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PMC:1186732 / 13608-14302 JSONTXT

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Id Subject Object Predicate Lexical cue
T2466 0-11 VBN denotes Dissociated
T2467 25-38 NN denotes hybridization
T2468 12-16 NN denotes cell
T2469 17-19 FW denotes in
T2470 20-24 FW denotes situ
T2471 43-52 VBN denotes performed
T2472 39-42 VBD denotes was
T2473 53-58 VBG denotes using
T2474 59-60 DT denotes a
T2475 61-66 NN denotes probe
T2476 67-70 IN denotes for
T2477 71-74 DT denotes the
T2478 88-92 NN denotes gene
T2479 75-76 NN denotes S
T2480 77-81 NN denotes cone
T2481 76-77 HYPH denotes -
T2482 82-87 NN denotes opsin
T2483 93-94 -LRB- denotes (
T2484 94-100 NN denotes Opn1sw
T2485 100-101 -RRB- denotes )
T2486 101-103 , denotes ,
T2487 103-108 WDT denotes which
T2488 109-114 VBZ denotes shows
T2489 115-119 NN denotes type
T2490 123-135 NN denotes derepression
T2491 120-122 CD denotes II
T2492 136-137 -LRB- denotes (
T2493 145-146 CD denotes 2
T2494 137-144 NNS denotes Figures
T2495 147-150 CC denotes and
T2496 151-153 NN denotes 3A
T2497 153-154 SYM denotes –
T2498 154-156 NN denotes 3C
T2499 156-157 -RRB- denotes )
T2500 157-158 . denotes .
T2501 158-314 sentence denotes S-opsin was expressed in 3.2% of retinal cells in the rd7 mutant (66 S-opsin–positive cells out of 2,056 6-diamidino-2-phenylindole [DAPI]-positive cells).
T2502 159-160 NN denotes S
T2503 161-166 NN denotes opsin
T2504 160-161 HYPH denotes -
T2505 171-180 VBN denotes expressed
T2506 167-170 VBD denotes was
T2507 181-183 IN denotes in
T2508 184-187 CD denotes 3.2
T2509 187-188 NN denotes %
T2510 189-191 IN denotes of
T2511 192-199 JJ denotes retinal
T2512 200-205 NNS denotes cells
T2513 206-208 IN denotes in
T2514 209-212 DT denotes the
T2515 217-223 NN denotes mutant
T2516 213-216 NN denotes rd7
T2517 224-225 -LRB- denotes (
T2518 245-250 NNS denotes cells
T2519 225-227 CD denotes 66
T2520 228-229 NN denotes S
T2521 236-244 JJ denotes positive
T2522 229-230 HYPH denotes -
T2523 230-235 JJ denotes opsin
T2524 235-236 HYPH denotes –
T2525 251-254 IN denotes out
T2526 255-257 IN denotes of
T2527 258-263 CD denotes 2,056
T2528 307-312 NNS denotes cells
T2529 264-265 CD denotes 6
T2530 266-275 NN denotes diamidino
T2531 265-266 HYPH denotes -
T2532 298-306 JJ denotes positive
T2533 275-276 HYPH denotes -
T2534 276-277 CD denotes 2
T2535 278-290 NN denotes phenylindole
T2536 277-278 HYPH denotes -
T2537 291-292 -LRB- denotes [
T2538 292-296 NN denotes DAPI
T2539 296-297 -RRB- denotes ]
T2540 297-298 HYPH denotes -
T2541 312-313 -RRB- denotes )
T2542 313-314 . denotes .
T2543 314-694 sentence denotes This value is approximately 2-fold greater than the percentage of S-opsin–positive cells identified in wild-type control retinas, 1.65% (54 S-opsin-positive cells out of 3,271 DAPI-positive cells), and accords well with the previously reported value of 2- to 3-fold more S-opsin–positive cells in rd7 compared to wild type arrived at by antibody staining of tissue sections [17].
