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PMC:1166548 / 6902-10734 JSONTXT

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Id Subject Object Predicate Lexical cue
T1974 0-2 NN denotes CF
T1975 3-7 NNS denotes mice
T1976 32-36 VBP denotes have
T1977 8-10 IN denotes on
T1978 11-14 DT denotes the
T1979 21-31 NN denotes background
T1980 15-20 JJ denotes mixed
T1981 37-44 VBN denotes reduced
T1982 45-55 NN denotes expression
T1983 56-58 IN denotes of
T1984 59-71 JJ denotes inflammatory
T1985 72-79 NNS denotes markers
T1986 79-196 sentence denotes Previous work showed that CF mice on the B6 background have an innate-type inflammation of the small intestine [21].
T1987 80-88 JJ denotes Previous
T1988 89-93 NN denotes work
T1989 94-100 VBD denotes showed
T1990 101-105 IN denotes that
T1991 135-139 VBP denotes have
T1992 106-108 NN denotes CF
T1993 109-113 NNS denotes mice
T1994 114-116 IN denotes on
T1995 117-120 DT denotes the
T1996 124-134 NN denotes background
T1997 121-123 NN denotes B6
T1998 140-142 DT denotes an
T1999 155-167 NN denotes inflammation
T2000 143-149 JJ denotes innate
T2001 150-154 NN denotes type
T2002 149-150 HYPH denotes -
T2003 168-170 IN denotes of
T2004 171-174 DT denotes the
T2005 181-190 NN denotes intestine
T2006 175-180 JJ denotes small
T2007 191-192 -LRB- denotes [
T2008 192-194 CD denotes 21
T2009 194-195 -RRB- denotes ]
T2010 195-196 . denotes .
T2011 196-364 sentence denotes To determine whether the mixed genetic background affected expression of inflammatory marker genes, quantitative, real-time RT-PCR was used to measure gene expression.
T2012 197-199 TO denotes To
T2013 200-209 VB denotes determine
T2014 332-336 VBN denotes used
T2015 210-217 IN denotes whether
T2016 247-255 VBD denotes affected
T2017 218-221 DT denotes the
T2018 236-246 NN denotes background
T2019 222-227 JJ denotes mixed
T2020 228-235 JJ denotes genetic
T2021 256-266 NN denotes expression
T2022 267-269 IN denotes of
T2023 270-282 JJ denotes inflammatory
T2024 290-295 NNS denotes genes
T2025 283-289 NN denotes marker
T2026 295-297 , denotes ,
T2027 297-309 JJ denotes quantitative
T2028 324-327 NN denotes PCR
T2029 309-311 , denotes ,
T2030 311-315 JJ denotes real
T2031 316-320 NN denotes time
T2032 315-316 HYPH denotes -
T2033 321-323 NN denotes RT
T2034 323-324 HYPH denotes -
T2035 328-331 VBD denotes was
T2036 337-339 TO denotes to
T2037 340-347 VB denotes measure
T2038 348-352 NN denotes gene
T2039 353-363 NN denotes expression
T2040 363-364 . denotes .
T2041 364-474 sentence denotes Expression of the following genes was compared in wild type and CF mice on the different genetic backgrounds.
T2042 365-375 NN denotes Expression
T2043 403-411 VBN denotes compared
T2044 376-378 IN denotes of
T2045 379-382 DT denotes the
T2046 393-398 NNS denotes genes
T2047 383-392 VBG denotes following
T2048 399-402 VBD denotes was
T2049 412-414 IN denotes in
T2050 415-419 JJ denotes wild
T2051 420-424 NN denotes type
T2052 432-436 NNS denotes mice
T2053 425-428 CC denotes and
T2054 429-431 NN denotes CF
T2055 437-439 IN denotes on
T2056 440-443 DT denotes the
T2057 462-473 NNS denotes backgrounds
T2058 444-453 JJ denotes different
T2059 454-461 JJ denotes genetic
T2060 473-474 . denotes .
T2061 474-612 sentence denotes Mast cell protease 2 (Mcpt2) is a marker of differentiated mast cells [22] and mast cells are more abundant in the B6 CF mouse intestine.
T2062 475-479 NN denotes Mast
T2063 485-493 NN denotes protease
T2064 480-484 NN denotes cell
T2065 504-506 VBZ denotes is
T2066 494-495 CD denotes 2
T2067 496-497 -LRB- denotes (
T2068 497-502 NN denotes Mcpt2
T2069 502-503 -RRB- denotes )
T2070 507-508 DT denotes a
T2071 509-515 NN denotes marker
T2072 516-518 IN denotes of
T2073 519-533 VBN denotes differentiated
T2074 539-544 NNS denotes cells
T2075 534-538 NN denotes mast
T2076 545-546 -LRB- denotes [
T2077 546-548 CD denotes 22
T2078 548-549 -RRB- denotes ]
T2079 550-553 CC denotes and
T2080 554-558 NN denotes mast
T2081 559-564 NNS denotes cells
T2082 565-568 VBP denotes are
T2083 569-573 RBR denotes more
T2084 574-582 JJ denotes abundant
T2085 583-585 IN denotes in
T2086 586-589 DT denotes the
T2087 602-611 NN denotes intestine
T2088 590-592 NN denotes B6
T2089 593-595 NN denotes CF
T2090 596-601 NN denotes mouse
T2091 611-612 . denotes .
T2092 612-752 sentence denotes Leucine-rich α2 glycoprotein (Lrg1, [23]) is a marker of differentiating neutrophils, which are more numerous in the B6 CF mouse intestine.
