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PMC:1183529 / 30611-31267 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T15959 36-41 NCBITaxon:10088 denotes mouse
T15960 89-97 UBERON:0000915 denotes thoracic
T15961 98-114 UBERON:0005291 denotes embryonic tissue
T15962 147-153 SO:0000112 denotes primer
T15963 181-185 PR:000017653 denotes Fog2
T15964 186-190 SO:0000704 denotes gene
T15965 230-237 SO:0000112 denotes primers
T15966 263-270 GO:0008380 denotes spliced
T15967 271-280 _FRAGMENT denotes region of
T15968 285-289 SO:0000842 denotes gene
T15969 398-409 SO:0000006 denotes PCR product
T15970 433-439 SO:0000440 denotes vector
T15971 536-540 SO:0000704 denotes gene
T15972 550-557 SO:0000112 denotes primers
T15973 608-612 SO:0000704 denotes Gene
R4579 T15968 T15967 _lexicallyChainedTo gene,region of

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T15974 0-2 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T15975 11-19 SO_EXT:biological_sequence denotes sequence
T15976 36-41 NCBITaxon:10088 denotes mouse
T15977 43-46 CHEBI_SO_EXT:RNA denotes RNA
T15978 89-97 UBERON:0000915 denotes thoracic
T15979 98-114 UBERON:0005291 denotes embryonic tissue
T15980 116-118 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T15981 147-153 SO_EXT:0000112 denotes primer
T15982 181-185 PR_EXT:000017653 denotes Fog2
T15983 186-190 SO_EXT:0000704 denotes gene
T15984 192-194 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T15985 217-229 CHEBI_EXT:radiolabel_process denotes radiolabeled
T15986 230-237 SO_EXT:0000112 denotes primers
T15987 263-270 GO:0008380 denotes spliced
T15988 271-280 _FRAGMENT denotes region of
T15989 285-289 SO_EXT:0000842 denotes gene
T15990 331-341 GO_EXT:macromolecule_denaturation denotes denaturing
T15991 395-397 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T15992 398-409 SO_EXT:0000006 denotes PCR product
T15993 414-420 SO_EXT:sequence_cloning_process denotes cloned
T15994 433-439 SO_EXT:0000440 denotes vector
T15995 454-461 SO_EXT:sequence_cloning_process denotes Cloning
T15996 536-540 SO_EXT:0000704 denotes gene
T15997 550-557 SO_EXT:0000112 denotes primers
T15998 559-567 SO_EXT:biological_sequence denotes Sequence
T15999 608-612 SO_EXT:0000704 denotes Gene
R4580 T15989 T15988 _lexicallyChainedTo gene,region of

craft-sa-dev

Id Subject Object Predicate Lexical cue
T16000 0-2 NN denotes RT
T16001 3-6 NN denotes PCR
T16002 2-3 HYPH denotes -
T16003 7-10 CC denotes and
T16004 11-19 NN denotes sequence
T16005 20-28 NN denotes analysis
T16006 29-31 IN denotes in
T16007 32-35 DT denotes the
T16008 36-41 NN denotes mouse
T16009 41-42 . denotes .
T16010 42-115 sentence denotes RNA was extracted by standard techniques from thoracic embryonic tissue.
T16011 43-46 NN denotes RNA
T16012 51-60 VBN denotes extracted
T16013 47-50 VBD denotes was
T16014 61-63 IN denotes by
T16015 64-72 JJ denotes standard
T16016 73-83 NNS denotes techniques
T16017 84-88 IN denotes from
T16018 89-97 JJ denotes thoracic
T16019 108-114 NN denotes tissue
T16020 98-107 JJ denotes embryonic
T16021 114-115 . denotes .
T16022 115-191 sentence denotes RT-PCR was performed using six primer sets designed to cover the Fog2 gene.
T16023 116-118 NN denotes RT
T16024 119-122 NN denotes PCR
T16025 118-119 HYPH denotes -
T16026 127-136 VBN denotes performed
T16027 123-126 VBD denotes was
T16028 137-142 VBG denotes using
T16029 143-146 CD denotes six
T16030 154-158 NNS denotes sets
T16031 147-153 NN denotes primer
T16032 159-167 VBN denotes designed
T16033 168-170 TO denotes to
T16034 171-176 VB denotes cover
T16035 177-180 DT denotes the
T16036 186-190 NN denotes gene
T16037 181-185 NN denotes Fog2
T16038 190-191 . denotes .
T16039 191-390 sentence denotes RT-PCR was repeated with radiolabeled primers to amplify an abnormally spliced region of the gene (Table S1), and the product was run on a denaturing sequencing gel according to standard techniques.
