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PMC:1166548 / 696-1690 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T264 11-15 NN denotes chow
T265 5-10 NN denotes mouse
T266 15-17 , denotes ,
T267 17-21 VBP denotes have
T268 22-34 NN denotes inflammation
T269 35-37 IN denotes of
T270 38-41 DT denotes the
T271 48-57 NN denotes intestine
T272 42-47 JJ denotes small
T273 57-59 , denotes ,
T274 59-62 CC denotes and
T275 63-66 VBP denotes are
T276 67-72 IN denotes about
T277 73-75 CD denotes 30
T278 75-76 NN denotes %
T279 77-84 JJR denotes smaller
T280 85-89 IN denotes than
T281 90-94 JJ denotes wild
T282 95-99 NN denotes type
T283 100-111 NNS denotes littermates
T284 111-112 . denotes .
T285 112-197 sentence denotes In this work potential modifier loci of the CF intestinal phenotype were identified.
T286 113-115 IN denotes In
T287 186-196 VBN denotes identified
T288 116-120 DT denotes this
T289 121-125 NN denotes work
T290 126-135 NN denotes potential
T291 145-149 NNS denotes loci
T292 136-144 NN denotes modifier
T293 150-152 IN denotes of
T294 153-156 DT denotes the
T295 171-180 NN denotes phenotype
T296 157-159 NN denotes CF
T297 160-170 JJ denotes intestinal
T298 181-185 VBD denotes were
T299 196-197 . denotes .
T300 197-206 sentence denotes Results
T301 199-206 NNS denotes Results
T302 206-386 sentence denotes CF mice on a mixed genetic background (95% C57Bl/6 and 5% 129Sv) were compared to CF mice congenic on the C57Bl/6 background for several parameters of the intestinal CF phenotype.
T303 207-209 NN denotes CF
T304 210-214 NNS denotes mice
T305 277-285 VBN denotes compared
T306 215-217 IN denotes on
T307 218-219 DT denotes a
T308 234-244 NN denotes background
T309 220-225 JJ denotes mixed
T310 226-233 JJ denotes genetic
T311 245-246 -LRB- denotes (
T312 250-255 NN denotes C57Bl
T313 246-248 CD denotes 95
T314 248-249 NN denotes %
T315 255-256 HYPH denotes /
T316 256-257 CD denotes 6
T317 258-261 CC denotes and
T318 262-263 CD denotes 5
T319 265-270 NN denotes 129Sv
T320 263-264 NN denotes %
T321 270-271 -RRB- denotes )
T322 272-276 VBD denotes were
T323 286-288 IN denotes to
T324 289-291 NN denotes CF
T325 292-296 NNS denotes mice
T326 297-305 JJ denotes congenic
T327 306-308 IN denotes on
T328 309-312 DT denotes the
T329 321-331 NN denotes background
T330 313-318 NN denotes C57Bl
T331 318-319 HYPH denotes /
T332 319-320 CD denotes 6
T333 332-335 IN denotes for
T334 336-343 JJ denotes several
T335 344-354 NNS denotes parameters
T336 355-357 IN denotes of
T337 358-361 DT denotes the
T338 376-385 NN denotes phenotype
T339 362-372 JJ denotes intestinal
T340 373-375 NN denotes CF
T341 385-386 . denotes .
T342 386-669 sentence denotes CF mice on the mixed background exhibit significantly greater survival when fed dry mouse chow, have reduced intestinal inflammation as measured by quantitative RT-PCR for marker genes, have near normal body weight gain, and have reduced mucus accumulation in the intestinal crypts.
T343 387-389 NN denotes CF
T344 390-394 NNS denotes mice
T345 419-426 VBP denotes exhibit
T346 395-397 IN denotes on
T347 398-401 DT denotes the
T348 408-418 NN denotes background
T349 402-407 JJ denotes mixed
T350 427-440 RB denotes significantly
T351 441-448 JJR denotes greater
T352 449-457 NN denotes survival
T353 458-462 WRB denotes when
T354 463-466 VBN denotes fed
T355 467-470 JJ denotes dry
T356 477-481 NN denotes chow
T357 471-476 NN denotes mouse
T358 481-483 , denotes ,
T359 483-487 VBP denotes have
T360 488-495 VBN denotes reduced
T361 507-519 NN denotes inflammation
T362 496-506 JJ denotes intestinal
T363 520-522 IN denotes as
T364 523-531 VBN denotes measured
T365 532-534 IN denotes by
T366 535-547 JJ denotes quantitative
T367 551-554 NN denotes PCR
T368 548-550 NN denotes RT
T369 550-551 HYPH denotes -
T370 555-558 IN denotes for
T371 559-565 NN denotes marker
T372 566-571 NNS denotes genes
T373 571-573 , denotes ,
T374 573-577 VBP denotes have
T375 578-582 RB denotes near
T376 583-589 JJ denotes normal
T377 602-606 NN denotes gain
T378 590-594 NN denotes body
T379 595-601 NN denotes weight
T380 606-608 , denotes ,
T381 608-611 CC denotes and
T382 612-616 VBP denotes have
T383 617-624 VBN denotes reduced
T384 631-643 NN denotes accumulation
T385 625-630 NN denotes mucus
T386 644-646 IN denotes in
T387 647-650 DT denotes the
T388 662-668 NNS denotes crypts
T389 651-661 JJ denotes intestinal
T390 668-669 . denotes .