T2093 613-620 NN denotes Leucine
T2094 629-641 NN denotes glycoprotein
T2095 620-621 HYPH denotes -
T2096 621-625 JJ denotes rich
T2097 626-628 NN denotes α2
T2098 655-657 VBZ denotes is
T2099 642-643 -LRB- denotes (
T2100 643-647 NN denotes Lrg1
T2101 647-649 , denotes ,
T2102 649-650 -LRB- denotes [
T2103 650-652 CD denotes 23
T2104 652-653 -RRB- denotes ]
T2105 653-654 -RRB- denotes )
T2106 658-659 DT denotes a
T2107 660-666 NN denotes marker
T2108 667-669 IN denotes of
T2109 670-685 VBG denotes differentiating
T2110 686-697 NNS denotes neutrophils
T2111 697-699 , denotes ,
T2112 699-704 WDT denotes which
T2113 705-708 VBP denotes are
T2114 709-713 RBR denotes more
T2115 714-722 JJ denotes numerous
T2116 723-725 IN denotes in
T2117 726-729 DT denotes the
T2118 742-751 NN denotes intestine
T2119 730-732 NN denotes B6
T2120 736-741 NN denotes mouse
T2121 733-735 NN denotes CF
T2122 751-752 . denotes .
T2123 752-966 sentence denotes The same gene is also known as leucine-rich high endothelial cell glycoprotein (Lrhg) and has been shown to be a marker of high endothelial venules (HEV) [24] which increase in tissues during inflammation [25,26].
T2124 753-756 DT denotes The
T2125 762-766 NN denotes gene
T2126 757-761 JJ denotes same
T2127 775-780 VBN denotes known
T2128 767-769 VBZ denotes is
T2129 770-774 RB denotes also
T2130 781-783 IN denotes as
T2131 784-791 NN denotes leucine
T2132 792-796 JJ denotes rich
T2133 791-792 HYPH denotes -
T2134 819-831 NN denotes glycoprotein
T2135 797-801 JJ denotes high
T2136 802-813 JJ denotes endothelial
T2137 814-818 NN denotes cell
T2138 832-833 -LRB- denotes (
T2139 833-837 NN denotes Lrhg
T2140 837-838 -RRB- denotes )
T2141 839-842 CC denotes and
T2142 843-846 VBZ denotes has
T2143 852-857 VBN denotes shown
T2144 847-851 VBN denotes been
T2145 858-860 TO denotes to
T2146 861-863 VB denotes be
T2147 864-865 DT denotes a
T2148 866-872 NN denotes marker
T2149 873-875 IN denotes of
T2150 876-880 JJ denotes high
T2151 893-900 NNS denotes venules
T2152 881-892 JJ denotes endothelial
T2153 901-902 -LRB- denotes (
T2154 902-905 NN denotes HEV
T2155 905-906 -RRB- denotes )
T2156 907-908 -LRB- denotes [
T2157 908-910 CD denotes 24
T2158 910-911 -RRB- denotes ]
T2159 912-917 WDT denotes which
T2160 918-926 VBP denotes increase
T2161 927-929 IN denotes in
T2162 930-937 NNS denotes tissues
T2163 938-944 IN denotes during
T2164 945-957 NN denotes inflammation
T2165 958-959 -LRB- denotes [
T2166 962-964 CD denotes 26
T2167 959-961 CD denotes 25
T2168 961-962 , denotes ,
T2169 964-965 -RRB- denotes ]
T2170 965-966 . denotes .
T2171 966-1128 sentence denotes Hematopoietic cell transcript 1 (HemT1, [27]) is a marker of blood cell proliferation and its expression is strongly elevated in the B6 CF mouse small intestine.
T2172 967-980 JJ denotes Hematopoietic
T2173 986-996 NN denotes transcript
T2174 981-985 NN denotes cell
T2175 1013-1015 VBZ denotes is
T2176 997-998 CD denotes 1
T2177 999-1000 -LRB- denotes (
T2178 1000-1005 NN denotes HemT1
T2179 1005-1007 , denotes ,
T2180 1007-1008 -LRB- denotes [
T2181 1008-1010 CD denotes 27
T2182 1010-1011 -RRB- denotes ]
T2183 1011-1012 -RRB- denotes )
T2184 1016-1017 DT denotes a
T2185 1018-1024 NN denotes marker
T2186 1025-1027 IN denotes of
T2187 1028-1033 NN denotes blood
T2188 1039-1052 NN denotes proliferation
T2189 1034-1038 NN denotes cell
T2190 1053-1056 CC denotes and
T2191 1057-1060 PRP$ denotes its
T2192 1061-1071 NN denotes expression
T2193 1072-1074 VBZ denotes is
T2194 1075-1083 RB denotes strongly
T2195 1084-1092 JJ denotes elevated
T2196 1093-1095 IN denotes in
T2197 1096-1099 DT denotes the
T2198 1118-1127 NN denotes intestine
T2199 1100-1102 NN denotes B6
T2200 1106-1111 NN denotes mouse
T2201 1103-1105 NN denotes CF
T2202 1112-1117 JJ denotes small
T2203 1127-1128 . denotes .
T2204 1128-1264 sentence denotes Serum amyloid A3 (SAA3, [28]) is an acute phase gene and its expression in villus epithelial cells is increased in the B6 CF intestine.
T2205 1129-1134 NN denotes Serum
T2206 1143-1145 NN denotes A3
T2207 1135-1142 NN denotes amyloid
T2208 1159-1161 VBZ denotes is
T2209 1146-1147 -LRB- denotes (
T2210 1147-1151 NN denotes SAA3
T2211 1151-1153 , denotes ,
T2212 1153-1154 -LRB- denotes [
T2213 1154-1156 CD denotes 28
T2214 1156-1157 -RRB- denotes ]
T2215 1157-1158 -RRB- denotes )
T2216 1162-1164 DT denotes an
T2217 1177-1181 NN denotes gene
T2218 1165-1170 JJ denotes acute
T2219 1171-1176 NN denotes phase
T2220 1182-1185 CC denotes and
T2221 1186-1189 PRP$ denotes its
T2222 1190-1200 NN denotes expression
T2223 1228-1230 VBZ denotes is
T2224 1201-1203 IN denotes in
T2225 1204-1210 NN denotes villus
T2226 1222-1227 NNS denotes cells
T2227 1211-1221 JJ denotes epithelial
T2228 1231-1240 JJ denotes increased
T2229 1241-1243 IN denotes in
T2230 1244-1247 DT denotes the
T2231 1254-1263 NN denotes intestine
T2232 1248-1250 NN denotes B6
T2233 1251-1253 NN denotes CF
T2234 1263-1264 . denotes .
