor
R109 T295 T290 acl mutated,factor
R110 T296 T295 prep in,mutated
R111 T297 T296 pobj ESCS,in
R112 T298 T278 punct .,carries
R113 T300 T301 advcl Employing,found
R114 T302 T300 dobj microarray,Employing
R115 T303 T302 cc and,microarray
R116 T304 T305 advmod in,situ
R117 T305 T306 amod situ,analysis
R118 T306 T302 conj analysis,microarray
R119 T307 T306 compound hybridization,analysis
R120 T308 T301 nsubj we,found
R121 T309 T301 aux have,found
R122 T310 T311 mark that,contains
R124 T312 T313 det the,retina
R125 T313 T311 nsubj retina,contains
R126 T314 T313 compound rd7,retina
R127 T315 T316 det a,number
R128 T316 T311 dobj number,contains
R129 T317 T318 advmod modestly,increased
R130 T318 T316 amod increased,number
R131 T319 T316 prep of,number
R132 T320 T321 compound S,opsin
R133 T321 T323 npadvmod opsin,expressing
R134 T322 T321 punct -,opsin
R135 T323 T325 amod expressing,cells
R136 T324 T323 punct –,expressing
R137 T325 T319 pobj cells,of
R138 T326 T327 dep that,appear
R139 T327 T325 relcl appear,cells
R140 T328 T327 advmod ultrastructurally,appear
R141 T329 T330 aux to,be
R142 T330 T327 xcomp be,appear
R143 T331 T332 amod normal,cones
R144 T332 T330 attr cones,be
R145 T333 T301 punct .,found
R146 T335 T336 advmod Strikingly,represent
R147 T337 T336 punct ", ",represent
R148 T338 T339 det the,majority
R149 T339 T336 nsubj majority,represent
R150 T340 T339 prep of,majority
R151 T341 T342 det the,photoreceptors
R152 T342 T340 pobj photoreceptors,of
R153 T343 T342 prep in,photoreceptors
R154 T344 T345 det the,retina
R155 T345 T343 pobj retina,in
R156 T346 T345 compound rd7,retina
R157 T347 T348 det a,type
R159 T349 T350 advmod morphologically,hybrid
R160 T350 T348 amod hybrid,type
R161 T351 T348 compound cell,type
R162 T352 T353 dep that,expresses
R163 T353 T348 relcl expresses,type
R164 T354 T355 preconj both,rod
R165 T355 T356 npadvmod rod,specific
R166 T356 T361 amod specific,genes
R167 T357 T355 punct -,rod
R168 T358 T355 cc and,rod
R169 T359 T355 conj cone,rod
R170 T360 T356 punct -,specific
R171 T361 T353 dobj genes,expresses
R172 T362 T336 punct .,represent
R173 T364 T365 prep In,identified
R174 T366 T364 pobj addition,In
R175 T367 T365 punct ", ",identified
R176 T368 T369 advmod in,situ
R177 T369 T370 amod situ,screening
R178 T370 T365 nsubj screening,identified
R179 T371 T370 compound hybridization,screening
R180 T372 T370 prep of,screening
R181 T373 T372 pobj genes,of
R182 T374 T373 acl shown,genes
R183 T375 T376 aux to,regulated
R185 T377 T376 auxpass be,regulated
R186 T378 T376 advmod up,regulated
R187 T379 T376 punct -,regulated
R188 T380 T376 prep in,regulated
R189 T381 T382 det the,retina
R190 T382 T380 pobj retina,in
R191 T383 T382 compound rd7,retina
R192 T384 T382 compound mutant,retina
R193 T385 T374 prep by,shown
R194 T386 T385 pobj microarray,by
R195 T387 T388 nummod ten,genes
R196 T388 T365 dobj genes,identified
R197 T389 T388 amod new,genes
R198 T390 T391 npadvmod cone,specific
R199 T391 T388 amod specific,genes
R200 T392 T391 punct -,specific