T2544 315-319 DT denotes This
T2545 320-325 NN denotes value
T2546 326-328 VBZ denotes is
T2547 329-342 RB denotes approximately
T2548 343-349 RB denotes 2-fold
T2549 350-357 JJR denotes greater
T2550 358-362 IN denotes than
T2551 363-366 DT denotes the
T2552 367-377 NN denotes percentage
T2553 378-380 IN denotes of
T2554 381-382 NN denotes S
T2555 383-388 NN denotes opsin
T2556 382-383 HYPH denotes -
T2557 389-397 JJ denotes positive
T2558 388-389 HYPH denotes –
T2559 398-403 NNS denotes cells
T2560 404-414 VBN denotes identified
T2561 415-417 IN denotes in
T2562 418-422 JJ denotes wild
T2563 423-427 NN denotes type
T2564 422-423 HYPH denotes -
T2565 436-443 NNS denotes retinas
T2566 428-435 NN denotes control
T2567 443-445 , denotes ,
T2568 445-449 CD denotes 1.65
T2569 449-450 NN denotes %
T2570 451-452 -LRB- denotes (
T2571 472-477 NNS denotes cells
T2572 452-454 CD denotes 54
T2573 455-456 NN denotes S
T2574 457-462 NN denotes opsin
T2575 456-457 HYPH denotes -
T2576 463-471 JJ denotes positive
T2577 462-463 HYPH denotes -
T2578 478-481 IN denotes out
T2579 482-484 IN denotes of
T2580 485-490 CD denotes 3,271
T2581 505-510 NNS denotes cells
T2582 491-495 NN denotes DAPI
T2583 496-504 JJ denotes positive
T2584 495-496 HYPH denotes -
T2585 510-511 -RRB- denotes )
T2586 511-513 , denotes ,
T2587 513-516 CC denotes and
T2588 517-524 VBZ denotes accords
T2589 525-529 RB denotes well
T2590 530-534 IN denotes with
T2591 535-538 DT denotes the
T2592 559-564 NN denotes value
T2593 539-549 RB denotes previously
T2594 550-558 VBN denotes reported
T2595 565-567 IN denotes of
T2596 568-569 CD denotes 2
T2597 581-585 JJR denotes more
T2598 569-570 HYPH denotes -
T2599 571-573 IN denotes to
T2600 574-580 RB denotes 3-fold
T2601 603-608 NNS denotes cells
T2602 586-587 NN denotes S
T2603 588-593 NN denotes opsin
T2604 587-588 HYPH denotes -
T2605 594-602 JJ denotes positive
T2606 593-594 HYPH denotes –
T2607 609-611 IN denotes in
T2608 612-615 NN denotes rd7
T2609 616-624 VBN denotes compared
T2610 625-627 IN denotes to
T2611 628-632 JJ denotes wild
T2612 633-637 NN denotes type
T2613 638-645 VBN denotes arrived
T2614 646-648 IN denotes at
T2615 649-651 IN denotes by
T2616 652-660 NN denotes antibody
T2617 661-669 NN denotes staining
T2618 670-672 IN denotes of
T2619 673-679 NN denotes tissue
T2620 680-688 NNS denotes sections
T2621 689-690 -LRB- denotes [
T2622 690-692 CD denotes 17
T2623 692-693 -RRB- denotes ]
T2624 693-694 . denotes .
R1535 T2466 T2467 amod Dissociated,hybridization
R1536 T2467 T2471 nsubjpass hybridization,performed
R1537 T2468 T2467 nmod cell,hybridization
R1538 T2469 T2470 advmod in,situ
R1539 T2470 T2467 amod situ,hybridization
R1540 T2472 T2471 auxpass was,performed
R1541 T2473 T2471 advcl using,performed
R1542 T2474 T2475 det a,probe
R1543 T2475 T2473 dobj probe,using
R1544 T2476 T2473 prep for,using
R1545 T2477 T2478 det the,gene
R1546 T2478 T2476 pobj gene,for
R1547 T2479 T2480 compound S,cone
R1548 T2480 T2478 compound cone,gene
R1549 T2481 T2480 punct -,cone
R1550 T2482 T2478 compound opsin,gene
R1551 T2483 T2478 punct (,gene
R1552 T2484 T2478 appos Opn1sw,gene
R1553 T2485 T2478 punct ),gene
R1554 T2486 T2478 punct ", ",gene
R1555 T2487 T2488 dep which,shows
R1556 T2488 T2478 relcl shows,gene
R1557 T2489 T2490 nmod type,derepression
R1558 T2490 T2488 dobj derepression,shows
R1559 T2491 T2489 nummod II,type
R1560 T2492 T2493 punct (,2
R1561 T2493 T2471 parataxis 2,performed
R1562 T2494 T2493 nmod Figures,2