T2235 1264-1439 sentence denotes Suppressor of cytokine signaling 3 (SOCS3, [29]) is an anti-inflammatory gene that interacts with the JAK-STAT pathway and its expression in increased in the B6 CF intestine.
T2236 1265-1275 NN denotes Suppressor
T2237 1314-1316 VBZ denotes is
T2238 1276-1278 IN denotes of
T2239 1279-1287 NN denotes cytokine
T2240 1288-1297 NN denotes signaling
T2241 1298-1299 CD denotes 3
T2242 1300-1301 -LRB- denotes (
T2243 1301-1306 NN denotes SOCS3
T2244 1306-1308 , denotes ,
T2245 1308-1309 -LRB- denotes [
T2246 1309-1311 CD denotes 29
T2247 1311-1312 -RRB- denotes ]
T2248 1312-1313 -RRB- denotes )
T2249 1317-1319 DT denotes an
T2250 1338-1342 NN denotes gene
T2251 1320-1337 JJ denotes anti-inflammatory
T2252 1343-1347 WDT denotes that
T2253 1348-1357 VBZ denotes interacts
T2254 1358-1362 IN denotes with
T2255 1363-1366 DT denotes the
T2256 1376-1383 NN denotes pathway
T2257 1367-1370 NN denotes JAK
T2258 1371-1375 NN denotes STAT
T2259 1370-1371 HYPH denotes -
T2260 1384-1387 CC denotes and
T2261 1388-1391 PRP$ denotes its
T2262 1392-1402 NN denotes expression
T2263 1403-1405 VBZ denotes in
T2264 1406-1415 JJ denotes increased
T2265 1416-1418 IN denotes in
T2266 1419-1422 DT denotes the
T2267 1429-1438 NN denotes intestine
T2268 1423-1425 NN denotes B6
T2269 1426-1428 NN denotes CF
T2270 1438-1439 . denotes .
T2271 1439-1618 sentence denotes Muclin (also known as dmbt1, [30]) expression is upregulated in the B6 CF intestine; it is a cell surface glycoprotein postulated to be an epithelial protective molecule [21,31].
T2272 1440-1446 NN denotes Muclin
T2273 1475-1485 NN denotes expression
T2274 1447-1448 -LRB- denotes (
T2275 1453-1458 VBN denotes known
T2276 1448-1452 RB denotes also
T2277 1459-1461 IN denotes as
T2278 1462-1467 NN denotes dmbt1
T2279 1467-1469 , denotes ,
T2280 1469-1470 -LRB- denotes [
T2281 1470-1472 CD denotes 30
T2282 1472-1473 -RRB- denotes ]
T2283 1473-1474 -RRB- denotes )
T2284 1489-1500 VBN denotes upregulated
T2285 1486-1488 VBZ denotes is
T2286 1528-1530 VBZ denotes is
T2287 1501-1503 IN denotes in
T2288 1504-1507 DT denotes the
T2289 1514-1523 NN denotes intestine
T2290 1508-1510 NN denotes B6
T2291 1511-1513 NN denotes CF
T2292 1523-1524 : denotes ;
T2293 1525-1527 PRP denotes it
T2294 1531-1532 DT denotes a
T2295 1546-1558 NN denotes glycoprotein
T2296 1533-1537 NN denotes cell
T2297 1538-1545 NN denotes surface
T2298 1559-1569 VBN denotes postulated
T2299 1570-1572 TO denotes to
T2300 1573-1575 VB denotes be
T2301 1576-1578 DT denotes an
T2302 1601-1609 NN denotes molecule
T2303 1579-1589 JJ denotes epithelial
T2304 1590-1600 JJ denotes protective
T2305 1610-1611 -LRB- denotes [
T2306 1614-1616 CD denotes 31
T2307 1611-1613 CD denotes 21
T2308 1613-1614 , denotes ,
T2309 1616-1617 -RRB- denotes ]
T2310 1617-1618 . denotes .
T2311 1618-1752 sentence denotes Consistent with previous results, Mcpt2 was increased in CF mice on the B6 background by over 9-fold compared to wild type (Fig. 2A).
T2312 1619-1629 JJ denotes Consistent
T2313 1663-1672 VBN denotes increased
T2314 1630-1634 IN denotes with
T2315 1635-1643 JJ denotes previous
T2316 1644-1651 NNS denotes results
T2317 1651-1653 , denotes ,
T2318 1653-1658 NN denotes Mcpt2
T2319 1659-1662 VBD denotes was
T2320 1673-1675 IN denotes in
T2321 1676-1678 NN denotes CF
T2322 1679-1683 NNS denotes mice
T2323 1684-1686 IN denotes on
T2324 1687-1690 DT denotes the
T2325 1694-1704 NN denotes background
T2326 1691-1693 NN denotes B6
T2327 1705-1707 IN denotes by
T2328 1708-1712 IN denotes over
T2329 1713-1719 RB denotes 9-fold
T2330 1720-1728 VBN denotes compared
T2331 1729-1731 IN denotes to
T2332 1732-1736 JJ denotes wild
T2333 1737-1741 NN denotes type
T2334 1742-1743 -LRB- denotes (
T2335 1743-1747 NN denotes Fig.
T2336 1748-1750 CD denotes 2A
T2337 1750-1751 -RRB- denotes )
T2338 1751-1752 . denotes .
