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PMC:1166548 / 9765-10489 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T6751 10-16 NN denotes Effect
T6752 17-19 IN denotes of
T6753 20-27 JJ denotes genetic
T6754 28-38 NN denotes background
T6755 39-41 IN denotes on
T6756 42-54 JJ denotes inflammatory
T6757 60-70 NN denotes expression
T6758 55-59 NN denotes gene
T6759 71-73 IN denotes in
T6760 74-76 NN denotes CF
T6761 77-82 NN denotes mouse
T6762 89-98 NN denotes intestine
T6763 83-88 JJ denotes small
T6764 98-99 . denotes .
T6765 99-199 sentence denotes RNA expression levels were determined by quantitative real-time RT-PCR using gene-specific primers.
T6766 100-103 NN denotes RNA
T6767 115-121 NNS denotes levels
T6768 104-114 NN denotes expression
T6769 127-137 VBN denotes determined
T6770 122-126 VBD denotes were
T6771 138-140 IN denotes by
T6772 141-153 JJ denotes quantitative
T6773 167-170 NN denotes PCR
T6774 154-158 JJ denotes real
T6775 159-163 NN denotes time
T6776 158-159 HYPH denotes -
T6777 164-166 NN denotes RT
T6778 166-167 HYPH denotes -
T6779 171-176 VBG denotes using
T6780 177-181 NN denotes gene
T6781 182-190 JJ denotes specific
T6782 181-182 HYPH denotes -
T6783 191-198 NNS denotes primers
T6784 198-199 . denotes .
T6785 199-293 sentence denotes Data are expressed relative to GAPDH mRNA, which does not vary between wild type and CF mice.
T6786 200-204 NNS denotes Data
T6787 209-218 VBN denotes expressed
T6788 205-208 VBP denotes are
T6789 219-227 JJ denotes relative
T6790 228-230 IN denotes to
T6791 231-236 NN denotes GAPDH
T6792 237-241 NN denotes mRNA
T6793 241-243 , denotes ,
T6794 243-248 WDT denotes which
T6795 258-262 VB denotes vary
T6796 249-253 VBZ denotes does
T6797 254-257 RB denotes not
T6798 263-270 IN denotes between
T6799 271-275 JJ denotes wild
T6800 276-280 NN denotes type
T6801 288-292 NNS denotes mice
T6802 281-284 CC denotes and
T6803 285-287 NN denotes CF
T6804 292-293 . denotes .
T6805 293-315 sentence denotes Data are means ± SEM.
T6806 294-298 NNS denotes Data
T6807 299-302 VBP denotes are
T6808 303-308 NNS denotes means
T6809 311-314 NN denotes SEM
T6810 309-310 SYM denotes ±
T6811 314-315 . denotes .
T6812 315-475 sentence denotes (*) CF vs wild type on the B6 background, P < 0.005; (+) CF on the mixed background vs CF on the B6 background, P < 0.05 by ANOVA with a post-hoc Tukey's test.
T6813 316-317 -LRB- denotes (
T6814 317-318 LS denotes *
T6815 362-367 CD denotes 0.005
T6816 318-319 -RRB- denotes )
T6817 320-322 NN denotes CF
T6818 323-325 CC denotes vs
T6819 326-330 JJ denotes wild
T6820 331-335 NN denotes type
T6821 336-338 IN denotes on
T6822 339-342 DT denotes the
T6823 346-356 NN denotes background
T6824 343-345 NN denotes B6
T6825 356-358 , denotes ,
T6826 358-359 NN denotes P
T6827 360-361 SYM denotes <
T6828 373-375 NN denotes CF
T6829 367-368 : denotes ;
T6830 369-370 -LRB- denotes (
T6831 370-371 LS denotes +
T6832 371-372 -RRB- denotes )
T6833 376-378 IN denotes on
T6834 379-382 DT denotes the
T6835 389-399 NN denotes background
T6836 383-388 JJ denotes mixed
T6837 400-402 CC denotes vs
T6838 403-405 NN denotes CF
T6839 406-408 IN denotes on
T6840 409-412 DT denotes the
T6841 416-426 NN denotes background
T6842 413-415 NN denotes B6
T6843 426-428 , denotes ,
T6844 428-429 NN denotes P
T6845 432-436 CD denotes 0.05
T6846 430-431 SYM denotes <
T6847 437-439 IN denotes by
T6848 440-445 NN denotes ANOVA
T6849 446-450 IN denotes with
T6850 451-452 DT denotes a
T6851 470-474 NN denotes test
T6852 453-461 JJ denotes post-hoc
T6853 462-467 NNP denotes Tukey
T6854 467-469 POS denotes 's
T6855 474-475 . denotes .