R1563 T2495 T2493 cc and,2
R1564 T2496 T2493 conj 3A,2
R1565 T2497 T2498 punct –,3C
R1566 T2498 T2496 prep 3C,3A
R1567 T2499 T2493 punct ),2
R1568 T2500 T2471 punct .,performed
R1569 T2502 T2503 compound S,opsin
R1570 T2503 T2505 nsubjpass opsin,expressed
R1571 T2504 T2503 punct -,opsin
R1572 T2506 T2505 auxpass was,expressed
R1573 T2507 T2505 prep in,expressed
R1574 T2508 T2509 nummod 3.2,%
R1575 T2509 T2507 pobj %,in
R1576 T2510 T2509 prep of,%
R1577 T2511 T2512 amod retinal,cells
R1578 T2512 T2510 pobj cells,of
R1579 T2513 T2505 prep in,expressed
R1580 T2514 T2515 det the,mutant
R1581 T2515 T2513 pobj mutant,in
R1582 T2516 T2515 compound rd7,mutant
R1583 T2517 T2518 punct (,cells
R1584 T2518 T2505 parataxis cells,expressed
R1585 T2519 T2518 nummod 66,cells
R1586 T2520 T2521 npadvmod S,positive
R1587 T2521 T2518 amod positive,cells
R1588 T2522 T2520 punct -,S
R1589 T2523 T2520 amod opsin,S
R1590 T2524 T2521 punct –,positive
R1591 T2525 T2518 prep out,cells
R1592 T2526 T2525 prep of,out
R1593 T2527 T2528 nummod "2,056",cells
R1594 T2528 T2526 pobj cells,of
R1595 T2529 T2530 nummod 6,diamidino
R1596 T2530 T2532 npadvmod diamidino,positive
R1597 T2531 T2530 punct -,diamidino
R1598 T2532 T2528 amod positive,cells
R1599 T2533 T2530 punct -,diamidino
R1600 T2534 T2535 nummod 2,phenylindole
R1601 T2535 T2530 appos phenylindole,diamidino
R1602 T2536 T2535 punct -,phenylindole
R1603 T2537 T2530 punct [,diamidino
R1604 T2538 T2530 appos DAPI,diamidino
R1605 T2539 T2532 punct ],positive
R1606 T2540 T2532 punct -,positive
R1607 T2541 T2518 punct ),cells
R1608 T2542 T2505 punct .,expressed
R1609 T2544 T2545 det This,value
R1610 T2545 T2546 nsubj value,is
R1611 T2547 T2548 advmod approximately,2-fold
R1612 T2548 T2549 advmod 2-fold,greater
R1613 T2549 T2546 acomp greater,is
R1614 T2550 T2549 prep than,greater
R1615 T2551 T2552 det the,percentage
R1616 T2552 T2550 pobj percentage,than
R1617 T2553 T2552 prep of,percentage
R1618 T2554 T2555 compound S,opsin
R1619 T2555 T2557 npadvmod opsin,positive
R1620 T2556 T2555 punct -,opsin
R1621 T2557 T2559 amod positive,cells
R1622 T2558 T2557 punct –,positive
R1623 T2559 T2553 pobj cells,of
R1624 T2560 T2559 acl identified,cells
R1625 T2561 T2560 prep in,identified
R1626 T2562 T2563 amod wild,type
R1627 T2563 T2565 compound type,retinas
R1628 T2564 T2563 punct -,type
R1629 T2565 T2561 pobj retinas,in
R1630 T2566 T2565 compound control,retinas
R1631 T2567 T2552 punct ", ",percentage
R1632 T2568 T2569 nummod 1.65,%
R1633 T2569 T2552 appos %,percentage
R1634 T2570 T2571 punct (,cells
R1635 T2571 T2552 parataxis cells,percentage
R1636 T2572 T2571 nummod 54,cells
R1637 T2573 T2574 compound S,opsin
R1638 T2574 T2576 npadvmod opsin,positive
R1639 T2575 T2574 punct -,opsin
R1640 T2576 T2571 amod positive,cells
R1641 T2577 T2576 punct -,positive
R1642 T2578 T2571 prep out,cells
R1643 T2579 T2578 prep of,out
R1644 T2580 T2581 nummod "3,271",cells
R1645 T2581 T2579 pobj cells,of
R1646 T2582 T2583 npadvmod DAPI,positive
R1647 T2583 T2581 amod positive,cells
R1648 T2584 T2583 punct -,positive
R1649 T2585 T2571 punct ),cells
R1650 T2586 T2546 punct ", ",is
R1651 T2587 T2546 cc and,is
R1652 T2588 T2546 conj accords,is
R1653 T2589 T2588 advmod well,accords
R1654 T2590 T2588 prep with,accords
R1655 T2591 T2592 det the,value
R1656 T2592 T2590 pobj value,with
R1657 T2593 T2594 advmod previously,reported
R1658 T2594 T2592 amod reported,value
R1659 T2595 T2592 prep of,value
R1660 T2596 T2597 npadvmod 2,more