T2339 1752-1884 sentence denotes By contrast, there was not a significant difference in Mcpt2 expression between CF and wild type on the mixed background (Fig. 2A).
T2340 1753-1755 IN denotes By
T2341 1772-1775 VBD denotes was
T2342 1756-1764 NN denotes contrast
T2343 1764-1766 , denotes ,
T2344 1766-1771 EX denotes there
T2345 1776-1779 RB denotes not
T2346 1780-1781 DT denotes a
T2347 1794-1804 NN denotes difference
T2348 1782-1793 JJ denotes significant
T2349 1805-1807 IN denotes in
T2350 1808-1813 NN denotes Mcpt2
T2351 1814-1824 NN denotes expression
T2352 1825-1832 IN denotes between
T2353 1833-1835 NN denotes CF
T2354 1836-1839 CC denotes and
T2355 1840-1844 JJ denotes wild
T2356 1845-1849 NN denotes type
T2357 1850-1852 IN denotes on
T2358 1853-1856 DT denotes the
T2359 1863-1873 NN denotes background
T2360 1857-1862 JJ denotes mixed
T2361 1874-1875 -LRB- denotes (
T2362 1875-1879 NN denotes Fig.
T2363 1880-1882 CD denotes 2A
T2364 1882-1883 -RRB- denotes )
T2365 1883-1884 . denotes .
T2366 1884-2092 sentence denotes Lrg1/Lrhg expression was increased more than 20-fold in CF mice on the B6 background compared to wild type, but there was no significant difference between CF and wild type on the mixed background (Fig. 2B).
T2367 1885-1889 NN denotes Lrg1
T2368 1890-1894 NN denotes Lrhg
T2369 1889-1890 HYPH denotes /
T2370 1895-1905 NN denotes expression
T2371 1910-1919 VBN denotes increased
T2372 1906-1909 VBD denotes was
T2373 1920-1924 RBR denotes more
T2374 1930-1937 RB denotes 20-fold
T2375 1925-1929 IN denotes than
T2376 1938-1940 IN denotes in
T2377 1941-1943 NN denotes CF
T2378 1944-1948 NNS denotes mice
T2379 1949-1951 IN denotes on
T2380 1952-1955 DT denotes the
T2381 1959-1969 NN denotes background
T2382 1956-1958 NN denotes B6
T2383 1970-1978 VBN denotes compared
T2384 1979-1981 IN denotes to
T2385 1982-1986 JJ denotes wild
T2386 1987-1991 NN denotes type
T2387 1991-1993 , denotes ,
T2388 1993-1996 CC denotes but
T2389 1997-2002 EX denotes there
T2390 2003-2006 VBD denotes was
T2391 2007-2009 DT denotes no
T2392 2022-2032 NN denotes difference
T2393 2010-2021 JJ denotes significant
T2394 2033-2040 IN denotes between
T2395 2041-2043 NN denotes CF
T2396 2044-2047 CC denotes and
T2397 2048-2052 JJ denotes wild
T2398 2053-2057 NN denotes type
T2399 2058-2060 IN denotes on
T2400 2061-2064 DT denotes the
T2401 2071-2081 NN denotes background
T2402 2065-2070 JJ denotes mixed
T2403 2082-2083 -LRB- denotes (
T2404 2083-2087 NN denotes Fig.
T2405 2088-2090 CD denotes 2B
T2406 2090-2091 -RRB- denotes )
T2407 2091-2092 . denotes .
T2408 2092-2257 sentence denotes SAA3 mRNA was about 3.5-fold increased in CF mice on the B6 background, but was not significantly different compared to wild type on the mixed background (Fig. 2C).
T2409 2093-2097 NN denotes SAA3
T2410 2098-2102 NN denotes mRNA
T2411 2103-2106 VBD denotes was
T2412 2107-2112 IN denotes about
T2413 2113-2121 RB denotes 3.5-fold
T2414 2122-2131 JJ denotes increased
T2415 2132-2134 IN denotes in
T2416 2135-2137 NN denotes CF
T2417 2138-2142 NNS denotes mice
T2418 2143-2145 IN denotes on
T2419 2146-2149 DT denotes the
T2420 2153-2163 NN denotes background
T2421 2150-2152 NN denotes B6
T2422 2163-2165 , denotes ,
T2423 2165-2168 CC denotes but
T2424 2169-2172 VBD denotes was
T2425 2173-2176 RB denotes not
T2426 2177-2190 RB denotes significantly
T2427 2191-2200 JJ denotes different
T2428 2201-2209 VBN denotes compared
T2429 2210-2212 IN denotes to
T2430 2213-2217 JJ denotes wild
T2431 2218-2222 NN denotes type
T2432 2223-2225 IN denotes on
T2433 2226-2229 DT denotes the
T2434 2236-2246 NN denotes background
T2435 2230-2235 JJ denotes mixed
T2436 2247-2248 -LRB- denotes (
T2437 2248-2252 NN denotes Fig.
T2438 2253-2255 CD denotes 2C
T2439 2255-2256 -RRB- denotes )
T2440 2256-2257 . denotes .
T2441 2257-2469 sentence denotes SOCS3 was more than 2-fold increased in CF mice on the B6 background compared to wild type, and on the mixed background was only 1.5-fold greater than wild type, and the difference was not significant (Fig. 2D).