T391 669-892 sentence denotes There was an indication of a gender effect for body weight gain: males did not show a significant improvement at 4 weeks of age, but were of normal weight at 8 weeks, while females showed improvement at both 4 and 8 weeks.
T392 670-675 EX denotes There
T393 676-679 VBD denotes was
T394 749-753 VB denotes show
T395 680-682 DT denotes an
T396 683-693 NN denotes indication
T397 694-696 IN denotes of
T398 697-698 DT denotes a
T399 706-712 NN denotes effect
T400 699-705 NN denotes gender
T401 713-716 IN denotes for
T402 717-721 NN denotes body
T403 729-733 NN denotes gain
T404 722-728 NN denotes weight
T405 733-735 : denotes :
T406 735-740 NNS denotes males
T407 741-744 VBD denotes did
T408 745-748 RB denotes not
T409 754-755 DT denotes a
T410 768-779 NN denotes improvement
T411 756-767 JJ denotes significant
T412 780-782 IN denotes at
T413 783-784 CD denotes 4
T414 785-790 NNS denotes weeks
T415 791-793 IN denotes of
T416 794-797 NN denotes age
T417 797-799 , denotes ,
T418 799-802 CC denotes but
T419 803-807 VBD denotes were
T420 808-810 IN denotes of
T421 811-817 JJ denotes normal
T422 818-824 NN denotes weight
T423 825-827 IN denotes at
T424 828-829 CD denotes 8
T425 830-835 NNS denotes weeks
T426 835-837 , denotes ,
T427 837-842 IN denotes while
T428 851-857 VBD denotes showed
T429 843-850 NNS denotes females
T430 858-869 NN denotes improvement
T431 870-872 IN denotes at
T432 873-877 CC denotes both
T433 878-879 CD denotes 4
T434 886-891 NNS denotes weeks
T435 880-883 CC denotes and
T436 884-885 CD denotes 8
T437 891-892 . denotes .
T439 893-895 IN denotes By
T440 962-967 VBN denotes found
T441 896-897 DT denotes a
T442 933-941 NN denotes scanning
T443 898-909 JJ denotes preliminary
T444 910-916 NN denotes genome
T445 917-921 JJ denotes wide
T446 916-917 HYPH denotes -
T447 922-925 NN denotes PCR
T448 926-932 NN denotes allele
T449 941-943 , denotes ,
T450 943-948 CD denotes three
T451 949-956 NNS denotes regions
T452 957-961 VBD denotes were
T453 968-970 TO denotes to
T455 971-973 VB denotes be
T456 974-985 RB denotes potentially
R116 T268 T267 dobj inflammation,have
R117 T269 T268 prep of,inflammation
R118 T270 T271 det the,intestine
R119 T271 T269 pobj intestine,of
R121 T273 T267 punct ", ",have
R122 T274 T267 cc and,have
R123 T275 T267 conj are,have
R124 T276 T277 quantmod about,30
R125 T277 T278 nummod 30,%
R126 T278 T279 npadvmod %,smaller
R127 T279 T275 acomp smaller,are
R128 T280 T279 prep than,smaller
R129 T281 T282 amod wild,type
R130 T282 T283 compound type,littermates
R131 T283 T280 pobj littermates,than
R133 T286 T287 prep In,identified
R134 T288 T289 det this,work
R135 T289 T286 pobj work,In
R136 T290 T291 compound potential,loci
R137 T291 T287 nsubjpass loci,identified
R139 T293 T291 prep of,loci
R140 T294 T295 det the,phenotype
R141 T295 T293 pobj phenotype,of
R144 T298 T287 auxpass were,identified
R145 T299 T287 punct .,identified
R146 T303 T304 compound CF,mice
R147 T304 T305 nsubjpass mice,compared
R148 T306 T304 prep on,mice
R149 T307 T308 det a,background
R150 T308 T306 pobj background,on
R153 T311 T312 punct (,C57Bl
R154 T312 T304 parataxis C57Bl,mice
R157 T315 T312 punct /,C57Bl
R158 T316 T312 nummod 6,C57Bl
R159 T317 T312 cc and,C57Bl
R160 T318 T319 nummod 5,129Sv
R161 T319 T312 conj 129Sv,C57Bl
R163 T321 T312 punct ),C57Bl