R201 T393 T391 cc or,specific
R202 T394 T395 npadvmod cone,enriched
R203 T395 T391 conj enriched,specific
R204 T396 T395 punct -,enriched
R205 T397 T388 prep with,genes
R206 T398 T399 det a,range
R207 T399 T397 pobj range,with
R208 T400 T399 amod wide,range
R209 T401 T399 prep of,range
R210 T402 T403 amod biochemical,functions
R211 T403 T401 pobj functions,of
R212 T404 T388 punct ", ",genes
R213 T405 T388 prep including,genes
R214 T406 T407 nummod two,genes
R215 T407 T405 pobj genes,including
R216 T408 T409 advmod specifically,involved
R217 T409 T407 acl involved,genes
R218 T410 T409 prep in,involved
R219 T411 T412 compound glucose,glycogen
R220 T412 T414 compound glycogen,metabolism
R221 T413 T412 punct /,glycogen
R222 T414 T410 pobj metabolism,in
R223 T415 T365 punct .,identified
R224 T417 T418 nsubj We,suggest
R225 T419 T420 mark that,be
R226 T420 T418 ccomp be,suggest
R227 T421 T422 det the,electroretinograms
R228 T422 T420 nsubj electroretinograms,be
R229 T423 T422 amod abnormal,electroretinograms
R230 T424 T422 punct ", ",electroretinograms
R231 T425 T426 amod slow,degeneration
R232 T426 T422 conj degeneration,electroretinograms
R233 T427 T426 amod retinal,degeneration
R234 T428 T426 punct ", ",degeneration
R235 T429 T426 cc and,degeneration
R236 T430 T431 amod retinal,dysmorphology
R237 T431 T426 conj dysmorphology,degeneration
R238 T432 T422 acl seen,electroretinograms
R239 T433 T432 prep in,seen
R240 T434 T433 pobj humans,in
R241 T435 T434 prep with,humans
R242 T436 T435 pobj ESCS,with
R243 T437 T420 aux may,be
R244 T438 T420 punct ", ",be
R245 T439 T420 prep in,be
R246 T440 T439 amod part,in
R247 T441 T420 punct ", ",be
R248 T442 T420 acomp attributable,be
R249 T443 T442 prep to,attributable
R250 T444 T445 det the,function
R251 T445 T443 pobj function,to
R252 T446 T445 amod aberrant,function
R253 T447 T445 prep of,function
R254 T448 T449 det a,type
R256 T450 T449 compound hybrid,type
R257 T451 T449 compound photoreceptor,type
R258 T452 T449 compound cell,type
R259 T453 T449 amod similar,type
R260 T454 T453 prep to,similar
R261 T455 T454 pobj that,to
R262 T456 T455 acl identified,that
R263 T457 T456 prep in,identified
R264 T458 T459 det this,study
R265 T459 T457 pobj study,in
R266 T460 T418 punct .,suggest
R267 T462 T463 det The,diversity
R268 T463 T465 nsubj diversity,indicates
R269 T464 T463 amod functional,diversity
R270 T466 T463 prep of,diversity
R271 T467 T468 det the,genes
R272 T468 T466 pobj genes,of
R273 T469 T468 amod novel,genes
R274 T470 T471 npadvmod cone,specific
R275 T471 T468 amod specific,genes
R276 T472 T471 punct -,specific
R277 T473 T468 acl identified,genes
R278 T474 T473 advmod here,identified
R279 T475 T476 amod molecular,differences
R280 T476 T465 dobj differences,indicates
R281 T477 T476 prep between,differences
R282 T478 T477 pobj rods,between
R283 T479 T478 cc and,rods
R284 T480 T478 conj cones,rods
R285 T481 T476 acl extending,differences
R286 T482 T483 advmod far,beyond
R287 T483 T481 prep beyond,extending
R288 T484 T483 pobj those,beyond