T2442 2258-2263 NN denotes SOCS3
T2443 2264-2267 VBD denotes was
T2444 2268-2272 JJR denotes more
T2445 2278-2284 RB denotes 2-fold
T2446 2273-2277 IN denotes than
T2447 2285-2294 JJ denotes increased
T2448 2295-2297 IN denotes in
T2449 2298-2300 NN denotes CF
T2450 2301-2305 NNS denotes mice
T2451 2306-2308 IN denotes on
T2452 2309-2312 DT denotes the
T2453 2316-2326 NN denotes background
T2454 2313-2315 NN denotes B6
T2455 2327-2335 VBN denotes compared
T2456 2336-2338 IN denotes to
T2457 2339-2343 JJ denotes wild
T2458 2344-2348 NN denotes type
T2459 2348-2350 , denotes ,
T2460 2350-2353 CC denotes and
T2461 2354-2356 IN denotes on
T2462 2378-2381 VBD denotes was
T2463 2357-2360 DT denotes the
T2464 2367-2377 NN denotes background
T2465 2361-2366 JJ denotes mixed
T2466 2382-2386 RB denotes only
T2467 2387-2395 RB denotes 1.5-fold
T2468 2396-2403 JJR denotes greater
T2469 2404-2408 IN denotes than
T2470 2409-2413 JJ denotes wild
T2471 2414-2418 NN denotes type
T2472 2418-2420 , denotes ,
T2473 2420-2423 CC denotes and
T2474 2424-2427 DT denotes the
T2475 2428-2438 NN denotes difference
T2476 2439-2442 VBD denotes was
T2477 2443-2446 RB denotes not
T2478 2447-2458 JJ denotes significant
T2479 2459-2460 -LRB- denotes (
T2480 2460-2464 NN denotes Fig.
T2481 2465-2467 CD denotes 2D
T2482 2467-2468 -RRB- denotes )
T2483 2468-2469 . denotes .
T2484 2469-2667 sentence denotes Muclin is overexpressed almost 3-fold in the CF intestine on the B6 background, but on the mixed background the expression level in CF mice was not significantly different than wild type (Fig. 2E).
T2485 2470-2476 NN denotes Muclin
T2486 2480-2493 VBN denotes overexpressed
T2487 2477-2479 VBZ denotes is
T2488 2494-2500 RB denotes almost
T2489 2501-2507 RB denotes 3-fold
T2490 2508-2510 IN denotes in
T2491 2511-2514 DT denotes the
T2492 2518-2527 NN denotes intestine
T2493 2515-2517 NN denotes CF
T2494 2528-2530 IN denotes on
T2495 2531-2534 DT denotes the
T2496 2538-2548 NN denotes background
T2497 2535-2537 NN denotes B6
T2498 2548-2550 , denotes ,
T2542 2760-2763 DT denotes the
T2543 2770-2780 NN denotes background
T2544 2764-2769 JJ denotes mixed
T2545 2781-2784 DT denotes the
T2546 2799-2804 NN denotes level
T2547 2785-2787 NN denotes CF
T2548 2788-2798 NN denotes expression
T2549 2809-2812 RB denotes not
T2550 2813-2826 RB denotes statistically
T2551 2827-2836 JJ denotes different
T2552 2837-2841 IN denotes from
T2553 2842-2846 JJ denotes wild
T2554 2847-2851 NN denotes type
T2555 2852-2853 -LRB- denotes (
T2556 2853-2857 NN denotes Fig.
T2557 2858-2860 CD denotes 2F
T2558 2860-2861 -RRB- denotes )
T2559 2861-2862 . denotes .
T2560 2862-3753 sentence denotes Figure 2 Effect of genetic background on inflammatory gene expression in CF mouse small intestine. RNA expression levels were determined by quantitative real-time RT-PCR using gene-specific primers. Data are expressed relative to GAPDH mRNA, which does not vary between wild type and CF mice. Data are means ± SEM. (*) CF vs wild type on the B6 background, P < 0.005; (+) CF on the mixed background vs CF on the B6 background, P < 0.05 by ANOVA with a post-hoc Tukey's test. There were no significant differences for any of the 6 genes comparing: wild type B6 mice vs wild type mixed background; or CF mice on the mixed background vs wild type on either background. There were 8–11 samples analyzed per group for each gene. Because of the gender differences in body weight, the gene expression data were analyzed by gender but there was no significant difference between females and males.
T2561 3588-3595 IN denotes Because
T2562 3668-3676 VBN denotes analyzed
T2563 3596-3598 IN denotes of
T2564 3599-3602 DT denotes the
T2565 3610-3621 NNS denotes differences
T2566 3603-3609 NN denotes gender
T2567 3622-3624 IN denotes in
T2568 3625-3629 NN denotes body
T2569 3630-3636 NN denotes weight
T2570 3636-3638 , denotes ,
T2571 3638-3641 DT denotes the
T2572 3658-3662 NNS denotes data
T2573 3642-3646 NN denotes gene
T2574 3647-3657 NN denotes expression
T2575 3663-3667 VBD denotes were
T2576 3677-3679 IN denotes by
T2577 3680-3686 NN denotes gender
T2578 3687-3690 CC denotes but
T2579 3691-3696 EX denotes there
T2580 3697-3700 VBD denotes was
T2581 3701-3703 DT denotes no
T2582 3716-3726 NN denotes difference
T2583 3704-3715 JJ denotes significant
T2584 3727-3734 IN denotes between
T2585 3735-3742 NNS denotes females
T2586 3743-3746 CC denotes and
T2587 3747-3752 NNS denotes males
T2588 3752-3753 . denotes .
T2589 3753-3832 sentence denotes With the limited number of animals, there was also no evidence for imprinting.
T2590 3754-3758 IN denotes With
T2591 3796-3799 VBD denotes was
T2592 3759-3762 DT denotes the
T2593 3771-3777 NN denotes number
T2594 3763-3770 JJ denotes limited
T2595 3778-3780 IN denotes of
T2596 3781-3788 NNS denotes animals
T2597 3788-3790 , denotes ,
T2598 3790-3795 EX denotes there
T2599 3800-3804 RB denotes also
T2600 3805-3807 DT denotes no
T2601 3808-3816 NN denotes evidence
T2602 3817-3820 IN denotes for
T2603 3821-3831 NN denotes imprinting
T2604 3831-3832 . denotes .
