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PMC:1183529 / 668-927 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T916 28-34 GO:0008380 denotes splice
T917 73-83 SO:0000673 denotes transcript
T918 114-119 NCBITaxon:9606 denotes Human
T919 139-152 UBERON:0001103 denotes diaphragmatic
T920 164-173 UBERON:0002048 denotes pulmonary
T921 217-221 PR:000017653 denotes FOG2

Biotea

Id Subject Object Predicate Lexical cue
T615 139-152 http://purl.bioontology.org/ontology/SNOMEDCT/263734003 denotes diaphragmatic
T657 232-240 http://purl.bioontology.org/ontology/MESH/Q000032 denotes analysis
T659 232-240 http://purl.bioontology.org/ontology/SNOMEDCT/272389005 denotes analysis
T661 232-240 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25391 denotes analysis
T676 1-11 http://purl.bioontology.org/ontology/SNOMEDCT/7882003 denotes identified
T678 1-11 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25737 denotes identified
T681 14-22 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16885 denotes mutation
T685 14-22 http://purl.bioontology.org/ontology/MESH/D009154 denotes mutation
T686 204-213 http://purl.bioontology.org/ontology/MESH/D009154 denotes mutations
T690 14-22 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C45576 denotes mutation
T693 164-184 http://purl.bioontology.org/ontology/OMIM/MTHU004127 denotes pulmonary hypoplasia
T696 164-184 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C99035 denotes pulmonary hypoplasia
T699 164-184 http://purl.bioontology.org/ontology/MEDDRA/10037407 denotes pulmonary hypoplasia
T702 164-173 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C13304 denotes pulmonary
T707 164-173 http://purl.bioontology.org/ontology/SNOMEDCT/738985004 denotes pulmonary
T712 164-173 http://purl.bioontology.org/ontology/SNOMEDCT/264164005 denotes pulmonary
T717 174-184 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C120893 denotes hypoplasia
T720 174-184 http://purl.bioontology.org/ontology/SNOMEDCT/55199003 denotes hypoplasia
T723 64-72 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C78802 denotes abnormal
T725 64-72 http://purl.bioontology.org/ontology/SNOMEDCT/263654008 denotes abnormal
T727 64-72 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25401 denotes abnormal
T731 217-221 http://purl.obolibrary.org/obo/PR_000017653 denotes FOG2
T736 217-221 http://purl.obolibrary.org/obo/PR_Q8CCH7 denotes FOG2
T741 217-221 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C102765 denotes FOG2
T766 223-240 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17565 denotes Sequence analysis
T768 35-45 http://purl.bioontology.org/ontology/SNOMEDCT/410609009 denotes donor site
T769 35-45 http://purl.bioontology.org/ontology/SNOMEDCT/410608001 denotes donor site
T770 35-40 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25168 denotes donor
T771 35-40 http://purl.obolibrary.org/obo/OBI_1110087 denotes donor
T772 35-40 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C48284 denotes donor
T773 41-45 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C13717 denotes site
T774 41-45 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C37901 denotes site
T775 41-45 http://purl.bioontology.org/ontology/SNOMEDCT/10546003 denotes site
T776 41-45 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T777 41-45 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C80403 denotes site
T778 73-83 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C1936 denotes transcript
T779 84-92 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C80216 denotes encoding
T780 105-112 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C64858 denotes protein
T781 105-112 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17021 denotes protein
T782 105-112 http://purl.obolibrary.org/obo/GO_0003675 denotes protein
T783 105-112 http://purl.org/sig/ont/fma/fma67257 denotes protein
T784 105-112 http://purl.obolibrary.org/obo/CHEBI_36080 denotes protein
T785 105-112 http://purl.bioontology.org/ontology/NDFRT/N0000148318 denotes protein
T786 105-112 http://purl.obolibrary.org/obo/PR_000000001 denotes protein
T787 105-112 http://purl.obolibrary.org/obo/PR_000000001 denotes protein
T788 105-112 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C41172 denotes protein
T789 105-112 http://purl.bioontology.org/ontology/SNOMEDCT/88878007 denotes protein
T790 105-112 http://purl.bioontology.org/ontology/MEDDRA/10036987 denotes protein
T791 114-119 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C14225 denotes Human
T793 114-119 http://purl.bioontology.org/ontology/STY/T016 denotes Human
T795 114-119 http://purl.bioontology.org/ontology/STY/T016 denotes Human
T797 114-119 http://purl.bioontology.org/ontology/STY/T016 denotes Human
T799 114-119 http://purl.bioontology.org/ontology/STY/T016 denotes Human
T801 114-119 http://purl.bioontology.org/ontology/STY/T016 denotes Human
T803 114-119 http://purl.bioontology.org/ontology/STY/T016 denotes Human
T805 114-119 http://purl.bioontology.org/ontology/STY/T016 denotes Human
T807 114-119 http://purl.bioontology.org/ontology/STY/T016 denotes Human
T809 114-119 http://purl.bioontology.org/ontology/STY/T016 denotes Human
T811 114-119 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T813 114-119 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T815 120-127 http://purl.bioontology.org/ontology/MESH/D001344 denotes autopsy
T816 120-127 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25153 denotes autopsy
T817 120-127 http://purl.bioontology.org/ontology/SNOMEDCT/29240004 denotes autopsy
T818 120-127 http://purl.bioontology.org/ontology/MEDDRA/10050117 denotes autopsy
T819 128-133 http://purl.bioontology.org/ontology/SNOMEDCT/398241000 denotes cases
T820 139-159 http://purl.bioontology.org/ontology/OMIM/MTHU009127 denotes diaphragmatic defect
T821 153-159 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C43429 denotes defect
T822 153-159 http://purl.bioontology.org/ontology/SNOMEDCT/6920004 denotes defect
T823 190-199 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25214 denotes evaluated
T824 223-240 http://purl.bioontology.org/ontology/MESH/D017421 denotes Sequence analysis
T825 223-231 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C43465 denotes Sequence
T826 223-231 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C89252 denotes Sequence
T827 223-231 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C13299 denotes Sequence
T828 223-231 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25673 denotes Sequence
T829 223-231 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C45374 denotes Sequence
T830 223-231 http://purl.obolibrary.org/obo/SO_0000001 denotes Sequence
T831 241-249 http://purl.bioontology.org/ontology/SNOMEDCT/263857004 denotes revealed
T834 252-259 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C28354 denotes de novo