T6856 475-666 sentence denotes There were no significant differences for any of the 6 genes comparing: wild type B6 mice vs wild type mixed background; or CF mice on the mixed background vs wild type on either background.
T6857 476-481 EX denotes There
T6858 482-486 VBD denotes were
T6859 487-489 DT denotes no
T6860 502-513 NNS denotes differences
T6861 490-501 JJ denotes significant
T6862 514-517 IN denotes for
T6863 518-521 DT denotes any
T6864 522-524 IN denotes of
T6865 525-528 DT denotes the
T6866 531-536 NNS denotes genes
T6867 529-530 CD denotes 6
T6868 537-546 VBG denotes comparing
T6869 546-548 : denotes :
T6870 548-552 JJ denotes wild
T6871 553-557 NN denotes type
T6872 561-565 NNS denotes mice
T6873 558-560 NN denotes B6
T6874 566-568 CC denotes vs
T6875 569-573 JJ denotes wild
T6876 574-578 NN denotes type
T6877 585-595 NN denotes background
T6878 579-584 JJ denotes mixed
T6879 595-596 : denotes ;
T6880 597-599 CC denotes or
T6881 600-602 NN denotes CF
T6882 603-607 NNS denotes mice
T6883 608-610 IN denotes on
T6884 611-614 DT denotes the
T6885 621-631 NN denotes background
T6886 615-620 JJ denotes mixed
T6887 632-634 CC denotes vs
T6888 635-639 JJ denotes wild
T6889 640-644 NN denotes type
T6890 645-647 IN denotes on
T6891 648-654 DT denotes either
T6892 655-665 NN denotes background
T6893 665-666 . denotes .
T6894 666-724 sentence denotes There were 8–11 samples analyzed per group for each gene.
T6895 667-672 EX denotes There
T6896 673-677 VBD denotes were
T6897 678-679 CD denotes 8
T6898 680-682 CD denotes 11
T6899 679-680 SYM denotes –
T6900 683-690 NNS denotes samples
T6901 691-699 VBN denotes analyzed
T6902 700-703 IN denotes per
T6903 704-709 NN denotes group
T6904 710-713 IN denotes for
T6905 714-718 DT denotes each
T6906 719-723 NN denotes gene
T6907 723-724 . denotes .
R4516 T6752 T6751 prep of,Effect
R4517 T6753 T6754 amod genetic,background
R4518 T6754 T6752 pobj background,of
R4519 T6755 T6751 prep on,Effect
R4520 T6756 T6757 amod inflammatory,expression
R4521 T6757 T6755 pobj expression,on
R4522 T6758 T6757 compound gene,expression
R4523 T6759 T6751 prep in,Effect
R4524 T6760 T6761 nmod CF,mouse
R4525 T6761 T6762 nmod mouse,intestine
R4526 T6762 T6759 pobj intestine,in
R4527 T6763 T6762 amod small,intestine
R4528 T6764 T6751 punct .,Effect
R4529 T6766 T6767 compound RNA,levels
R4530 T6767 T6769 nsubjpass levels,determined
R4531 T6768 T6767 compound expression,levels
R4532 T6770 T6769 auxpass were,determined
R4533 T6771 T6769 prep by,determined
R4534 T6772 T6773 amod quantitative,PCR
R4535 T6773 T6771 pobj PCR,by
R4536 T6774 T6775 amod real,time
R4537 T6775 T6773 compound time,PCR
R4538 T6776 T6775 punct -,time
R4539 T6777 T6773 compound RT,PCR
R4540 T6778 T6773 punct -,PCR
R4541 T6779 T6769 advcl using,determined
R4542 T6780 T6781 npadvmod gene,specific
R4543 T6781 T6783 amod specific,primers