T6751 2873-2879 NN denotes Effect
T6752 2880-2882 IN denotes of
T6753 2883-2890 JJ denotes genetic
T6754 2891-2901 NN denotes background
T6755 2902-2904 IN denotes on
T6756 2905-2917 JJ denotes inflammatory
T6757 2923-2933 NN denotes expression
T6758 2918-2922 NN denotes gene
T6759 2934-2936 IN denotes in
T6760 2937-2939 NN denotes CF
T6761 2940-2945 NN denotes mouse
T6762 2952-2961 NN denotes intestine
T6763 2946-2951 JJ denotes small
T6764 2961-2962 . denotes .
T6765 2962-3062 sentence denotes RNA expression levels were determined by quantitative real-time RT-PCR using gene-specific primers.
T6766 2963-2966 NN denotes RNA
T6767 2978-2984 NNS denotes levels
T6768 2967-2977 NN denotes expression
T6769 2990-3000 VBN denotes determined
T6770 2985-2989 VBD denotes were
T6771 3001-3003 IN denotes by
T6772 3004-3016 JJ denotes quantitative
T6773 3030-3033 NN denotes PCR
T6774 3017-3021 JJ denotes real
T6775 3022-3026 NN denotes time
T6776 3021-3022 HYPH denotes -
T6777 3027-3029 NN denotes RT
T6778 3029-3030 HYPH denotes -
T6779 3034-3039 VBG denotes using
T6780 3040-3044 NN denotes gene
T6781 3045-3053 JJ denotes specific
T6782 3044-3045 HYPH denotes -
T6783 3054-3061 NNS denotes primers
T6784 3061-3062 . denotes .
T6785 3062-3156 sentence denotes Data are expressed relative to GAPDH mRNA, which does not vary between wild type and CF mice.
T6786 3063-3067 NNS denotes Data
T6787 3072-3081 VBN denotes expressed
T6788 3068-3071 VBP denotes are
T6789 3082-3090 JJ denotes relative
T6790 3091-3093 IN denotes to
T6791 3094-3099 NN denotes GAPDH
T6792 3100-3104 NN denotes mRNA
T6793 3104-3106 , denotes ,
T6794 3106-3111 WDT denotes which
T6795 3121-3125 VB denotes vary
T6796 3112-3116 VBZ denotes does
T6797 3117-3120 RB denotes not
T6798 3126-3133 IN denotes between
T6799 3134-3138 JJ denotes wild
T6800 3139-3143 NN denotes type
T6801 3151-3155 NNS denotes mice
T6802 3144-3147 CC denotes and
T6803 3148-3150 NN denotes CF
T6804 3155-3156 . denotes .
T6805 3156-3178 sentence denotes Data are means ± SEM.
T6806 3157-3161 NNS denotes Data
T6807 3162-3165 VBP denotes are
T6808 3166-3171 NNS denotes means
T6809 3174-3177 NN denotes SEM
T6810 3172-3173 SYM denotes ±
T6811 3177-3178 . denotes .
T6812 3178-3338 sentence denotes (*) CF vs wild type on the B6 background, P < 0.005; (+) CF on the mixed background vs CF on the B6 background, P < 0.05 by ANOVA with a post-hoc Tukey's test.
T6813 3179-3180 -LRB- denotes (
T6814 3180-3181 LS denotes *
T6815 3225-3230 CD denotes 0.005
T6816 3181-3182 -RRB- denotes )
T6817 3183-3185 NN denotes CF
T6818 3186-3188 CC denotes vs
T6819 3189-3193 JJ denotes wild
T6820 3194-3198 NN denotes type
T6821 3199-3201 IN denotes on
T6822 3202-3205 DT denotes the
T6823 3209-3219 NN denotes background
T6824 3206-3208 NN denotes B6
T6825 3219-3221 , denotes ,
T6826 3221-3222 NN denotes P
T6827 3223-3224 SYM denotes <
T6828 3236-3238 NN denotes CF
T6829 3230-3231 : denotes ;
T6830 3232-3233 -LRB- denotes (
T6831 3233-3234 LS denotes +
T6832 3234-3235 -RRB- denotes )
T6833 3239-3241 IN denotes on
T6834 3242-3245 DT denotes the
T6835 3252-3262 NN denotes background
T6836 3246-3251 JJ denotes mixed
T6837 3263-3265 CC denotes vs
T6838 3266-3268 NN denotes CF
T6839 3269-3271 IN denotes on
T6840 3272-3275 DT denotes the
T6841 3279-3289 NN denotes background
T6842 3276-3278 NN denotes B6
T6843 3289-3291 , denotes ,
T6844 3291-3292 NN denotes P
T6845 3295-3299 CD denotes 0.05
T6846 3293-3294 SYM denotes <
T6847 3300-3302 IN denotes by
T6848 3303-3308 NN denotes ANOVA
T6849 3309-3313 IN denotes with
T6850 3314-3315 DT denotes a
T6851 3333-3337 NN denotes test
T6852 3316-3324 JJ denotes post-hoc
T6853 3325-3330 NNP denotes Tukey
T6854 3330-3332 POS denotes 's
T6855 3337-3338 . denotes .
T6856 3338-3529 sentence denotes There were no significant differences for any of the 6 genes comparing: wild type B6 mice vs wild type mixed background; or CF mice on the mixed background vs wild type on either background.