T16040 192-194 NN denotes RT
T16041 195-198 NN denotes PCR
T16042 194-195 HYPH denotes -
T16043 203-211 VBN denotes repeated
T16044 199-202 VBD denotes was
T16045 212-216 IN denotes with
T16046 217-229 VBN denotes radiolabeled
T16047 230-237 NNS denotes primers
T16048 238-240 TO denotes to
T16049 241-248 VB denotes amplify
T16050 249-251 DT denotes an
T16051 271-277 NN denotes region
T16052 252-262 RB denotes abnormally
T16053 263-270 VBN denotes spliced
T16054 278-280 IN denotes of
T16055 281-284 DT denotes the
T16056 285-289 NN denotes gene
T16057 290-291 -LRB- denotes (
T16058 297-299 NN denotes S1
T16059 291-296 NN denotes Table
T16060 299-300 -RRB- denotes )
T16061 300-302 , denotes ,
T16062 302-305 CC denotes and
T16063 306-309 DT denotes the
T16064 310-317 NN denotes product
T16065 322-325 VBN denotes run
T16066 318-321 VBD denotes was
T16067 326-328 IN denotes on
T16068 329-330 DT denotes a
T16069 353-356 NN denotes gel
T16070 331-341 VBG denotes denaturing
T16071 342-352 NN denotes sequencing
T16072 357-366 VBG denotes according
T16073 367-369 IN denotes to
T16074 370-378 JJ denotes standard
T16075 379-389 NNS denotes techniques
T16076 389-390 . denotes .
T16077 390-558 sentence denotes The RT-PCR product was cloned into pCR2.1 vector using TOPO TA Cloning Kit (Invitrogen, Carlsbad, California, United States) and sequenced using gene-specific primers.
T16078 391-394 DT denotes The
T16079 402-409 NN denotes product
T16080 395-397 NN denotes RT
T16081 398-401 NN denotes PCR
T16082 397-398 HYPH denotes -
T16083 414-420 VBN denotes cloned
T16084 410-413 VBD denotes was
T16085 421-425 IN denotes into
T16086 426-432 NN denotes pCR2.1
T16087 433-439 NN denotes vector
T16088 440-445 VBG denotes using
T16089 446-450 NN denotes TOPO
T16090 462-465 NNP denotes Kit
T16091 451-453 NN denotes TA
T16092 454-461 NNP denotes Cloning
T16093 466-467 -LRB- denotes (
T16094 467-477 NNP denotes Invitrogen
T16095 477-479 , denotes ,
T16096 479-487 NNP denotes Carlsbad
T16097 487-489 , denotes ,
T16098 489-499 NNP denotes California
T16099 499-501 , denotes ,
T16100 501-507 NNP denotes United
T16101 508-514 NNP denotes States
T16102 514-515 -RRB- denotes )
T16103 516-519 CC denotes and
T16104 520-529 VBN denotes sequenced
T16105 530-535 VBG denotes using
T16106 536-540 NN denotes gene
T16107 541-549 JJ denotes specific
T16108 540-541 HYPH denotes -
T16109 550-557 NNS denotes primers
T16110 557-558 . denotes .
T16111 558-656 sentence denotes Sequence analysis was done using Sequencher 4.1 (Gene Codes, Ann Arbor, Michigan, United States).
T16112 559-567 NN denotes Sequence
T16113 568-576 NN denotes analysis
T16114 581-585 VBN denotes done
T16115 577-580 VBD denotes was
T16116 586-591 VBG denotes using
T16117 592-602 NNP denotes Sequencher
T16118 603-606 CD denotes 4.1
T16119 607-608 -LRB- denotes (
T16120 613-618 NNPS denotes Codes
T16121 608-612 NNP denotes Gene
T16122 618-620 , denotes ,
T16123 620-623 NNP denotes Ann
T16124 624-629 NNP denotes Arbor
T16125 629-631 , denotes ,
T16126 631-639 NNP denotes Michigan
T16127 639-641 , denotes ,
T16128 641-647 NNP denotes United
T16129 648-654 NNP denotes States
T16130 654-655 -RRB- denotes )
T16131 655-656 . denotes .