R1661 T2597 T2601 amod more,cells
R1662 T2598 T2596 punct -,2
R1663 T2599 T2596 quantmod to,2
R1664 T2600 T2596 advmod 3-fold,2
R1665 T2601 T2595 pobj cells,of
R1666 T2602 T2603 compound S,opsin
R1667 T2603 T2605 npadvmod opsin,positive
R1668 T2604 T2603 punct -,opsin
R1669 T2605 T2601 amod positive,cells
R1670 T2606 T2605 punct –,positive
R1671 T2607 T2601 prep in,cells
R1672 T2608 T2607 pobj rd7,in
R1673 T2609 T2601 prep compared,cells
R1674 T2610 T2609 prep to,compared
R1675 T2611 T2612 amod wild,type
R1676 T2612 T2610 pobj type,to
R1677 T2613 T2601 acl arrived,cells
R1678 T2614 T2613 prep at,arrived
R1679 T2615 T2613 prep by,arrived
R1680 T2616 T2617 compound antibody,staining
R1681 T2617 T2615 pobj staining,by
R1682 T2618 T2617 prep of,staining
R1683 T2619 T2620 compound tissue,sections
R1684 T2620 T2618 pobj sections,of
R1685 T2621 T2622 punct [,17
R1686 T2622 T2588 parataxis 17,accords
R1687 T2623 T2622 punct ],17
R1688 T2624 T2546 punct .,is

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2067 12-16 CL_GO_EXT:cell denotes cell
T2068 25-38 GO:0097617 denotes hybridization
T2069 61-66 CHEBI_SO_EXT:molecular_probe denotes probe
T2070 75-87 PR_EXT:000001195 denotes S-cone opsin
T2071 77-81 CL:0000573 denotes cone
T2072 88-92 SO_EXT:0000704 denotes gene
T2073 94-100 PR_EXT:000001195 denotes Opn1sw
T2074 159-166 PR_EXT:000001195 denotes S-opsin
T2075 171-180 GO:0010467 denotes expressed
T2076 192-199 UBERON:0000966 denotes retinal
T2077 192-205 CL:0009004 denotes retinal cells
T2078 200-205 CL_GO_EXT:cell denotes cells
T2079 217-223 SO_EXT:sequence_altered_entity denotes mutant
T2080 228-235 PR_EXT:000001195 denotes S-opsin
T2081 245-250 CL_GO_EXT:cell denotes cells
T2082 264-290 CHEBI:51231 denotes 6-diamidino-2-phenylindole
T2083 292-296 CHEBI:51231 denotes DAPI
T2084 307-312 CL_GO_EXT:cell denotes cells
T2085 381-388 PR_EXT:000001195 denotes S-opsin
T2086 398-403 CL_GO_EXT:cell denotes cells
T2087 418-427 SO_EXT:wild_type_entity_or_quality denotes wild-type
T2088 436-443 UBERON:0000966 denotes retinas
T2089 455-462 PR_EXT:000001195 denotes S-opsin
T2090 472-477 CL_GO_EXT:cell denotes cells
T2091 491-495 CHEBI:51231 denotes DAPI
T2092 505-510 CL_GO_EXT:cell denotes cells
T2093 586-593 PR_EXT:000001195 denotes S-opsin
T2094 603-608 CL_GO_EXT:cell denotes cells
T2095 628-637 SO_EXT:wild_type_entity_or_quality denotes wild type
T2096 652-660 GO:0042571 denotes antibody
T2097 673-679 UBERON:0000479 denotes tissue

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1963 25-38 GO:0097617 denotes hybridization
T1964 75-87 PR:000001195 denotes S-cone opsin
T1965 77-81 CL:0000573 denotes cone
T1966 88-92 SO:0000704 denotes gene
T1967 94-100 PR:000001195 denotes Opn1sw
T1968 159-166 PR:000001195 denotes S-opsin
T1969 171-180 GO:0010467 denotes expressed
T1970 192-199 UBERON:0000966 denotes retinal
T1971 192-205 CL:0009004 denotes retinal cells
T1972 228-235 PR:000001195 denotes S-opsin
T1973 264-290 CHEBI:51231 denotes 6-diamidino-2-phenylindole
T1974 292-296 CHEBI:51231 denotes DAPI
T1975 381-388 PR:000001195 denotes S-opsin
T1976 436-443 UBERON:0000966 denotes retinas
T1977 455-462 PR:000001195 denotes S-opsin
T1978 491-495 CHEBI:51231 denotes DAPI
T1979 586-593 PR:000001195 denotes S-opsin
T1980 652-660 GO:0042571 denotes antibody
T1981 673-679 UBERON:0000479 denotes tissue

2_test

Id Subject Object Predicate Lexical cue
16110338-11487564-85798515 690-692 11487564 denotes 17
T57828 690-692 11487564 denotes 17