T6857 3339-3344 EX denotes There
T6858 3345-3349 VBD denotes were
T6859 3350-3352 DT denotes no
T6860 3365-3376 NNS denotes differences
T6861 3353-3364 JJ denotes significant
T6862 3377-3380 IN denotes for
T6863 3381-3384 DT denotes any
T6864 3385-3387 IN denotes of
T6865 3388-3391 DT denotes the
T6866 3394-3399 NNS denotes genes
T6867 3392-3393 CD denotes 6
T6868 3400-3409 VBG denotes comparing
T6869 3409-3411 : denotes :
T6870 3411-3415 JJ denotes wild
T6871 3416-3420 NN denotes type
T6872 3424-3428 NNS denotes mice
T6873 3421-3423 NN denotes B6
T6874 3429-3431 CC denotes vs
T6875 3432-3436 JJ denotes wild
T6876 3437-3441 NN denotes type
T6877 3448-3458 NN denotes background
T6878 3442-3447 JJ denotes mixed
T6879 3458-3459 : denotes ;
T6880 3460-3462 CC denotes or
T6881 3463-3465 NN denotes CF
T6882 3466-3470 NNS denotes mice
T6883 3471-3473 IN denotes on
T6884 3474-3477 DT denotes the
T6885 3484-3494 NN denotes background
T6886 3478-3483 JJ denotes mixed
T6887 3495-3497 CC denotes vs
T6888 3498-3502 JJ denotes wild
T6889 3503-3507 NN denotes type
T6890 3508-3510 IN denotes on
T6891 3511-3517 DT denotes either
T6892 3518-3528 NN denotes background
T6893 3528-3529 . denotes .
T6894 3529-3587 sentence denotes There were 8–11 samples analyzed per group for each gene.
T6895 3530-3535 EX denotes There
T6896 3536-3540 VBD denotes were
T6897 3541-3542 CD denotes 8
T6898 3543-3545 CD denotes 11
T6899 3542-3543 SYM denotes –
T6900 3546-3553 NNS denotes samples
T6901 3554-3562 VBN denotes analyzed
T6902 3563-3566 IN denotes per
T6903 3567-3572 NN denotes group
T6904 3573-3576 IN denotes for
T6905 3577-3581 DT denotes each
T6906 3582-3586 NN denotes gene
T6907 3586-3587 . denotes .
T2536 2742-2746 JJ denotes wild
T2537 2747-2751 NN denotes type
T2538 2751-2753 , denotes ,
T2539 2753-2756 CC denotes and
T2540 2757-2759 IN denotes on
T2541 2805-2808 VBD denotes was
T2499 2550-2553 CC denotes but
T2500 2554-2556 IN denotes on
T2501 2610-2613 VBD denotes was
T2502 2557-2560 DT denotes the
T2503 2567-2577 NN denotes background
T2504 2561-2566 JJ denotes mixed
T2505 2578-2581 DT denotes the
T2506 2593-2598 NN denotes level
T2507 2582-2592 NN denotes expression
T2508 2599-2601 IN denotes in
T2509 2602-2604 NN denotes CF
T2510 2605-2609 NNS denotes mice
T2511 2614-2617 RB denotes not
T2512 2618-2631 RB denotes significantly
T2513 2632-2641 JJ denotes different
T2514 2642-2646 IN denotes than
T2515 2647-2651 JJ denotes wild
T2516 2652-2656 NN denotes type
T2517 2657-2658 -LRB- denotes (
T2518 2658-2662 NN denotes Fig.
T2519 2663-2665 CD denotes 2E
T2520 2665-2666 -RRB- denotes )
T2521 2666-2667 . denotes .
T2522 2667-2862 sentence denotes Finally, HemT1 was overexpressed almost 20-fold in B6 CF mice compared to wild type, and on the mixed background the CF expression level was not statistically different from wild type (Fig. 2F).
T2523 2668-2675 RB denotes Finally
T2524 2687-2700 VBN denotes overexpressed
T2525 2675-2677 , denotes ,
T2526 2677-2682 NN denotes HemT1
T2527 2683-2686 VBD denotes was
T2528 2701-2707 RB denotes almost
T2529 2708-2715 RB denotes 20-fold
T2530 2716-2718 IN denotes in
T2531 2719-2721 NN denotes B6
T2532 2725-2729 NNS denotes mice
T2533 2722-2724 NN denotes CF
T2534 2730-2738 VBN denotes compared
T2535 2739-2741 IN denotes to
R1146 T1974 T1975 compound CF,mice
R1147 T1975 T1976 nsubj mice,have
R1148 T1977 T1975 prep on,mice
R1149 T1978 T1979 det the,background
R1150 T1979 T1977 pobj background,on
R1151 T1980 T1979 amod mixed,background
R1152 T1981 T1982 amod reduced,expression
R1153 T1982 T1976 dobj expression,have
R1154 T1983 T1982 prep of,expression
R1155 T1984 T1985 amod inflammatory,markers
R1156 T1985 T1983 pobj markers,of
R1157 T1987 T1988 amod Previous,work
R1158 T1988 T1989 nsubj work,showed
R1159 T1990 T1991 mark that,have
R1160 T1991 T1989 ccomp have,showed
R1161 T1992 T1993 compound CF,mice
R1162 T1993 T1991 nsubj mice,have
R1163 T1994 T1993 prep on,mice
R1164 T1995 T1996 det the,background
R1165 T1996 T1994 pobj background,on
R1166 T1997 T1996 compound B6,background
R1167 T1998 T1999 det an,inflammation
R1168 T1999 T1991 dobj inflammation,have
R1169 T2000 T2001 amod innate,type
R1170 T2001 T1999 compound type,inflammation
R1171 T2002 T2001 punct -,type
R1172 T2003 T1999 prep of,inflammation
R1173 T2004 T2005 det the,intestine
R1174 T2005 T2003 pobj intestine,of
R1175 T2006 T2005 amod small,intestine