R4544 T6782 T6781 punct -,specific
R4545 T6783 T6779 dobj primers,using
R4546 T6784 T6769 punct .,determined
R4547 T6786 T6787 nsubjpass Data,expressed
R4548 T6788 T6787 auxpass are,expressed
R4549 T6789 T6787 advcl relative,expressed
R4550 T6790 T6789 prep to,relative
R4551 T6791 T6792 compound GAPDH,mRNA
R4552 T6792 T6790 pobj mRNA,to
R4553 T6793 T6792 punct ", ",mRNA
R4554 T6794 T6795 dep which,vary
R4555 T6795 T6792 relcl vary,mRNA
R4556 T6796 T6795 aux does,vary
R4557 T6797 T6795 neg not,vary
R4558 T6798 T6795 prep between,vary
R4559 T6799 T6800 amod wild,type
R4560 T6800 T6801 nmod type,mice
R4561 T6801 T6798 pobj mice,between
R4562 T6802 T6800 cc and,type
R4563 T6803 T6800 conj CF,type
R4564 T6804 T6787 punct .,expressed
R4565 T6806 T6807 nsubj Data,are
R4566 T6808 T6809 nmod means,SEM
R4567 T6809 T6807 attr SEM,are
R4568 T6810 T6809 punct ±,SEM
R4569 T6811 T6807 punct .,are
R4570 T6813 T6814 punct (,*
R4571 T6814 T6815 meta *,0.005
R4572 T6815 T6828 dep 0.005,CF
R4573 T6816 T6814 punct ),*
R4574 T6817 T6815 dep CF,0.005
R4575 T6818 T6817 cc vs,CF
R4576 T6819 T6820 amod wild,type
R4577 T6820 T6817 conj type,CF
R4578 T6821 T6817 prep on,CF
R4579 T6822 T6823 det the,background
R4580 T6823 T6821 pobj background,on
R4581 T6824 T6823 compound B6,background
R4582 T6825 T6815 punct ", ",0.005
R4583 T6826 T6815 nsubj P,0.005
R4584 T6827 T6815 punct <,0.005
R4585 T6829 T6828 punct ;,CF
R4586 T6830 T6831 punct (,+
R4587 T6831 T6828 meta +,CF
R4588 T6832 T6831 punct ),+
R4589 T6833 T6828 prep on,CF
R4590 T6834 T6835 det the,background
R4591 T6835 T6833 pobj background,on
R4592 T6836 T6835 amod mixed,background
R4593 T6837 T6828 cc vs,CF
R4594 T6838 T6828 conj CF,CF
R4595 T6839 T6838 prep on,CF
R4596 T6840 T6841 det the,background
R4597 T6841 T6839 pobj background,on
R4598 T6842 T6841 compound B6,background
R4599 T6843 T6828 punct ", ",CF
R4600 T6844 T6845 nsubj P,0.05
R4601 T6845 T6828 dep 0.05,CF
R4602 T6846 T6845 punct <,0.05
R4603 T6847 T6845 prep by,0.05
R4604 T6848 T6847 pobj ANOVA,by
R4605 T6849 T6845 prep with,0.05
R4606 T6850 T6851 det a,test
R4607 T6851 T6849 pobj test,with
R4608 T6852 T6851 amod post-hoc,test
R4609 T6853 T6851 poss Tukey,test
R4610 T6854 T6853 case 's,Tukey
R4611 T6855 T6828 punct .,CF
R4612 T6857 T6858 expl There,were
R4613 T6859 T6860 det no,differences
R4614 T6860 T6858 attr differences,were
R4615 T6861 T6860 amod significant,differences
R4616 T6862 T6858 prep for,were
R4617 T6863 T6862 pobj any,for
R4618 T6864 T6863 prep of,any
R4619 T6865 T6866 det the,genes
R4620 T6866 T6864 pobj genes,of
R4621 T6867 T6866 nummod 6,genes
R4622 T6868 T6866 acl comparing,genes
R4623 T6869 T6868 punct : ,comparing
R4624 T6870 T6871 amod wild,type
R4625 T6871 T6872 compound type,mice
R4626 T6872 T6868 dobj mice,comparing
R4627 T6873 T6872 compound B6,mice
R4628 T6874 T6872 cc vs,mice
R4629 T6875 T6876 amod wild,type