R164 T322 T305 auxpass were,compared
R165 T323 T305 prep to,compared
R166 T324 T325 compound CF,mice
R167 T325 T323 pobj mice,to
R168 T326 T325 amod congenic,mice
R169 T327 T326 prep on,congenic
R170 T328 T329 det the,background
R171 T329 T327 pobj background,on
R175 T333 T305 prep for,compared
R176 T334 T335 amod several,parameters
R177 T335 T333 pobj parameters,for
R178 T336 T335 prep of,parameters
R179 T337 T338 det the,phenotype
R180 T338 T336 pobj phenotype,of
R183 T341 T305 punct .,compared
R184 T343 T344 compound CF,mice
R185 T344 T345 nsubj mice,exhibit
R186 T346 T344 prep on,mice
R187 T347 T348 det the,background
R188 T348 T346 pobj background,on
R190 T350 T351 advmod significantly,greater
R191 T351 T352 amod greater,survival
R192 T352 T345 dobj survival,exhibit
R193 T353 T354 advmod when,fed
R194 T354 T345 advcl fed,exhibit
R195 T355 T356 amod dry,chow
R196 T356 T354 dobj chow,fed
R198 T358 T345 punct ", ",exhibit
R199 T359 T345 conj have,exhibit
R200 T360 T361 amod reduced,inflammation
R201 T361 T359 dobj inflammation,have
R203 T363 T364 mark as,measured
R204 T364 T359 advcl measured,have
R205 T365 T364 prep by,measured
R206 T366 T367 amod quantitative,PCR
R207 T367 T365 pobj PCR,by
R210 T370 T367 prep for,PCR
R211 T371 T372 compound marker,genes
R212 T372 T370 pobj genes,for
R213 T373 T359 punct ", ",have
R214 T374 T359 conj have,have
R215 T375 T376 advmod near,normal
R216 T376 T377 amod normal,gain
R217 T377 T374 dobj gain,have
R220 T380 T374 punct ", ",have
R221 T381 T374 cc and,have
R222 T382 T374 conj have,have
R223 T383 T384 amod reduced,accumulation
R224 T384 T382 dobj accumulation,have
R226 T386 T382 prep in,have
R227 T387 T388 det the,crypts
R228 T388 T386 pobj crypts,in
R230 T390 T345 punct .,exhibit
R231 T392 T393 expl There,was
R232 T393 T394 ccomp was,show
R233 T395 T396 det an,indication
R234 T396 T393 attr indication,was
R235 T397 T396 prep of,indication
R236 T398 T399 det a,effect
R237 T399 T397 pobj effect,of
R239 T401 T399 prep for,effect
R240 T402 T403 compound body,gain
R241 T403 T401 pobj gain,for
R243 T405 T394 punct : ,show
R244 T406 T394 nsubj males,show
R245 T407 T394 aux did,show
R246 T408 T394 neg not,show
R247 T409 T410 det a,improvement
R248 T410 T394 dobj improvement,show
R250 T412 T394 prep at,show
R251 T413 T414 nummod 4,weeks
R252 T414 T412 pobj weeks,at
R253 T415 T414 prep of,weeks
R254 T416 T415 pobj age,of
R255 T417 T394 punct ", ",show
R256 T418 T394 cc but,show
R257 T419 T394 conj were,show
R258 T420 T419 prep of,were
R259 T421 T422 amod normal,weight
R260 T422 T420 pobj weight,of
R261 T423 T419 prep at,were
R262 T424 T425 nummod 8,weeks
R263 T425 T423 pobj weeks,at
R264 T426 T394 punct ", ",show
R265 T427 T428 mark while,showed
R266 T428 T394 advcl showed,show
R268 T430 T428 dobj improvement,showed
R269 T431 T428 prep at,showed
R270 T432 T433 preconj both,4
R271 T433 T434 nummod 4,weeks
R272 T434 T431 pobj weeks,at
R275 T437 T394 punct .,show
R276 T439 T440 prep By,found
R277 T441 T442 det a,scanning
R278 T442 T439 pobj scanning,By
R281 T445 T442 amod wide,scanning
R282 T446 T445 punct -,wide
R285 T449 T440 punct ", ",found
R286 T450 T451 nummod three,regions
R287 T451 T440 nsubjpass regions,found
R288 T452 T440 auxpass were,found
R113 T265 T264 compound mouse,chow
R120 T272 T271 amod small,intestine