R4581 T16000 T16001 compound RT,PCR
R4582 T16002 T16001 punct -,PCR
R4583 T16003 T16001 cc and,PCR
R4584 T16004 T16005 compound sequence,analysis
R4585 T16005 T16001 conj analysis,PCR
R4586 T16006 T16001 prep in,PCR
R4587 T16007 T16008 det the,mouse
R4588 T16008 T16006 pobj mouse,in
R4589 T16009 T16001 punct .,PCR
R4590 T16011 T16012 nsubjpass RNA,extracted
R4591 T16013 T16012 auxpass was,extracted
R4592 T16014 T16012 prep by,extracted
R4593 T16015 T16016 amod standard,techniques
R4594 T16016 T16014 pobj techniques,by
R4595 T16017 T16012 prep from,extracted
R4596 T16018 T16019 amod thoracic,tissue
R4597 T16019 T16017 pobj tissue,from
R4598 T16020 T16019 amod embryonic,tissue
R4599 T16021 T16012 punct .,extracted
R4600 T16023 T16024 compound RT,PCR
R4601 T16024 T16026 nsubjpass PCR,performed
R4602 T16025 T16024 punct -,PCR
R4603 T16027 T16026 auxpass was,performed
R4604 T16028 T16026 advcl using,performed
R4605 T16029 T16030 nummod six,sets
R4606 T16030 T16028 dobj sets,using
R4607 T16031 T16030 compound primer,sets
R4608 T16032 T16030 acl designed,sets
R4609 T16033 T16034 aux to,cover
R4610 T16034 T16032 advcl cover,designed
R4611 T16035 T16036 det the,gene
R4612 T16036 T16034 dobj gene,cover
R4613 T16037 T16036 compound Fog2,gene
R4614 T16038 T16026 punct .,performed
R4615 T16040 T16041 compound RT,PCR
R4616 T16041 T16043 nsubjpass PCR,repeated
R4617 T16042 T16041 punct -,PCR
R4618 T16044 T16043 auxpass was,repeated
R4619 T16045 T16043 prep with,repeated
R4620 T16046 T16047 amod radiolabeled,primers
R4621 T16047 T16045 pobj primers,with
R4622 T16048 T16049 aux to,amplify
R4623 T16049 T16043 advcl amplify,repeated
R4624 T16050 T16051 det an,region
R4625 T16051 T16049 dobj region,amplify
R4626 T16052 T16053 advmod abnormally,spliced
R4627 T16053 T16051 amod spliced,region
R4628 T16054 T16051 prep of,region
R4629 T16055 T16056 det the,gene
R4630 T16056 T16054 pobj gene,of
R4631 T16057 T16058 punct (,S1
R4632 T16058 T16043 parataxis S1,repeated
R4633 T16059 T16058 compound Table,S1
R4634 T16060 T16058 punct ),S1
R4635 T16061 T16043 punct ", ",repeated
R4636 T16062 T16043 cc and,repeated
R4637 T16063 T16064 det the,product
R4638 T16064 T16065 nsubjpass product,run
R4639 T16065 T16043 conj run,repeated
R4640 T16066 T16065 auxpass was,run
R4641 T16067 T16065 prep on,run
R4642 T16068 T16069 det a,gel
R4643 T16069 T16067 pobj gel,on
R4644 T16070 T16069 amod denaturing,gel
R4645 T16071 T16069 compound sequencing,gel
R4646 T16072 T16065 prep according,run
R4647 T16073 T16072 prep to,according
R4648 T16074 T16075 amod standard,techniques
R4649 T16075 T16073 pobj techniques,to
R4650 T16076 T16065 punct .,run
R4651 T16078 T16079 det The,product
R4652 T16079 T16083 nsubjpass product,cloned
R4653 T16080 T16081 compound RT,PCR
R4654 T16081 T16079 compound PCR,product
R4655 T16082 T16081 punct -,PCR
R4656 T16084 T16083 auxpass was,cloned
R4657 T16085 T16083 prep into,cloned
R4658 T16086 T16087 compound pCR2.1,vector
R4659 T16087 T16085 pobj vector,into
R4660 T16088 T16083 advcl using,cloned
R4661 T16089 T16090 compound TOPO,Kit
R4662 T16090 T16088 dobj Kit,using
R4663 T16091 T16090 compound TA,Kit
R4664 T16092 T16090 compound Cloning,Kit
R4665 T16093 T16094 punct (,Invitrogen
R4666 T16094 T16090 parataxis Invitrogen,Kit
R4667 T16095 T16094 punct ", ",Invitrogen
R4668 T16096 T16094 npadvmod Carlsbad,Invitrogen
R4669 T16097 T16094 punct ", ",Invitrogen
R4670 T16098 T16094 npadvmod California,Invitrogen
R4671 T16099 T16094 punct ", ",Invitrogen
R4672 T16100 T16101 compound United,States
R4673 T16101 T16094 npadvmod States,Invitrogen
R4674 T16102 T16094 punct ),Invitrogen
R4675 T16103 T16083 cc and,cloned
R4676 T16104 T16083 conj sequenced,cloned
R4677 T16105 T16104 advcl using,sequenced
R4678 T16106 T16107 npadvmod gene,specific
R4679 T16107 T16109 amod specific,primers
R4680 T16108 T16107 punct -,specific
R4681 T16109 T16105 dobj primers,using
R4682 T16110 T16083 punct .,cloned
R4683 T16112 T16113 compound Sequence,analysis
R4684 T16113 T16114 nsubjpass analysis,done
R4685 T16115 T16114 auxpass was,done
R4686 T16116 T16114 advcl using,done
R4687 T16117 T16116 dobj Sequencher,using
R4688 T16118 T16117 nummod 4.1,Sequencher
R4689 T16119 T16120 punct (,Codes
R4690 T16120 T16117 parataxis Codes,Sequencher
R4691 T16121 T16120 compound Gene,Codes
R4692 T16122 T16120 punct ", ",Codes
R4693 T16123 T16124 compound Ann,Arbor
R4694 T16124 T16120 npadvmod Arbor,Codes
R4695 T16125 T16120 punct ", ",Codes
R4696 T16126 T16120 npadvmod Michigan,Codes
R4697 T16127 T16120 punct ", ",Codes
R4698 T16128 T16129 compound United,States
R4699 T16129 T16120 npadvmod States,Codes
R4700 T16130 T16120 punct ),Codes
R4701 T16131 T16114 punct .,done