R4630 T6876 T6877 nmod type,background
R4631 T6877 T6872 conj background,mice
R4632 T6878 T6877 amod mixed,background
R4633 T6879 T6872 punct ;,mice
R4634 T6880 T6872 cc or,mice
R4635 T6881 T6882 compound CF,mice
R4636 T6882 T6872 conj mice,mice
R4637 T6883 T6882 prep on,mice
R4638 T6884 T6885 det the,background
R4639 T6885 T6883 pobj background,on
R4640 T6886 T6885 amod mixed,background
R4641 T6887 T6882 cc vs,mice
R4642 T6888 T6889 amod wild,type
R4643 T6889 T6882 conj type,mice
R4644 T6890 T6889 prep on,type
R4645 T6891 T6892 det either,background
R4646 T6892 T6890 pobj background,on
R4647 T6893 T6858 punct .,were
R4648 T6895 T6896 expl There,were
R4649 T6897 T6898 quantmod 8,11
R4650 T6898 T6900 nummod 11,samples
R4651 T6899 T6898 punct –,11
R4652 T6900 T6896 attr samples,were
R4653 T6901 T6900 acl analyzed,samples
R4654 T6902 T6901 prep per,analyzed
R4655 T6903 T6902 pobj group,per
R4656 T6904 T6901 prep for,analyzed
R4657 T6905 T6906 det each,gene
R4658 T6906 T6904 pobj gene,for
R4659 T6907 T6896 punct .,were

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T6728 20-27 SO_EXT:0000704 denotes genetic
T6729 42-54 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammatory
T6730 55-59 SO_EXT:0000704 denotes gene
T6731 55-70 GO:0010467 denotes gene expression
T6732 77-82 NCBITaxon:10088 denotes mouse
T6733 83-98 UBERON:0002108 denotes small intestine
T6734 100-103 CHEBI_SO_EXT:RNA denotes RNA
T6735 104-114 GO:0010467 denotes expression
T6736 164-166 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T6737 177-181 SO_EXT:0000704 denotes gene
T6738 191-198 SO_EXT:0000112 denotes primers
T6739 231-236 GO_PR_EXT:glyceraldehyde_3_phosphate_dehydrogenase denotes GAPDH
T6740 237-241 CHEBI_SO_EXT:mRNA denotes mRNA
T6741 271-280 SO_EXT:wild_type_entity_or_quality denotes wild type
T6742 288-292 NCBITaxon:10088 denotes mice
T6743 326-335 SO_EXT:wild_type_entity_or_quality denotes wild type
T6744 531-536 SO_EXT:0000704 denotes genes
T6745 548-557 SO_EXT:wild_type_entity_or_quality denotes wild type
T6746 561-565 NCBITaxon:10088 denotes mice
T6747 569-578 SO_EXT:wild_type_entity_or_quality denotes wild type
T6748 603-607 NCBITaxon:10088 denotes mice
T6749 635-644 SO_EXT:wild_type_entity_or_quality denotes wild type
T6750 719-723 SO_EXT:0000704 denotes gene

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T6715 20-27 SO:0000704 denotes genetic
T6716 55-59 SO:0000704 denotes gene
T6717 55-70 GO:0010467 denotes gene expression
T6718 77-82 NCBITaxon:10088 denotes mouse
T6719 83-98 UBERON:0002108 denotes small intestine
T6720 104-114 GO:0010467 denotes expression
T6721 177-181 SO:0000704 denotes gene
T6722 191-198 SO:0000112 denotes primers
T6723 288-292 NCBITaxon:10088 denotes mice
T6724 531-536 SO:0000704 denotes genes
T6725 561-565 NCBITaxon:10088 denotes mice
T6726 603-607 NCBITaxon:10088 denotes mice
T6727 719-723 SO:0000704 denotes gene