R289 T485 T486 advmod previously,discovered
R290 T486 T484 acl discovered,those
R291 T487 T465 punct .,indicates
R3739 T6068 T6069 det the,majority
R3740 T6069 T6070 nsubj majority,represent
R3741 T6071 T6069 prep of,majority
R3742 T6072 T6073 det the,photoreceptors
R3743 T6073 T6071 pobj photoreceptors,of
R3744 T6074 T6073 prep in,photoreceptors
R3745 T6075 T6076 det the,retina
R3746 T6076 T6074 pobj retina,in
R3747 T6077 T6076 compound rd7,retina
R3748 T6078 T6079 det a,type
R3749 T6079 T6070 dobj type,represent
R3750 T6080 T6081 advmod morphologically,hybrid
R3751 T6081 T6079 amod hybrid,type
R3752 T6082 T6079 compound cell,type

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T116 0-3 _FRAGMENT denotes Rod
T117 13-27 CL:0000604 denotes photoreceptors
T118 8-27 CL:0000573 denotes cone photoreceptors
T119 37-43 GO:0007601 denotes vision
T120 172-176 SO_EXT:0000704 denotes gene
T121 172-187 GO:0010467 denotes gene expression
T122 216-224 GO:0045202 denotes synaptic
T123 277-296 CL:0000210 denotes photoreceptor cells
T124 291-296 CL_GO_EXT:cell denotes cells
T125 304-311 UBERON:0000966 denotes retinal
T126 333-339 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T127 340-345 NCBITaxon:10088 denotes mouse
T128 363-368 NCBITaxon:9606 denotes human
T129 380-384 CL:0000573 denotes cone
T130 407-413 SO_EXT:sequence_altered_entity denotes mutant
T131 436-444 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T132 452-457 NCBITaxon:10088 denotes mouse
T133 458-466 SO_EXT:0000855 denotes ortholog
T134 470-475 PR_EXT:000011403 denotes NR2E3
T135 480-486 SO:0000910 denotes orphan
T136 487-494 GO:0005634 denotes nuclear
T137 495-503 GO_EXT:0004872 denotes receptor
T138 504-517 GO_EXT:transcription denotes transcription
T139 504-524 GO_EXT:transcription_factor denotes transcription factor
T140 525-532 SO_EXT:sequence_alteration_process denotes mutated
T141 575-588 GO:0097617 denotes hybridization
T142 625-631 UBERON:0000966 denotes retina
T143 672-679 PR_EXT:000001195 denotes S-opsin
T144 680-690 GO:0010467 denotes expressing
T145 691-696 CL_GO_EXT:cell denotes cells
T146 740-745 CL:0000573 denotes cones
T147 779-793 CL:0000287 denotes photoreceptors
T148 805-811 UBERON:0000966 denotes retina
T149 847-851 CL_GO_EXT:cell denotes cell
T150 862-871 GO:0010467 denotes expresses
T151 877-880 CL:0000604 denotes rod
T152 886-890 CL:0000573 denotes cone
T153 900-905 SO_EXT:0000704 denotes genes
T154 928-941 GO:0097617 denotes hybridization
T155 955-960 SO_EXT:0000704 denotes genes
T156 973-985 GO_EXT:positive_regulation denotes up-regulated
T157 997-1003 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T158 1004-1010 UBERON:0000966 denotes retina
T159 1044-1048 CL:0000573 denotes cone
T160 1061-1065 CL:0000573 denotes cone
T161 1075-1080 SO_EXT:0000704 denotes genes
T162 1102-1113 CHEBI_EXT:biochemical denotes biochemical
T163 1139-1144 SO_EXT:0000704 denotes genes
T164 1170-1177 CHEBI:17234 denotes glucose
T165 1170-1177 _FRAGMENT denotes glucose
T166 1187-1197 GO:0006006 denotes metabolism