R138 T292 T291 compound modifier,loci
R142 T296 T295 nmod CF,phenotype
R143 T297 T295 amod intestinal,phenotype
R151 T309 T308 amod mixed,background
R152 T310 T308 amod genetic,background
R155 T313 T312 nummod 95,C57Bl
R156 T314 T313 quantmod %,95
R162 T320 T318 quantmod %,5
R172 T330 T329 nmod C57Bl,background
R173 T331 T330 punct /,C57Bl
R174 T332 T330 nummod 6,C57Bl
R181 T339 T338 amod intestinal,phenotype
R182 T340 T338 compound CF,phenotype
R189 T349 T348 amod mixed,background
R197 T357 T356 compound mouse,chow
R202 T362 T361 amod intestinal,inflammation
R208 T368 T367 compound RT,PCR
R209 T369 T367 punct -,PCR
R218 T378 T379 compound body,weight
R219 T379 T377 compound weight,gain
R225 T385 T384 compound mucus,accumulation
R229 T389 T388 amod intestinal,crypts
R238 T400 T399 compound gender,effect
R242 T404 T403 compound weight,gain
R249 T411 T410 amod significant,improvement
R267 T429 T428 nsubj females,showed
R273 T435 T433 cc and,4
R274 T436 T433 conj 8,4
R279 T443 T442 amod preliminary,scanning
R280 T444 T445 npadvmod genome,wide
R283 T447 T448 compound PCR,allele
R284 T448 T442 compound allele,scanning

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T98 5-10 NCBITaxon:10088 denotes mouse
T99 11-15 CHEBI_EXT:33290 denotes chow
T100 22-34 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammation
T101 42-57 UBERON:0002108 denotes small intestine
T102 90-99 SO_EXT:wild_type_entity_or_quality denotes wild type
T103 160-170 UBERON:0000160 denotes intestinal
T104 210-214 NCBITaxon:10088 denotes mice
T105 226-233 SO_EXT:0000704 denotes genetic
T106 292-296 NCBITaxon:10088 denotes mice
T107 362-372 UBERON:0000160 denotes intestinal
T108 390-394 NCBITaxon:10088 denotes mice
T109 463-466 GO:0007631 denotes fed
T110 471-476 NCBITaxon:10088 denotes mouse
T111 477-481 CHEBI_EXT:33290 denotes chow
T112 496-506 UBERON:0000160 denotes intestinal
T113 507-519 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammation
T114 548-550 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T115 559-565 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T116 566-571 SO_EXT:0000704 denotes genes
T117 590-594 UBERON_EXT:body denotes body
T118 625-630 UBERON:0000912 denotes mucus
T119 651-668 UBERON:0001983 denotes intestinal crypts
T120 717-721 UBERON_EXT:body denotes body
T121 735-740 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes males
T122 843-850 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females
T123 910-916 SO_EXT:0001026 denotes genome
T124 926-932 SO_EXT:0001023 denotes allele

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T50 5-10 NCBITaxon:10088 denotes mouse
T51 11-15 CHEBI:33290 denotes chow
T52 42-57 UBERON:0002108 denotes small intestine
T53 160-170 UBERON:0000160 denotes intestinal
T54 210-214 NCBITaxon:10088 denotes mice
T55 226-233 SO:0000704 denotes genetic
T56 292-296 NCBITaxon:10088 denotes mice
T57 362-372 UBERON:0000160 denotes intestinal
T58 390-394 NCBITaxon:10088 denotes mice
T59 463-466 GO:0007631 denotes fed
T60 471-476 NCBITaxon:10088 denotes mouse
T61 477-481 CHEBI:33290 denotes chow
T62 496-506 UBERON:0000160 denotes intestinal
T63 566-571 SO:0000704 denotes genes
T64 625-630 UBERON:0000912 denotes mucus
T65 651-668 UBERON:0001983 denotes intestinal crypts
T66 910-916 SO:0001026 denotes genome
T67 926-932 SO:0001023 denotes allele