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T965 14-22 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T966 28-34 GO:0008380 denotes splice
T967 28-45 SO_EXT:splice_donor denotes splice donor site
T968 73-83 SO_EXT:0000673 denotes transcript
T969 84-92 SO_EXT:sequence_coding_function denotes encoding
T970 95-104 SO_EXT:sequence_truncation_process denotes truncated
T971 105-112 CHEBI_PR_EXT:protein denotes protein
T972 114-119 NCBITaxon:9606 denotes Human
T973 139-152 UBERON:0001103 denotes diaphragmatic
T974 164-173 UBERON:0002048 denotes pulmonary
T975 204-213 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T976 217-221 PR_EXT:000017653 denotes FOG2
T977 223-231 SO_EXT:biological_sequence denotes Sequence

craft-sa-dev

Id Subject Object Predicate Lexical cue
T1104 1-11 VBD denotes identified
T1107 12-13 DT denotes a
T1108 14-22 NN denotes mutation
T1109 23-25 IN denotes in
T1110 26-27 DT denotes a
T1111 41-45 NN denotes site
T1112 28-34 NN denotes splice
T1113 35-40 NN denotes donor
T1114 46-50 WDT denotes that
T1115 51-60 VBZ denotes generates
T1116 61-63 DT denotes an
T1117 73-83 NN denotes transcript
T1118 64-72 JJ denotes abnormal
T1119 84-92 VBG denotes encoding
T1120 93-94 DT denotes a
T1121 105-112 NN denotes protein
T1122 95-104 VBN denotes truncated
T1123 112-113 . denotes .
T1124 113-222 sentence denotes Human autopsy cases with diaphragmatic defect and pulmonary hypoplasia were evaluated for mutations in FOG2.
T1125 114-119 JJ denotes Human
T1126 128-133 NNS denotes cases
T1127 120-127 NN denotes autopsy
T1128 190-199 VBN denotes evaluated
T1129 134-138 IN denotes with
T1130 139-152 JJ denotes diaphragmatic
T1131 153-159 NN denotes defect
T1132 160-163 CC denotes and
T1133 164-173 JJ denotes pulmonary
T1134 174-184 NN denotes hypoplasia
T1135 185-189 VBD denotes were
T1136 200-203 IN denotes for
T1137 204-213 NNS denotes mutations
T1138 214-216 IN denotes in
T1139 217-221 NN denotes FOG2
T1140 221-222 . denotes .
T1142 223-231 NN denotes Sequence
T1143 232-240 NN denotes analysis
T1144 241-249 VBD denotes revealed
T1145 250-251 DT denotes a
T1147 252-254 FW denotes de
T1148 255-259 FW denotes novo
R104 T1111 T1109 pobj site,in
R105 T1112 T1111 compound splice,site
R106 T1113 T1111 compound donor,site
R110 T1117 T1115 dobj transcript,generates
R111 T1118 T1117 amod abnormal,transcript
R114 T1121 T1119 dobj protein,encoding
R115 T1122 T1121 amod truncated,protein
R118 T1126 T1128 nsubjpass cases,evaluated
R119 T1127 T1126 compound autopsy,cases
R136 T1147 T1148 advmod de,novo
R100 T1107 T1108 det a,mutation
R101 T1108 T1104 dobj mutation,identified
R102 T1109 T1104 prep in,identified
R103 T1110 T1111 det a,site
R107 T1114 T1115 dep that,generates
R108 T1115 T1111 relcl generates,site
R109 T1116 T1117 det an,transcript
R112 T1119 T1117 acl encoding,transcript
R113 T1120 T1121 det a,protein
R116 T1123 T1104 punct .,identified
R117 T1125 T1126 amod Human,cases
R120 T1129 T1126 prep with,cases
R121 T1130 T1131 amod diaphragmatic,defect
R122 T1131 T1129 pobj defect,with
R123 T1132 T1131 cc and,defect
R124 T1133 T1134 amod pulmonary,hypoplasia
R125 T1134 T1131 conj hypoplasia,defect
R126 T1135 T1128 auxpass were,evaluated
R127 T1136 T1128 prep for,evaluated
R128 T1137 T1136 pobj mutations,for
R129 T1138 T1137 prep in,mutations
R130 T1139 T1138 pobj FOG2,in
R131 T1140 T1128 punct .,evaluated
R132 T1142 T1143 compound Sequence,analysis
R133 T1143 T1144 nsubj analysis,revealed