T167 1178-1186 CHEBI:24384 denotes glycogen
T168 1178-1197 GO:0005977 denotes glycogen metabolism
T169 1253-1260 UBERON:0000966 denotes retinal
T170 1279-1286 UBERON:0000966 denotes retinal
T171 1309-1315 NCBITaxon:9606 denotes humans
T172 1393-1411 CL:0000210 denotes photoreceptor cell
T173 1407-1411 CL_GO_EXT:cell denotes cell
T174 1497-1501 CL:0000573 denotes cone
T175 1511-1516 SO_EXT:0000704 denotes genes
T176 1543-1552 CHEBI_EXT:polyatomic_entity_or_group denotes molecular
T177 1573-1577 CL:0000604 denotes rods
T178 1582-1587 CL:0000573 denotes cones
T5938 779-793 CL:0000210 denotes photoreceptors
T5939 805-811 UBERON:0000966 denotes retina
T5940 847-851 CL_GO_EXT:cell denotes cell
R3 T117 T116 _lexicallyChainedTo photoreceptors,Rod
R4 T166 T165 _lexicallyChainedTo metabolism,glucose

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T61 0-3 _FRAGMENT denotes Rod
T62 13-27 CL:0000604 denotes photoreceptors
T63 8-27 CL:0000573 denotes cone photoreceptors
T64 37-43 GO:0007601 denotes vision
T65 172-176 SO:0000704 denotes gene
T66 172-187 GO:0010467 denotes gene expression
T67 216-224 GO:0045202 denotes synaptic
T68 277-296 CL:0000210 denotes photoreceptor cells
T69 304-311 UBERON:0000966 denotes retinal
T70 340-345 NCBITaxon:10088 denotes mouse
T71 363-368 NCBITaxon:9606 denotes human
T72 380-384 CL:0000573 denotes cone
T73 452-457 NCBITaxon:10088 denotes mouse
T74 458-466 SO:0000855 denotes ortholog
T75 470-475 PR:000011403 denotes NR2E3
T76 480-486 SO:0000910 denotes orphan
T77 487-494 GO:0005634 denotes nuclear
T78 575-588 GO:0097617 denotes hybridization
T79 625-631 UBERON:0000966 denotes retina
T80 672-679 PR:000001195 denotes S-opsin
T81 680-690 GO:0010467 denotes expressing
T82 740-745 CL:0000573 denotes cones
T83 779-793 CL:0000287 denotes photoreceptors
T84 805-811 UBERON:0000966 denotes retina
T85 862-871 GO:0010467 denotes expresses
T86 877-880 CL:0000604 denotes rod
T87 886-890 CL:0000573 denotes cone
T88 900-905 SO:0000704 denotes genes
T89 928-941 GO:0097617 denotes hybridization
T90 955-960 SO:0000704 denotes genes
T91 1004-1010 UBERON:0000966 denotes retina
T92 1044-1048 CL:0000573 denotes cone
T93 1061-1065 CL:0000573 denotes cone
T94 1075-1080 SO:0000704 denotes genes
T95 1139-1144 SO:0000704 denotes genes
T96 1170-1177 CHEBI:17234 denotes glucose
T97 1170-1177 _FRAGMENT denotes glucose
T98 1187-1197 GO:0006006 denotes metabolism
T99 1178-1186 CHEBI:24384 denotes glycogen
T100 1178-1197 GO:0005977 denotes glycogen metabolism
T101 1253-1260 UBERON:0000966 denotes retinal
T102 1279-1286 UBERON:0000966 denotes retinal
T103 1309-1315 NCBITaxon:9606 denotes humans
T104 1393-1411 CL:0000210 denotes photoreceptor cell
T105 1497-1501 CL:0000573 denotes cone
T106 1511-1516 SO:0000704 denotes genes
T107 1573-1577 CL:0000604 denotes rods
T108 1582-1587 CL:0000573 denotes cones
T5848 779-793 CL:0000210 denotes photoreceptors
T5849 805-811 UBERON:0000966 denotes retina
R1 T62 T61 _lexicallyChainedTo photoreceptors,Rod
R2 T98 T97 _lexicallyChainedTo metabolism,glucose