R1176 T2007 T2008 punct [,21
R1177 T2008 T1989 parataxis 21,showed
R1178 T2009 T2008 punct ],21
R1179 T2010 T1989 punct .,showed
R1180 T2012 T2013 aux To,determine
R1181 T2013 T2014 advcl determine,used
R1182 T2015 T2016 mark whether,affected
R1183 T2016 T2013 ccomp affected,determine
R1184 T2017 T2018 det the,background
R1185 T2018 T2016 nsubj background,affected
R1186 T2019 T2018 amod mixed,background
R1187 T2020 T2018 amod genetic,background
R1188 T2021 T2016 dobj expression,affected
R1189 T2022 T2021 prep of,expression
R1190 T2023 T2024 amod inflammatory,genes
R1191 T2024 T2022 pobj genes,of
R1192 T2025 T2024 compound marker,genes
R1193 T2026 T2014 punct ", ",used
R1194 T2027 T2028 amod quantitative,PCR
R1195 T2028 T2014 nsubjpass PCR,used
R1196 T2029 T2028 punct ", ",PCR
R1197 T2030 T2031 amod real,time
R1198 T2031 T2028 compound time,PCR
R1199 T2032 T2031 punct -,time
R1200 T2033 T2028 compound RT,PCR
R1201 T2034 T2028 punct -,PCR
R1202 T2035 T2014 auxpass was,used
R1203 T2036 T2037 aux to,measure
R1204 T2037 T2014 advcl measure,used
R1205 T2038 T2039 compound gene,expression
R1206 T2039 T2037 dobj expression,measure
R1207 T2040 T2014 punct .,used
R1208 T2042 T2043 nsubjpass Expression,compared
R1209 T2044 T2042 prep of,Expression
R1210 T2045 T2046 det the,genes
R1211 T2046 T2044 pobj genes,of
R1212 T2047 T2046 amod following,genes
R1213 T2048 T2043 auxpass was,compared
R1214 T2049 T2043 prep in,compared
R1215 T2050 T2051 amod wild,type
R1216 T2051 T2052 nmod type,mice
R1217 T2052 T2049 pobj mice,in
R1218 T2053 T2051 cc and,type
R1219 T2054 T2051 conj CF,type
R1220 T2055 T2052 prep on,mice
R1221 T2056 T2057 det the,backgrounds
R1222 T2057 T2055 pobj backgrounds,on
R1223 T2058 T2057 amod different,backgrounds
R1224 T2059 T2057 amod genetic,backgrounds
R1225 T2060 T2043 punct .,compared
R1226 T2062 T2063 compound Mast,protease
R1227 T2063 T2065 nsubj protease,is
R1228 T2064 T2063 compound cell,protease
R1229 T2066 T2063 nummod 2,protease
R1230 T2067 T2063 punct (,protease
R1231 T2068 T2063 appos Mcpt2,protease
R1232 T2069 T2065 punct ),is
R1233 T2070 T2071 det a,marker
R1234 T2071 T2065 attr marker,is
R1235 T2072 T2071 prep of,marker
R1236 T2073 T2074 amod differentiated,cells
R1237 T2074 T2072 pobj cells,of
R1238 T2075 T2074 compound mast,cells
R1239 T2076 T2077 punct [,22
R1240 T2077 T2065 parataxis 22,is
R1241 T2078 T2077 punct ],22
R1242 T2079 T2065 cc and,is
R1243 T2080 T2081 compound mast,cells
R1244 T2081 T2082 nsubj cells,are
R1245 T2082 T2065 conj are,is
R1246 T2083 T2084 advmod more,abundant
R1247 T2084 T2082 acomp abundant,are
R1248 T2085 T2082 prep in,are
R1249 T2086 T2087 det the,intestine
R1250 T2087 T2085 pobj intestine,in
R1251 T2088 T2087 compound B6,intestine
R1252 T2089 T2087 compound CF,intestine
R1253 T2090 T2087 compound mouse,intestine
R1254 T2091 T2082 punct .,are
R1255 T2093 T2094 nmod Leucine,glycoprotein
R1256 T2094 T2098 nsubj glycoprotein,is
R1257 T2095 T2093 punct -,Leucine
R1258 T2096 T2093 amod rich,Leucine
R1259 T2097 T2094 compound α2,glycoprotein
R1260 T2099 T2094 punct (,glycoprotein
R1261 T2100 T2094 appos Lrg1,glycoprotein
R1262 T2101 T2094 punct ", ",glycoprotein
R1263 T2102 T2103 punct [,23
R1264 T2103 T2094 parataxis 23,glycoprotein
R1265 T2104 T2103 punct ],23
R1266 T2105 T2098 punct ),is
R1267 T2106 T2107 det a,marker
R1268 T2107 T2098 attr marker,is
R1269 T2108 T2107 prep of,marker
R1270 T2109 T2110 amod differentiating,neutrophils
R1271 T2110 T2108 pobj neutrophils,of
R1272 T2111 T2110 punct ", ",neutrophils
R1273 T2112 T2113 dep which,are
R1274 T2113 T2110 relcl are,neutrophils
R1275 T2114 T2115 advmod more,numerous
R1276 T2115 T2113 acomp numerous,are
R1277 T2116 T2113 prep in,are
R1278 T2117 T2118 det the,intestine
R1279 T2118 T2116 pobj intestine,in
R1280 T2119 T2120 compound B6,mouse
R1281 T2120 T2118 compound mouse,intestine
R1282 T2121 T2120 compound CF,mouse
R1283 T2122 T2098 punct .,is
R1284 T2124 T2125 det The,gene
R1285 T2125 T2127 nsubjpass gene,known
R1286 T2126 T2125 amod same,gene
R1287 T2128 T2127 auxpass is,known
R1288 T2129 T2127 advmod also,known
R1289 T2130 T2127 prep as,known
R1290 T2131 T2132 npadvmod leucine,rich
R1291 T2132 T2134 amod rich,glycoprotein
R1292 T2133 T2132 punct -,rich
R1293 T2134 T2130 pobj glycoprotein,as
R1294 T2135 T2134 amod high,glycoprotein
R1295 T2136 T2134 amod endothelial,glycoprotein
R1296 T2137 T2134 compound cell,glycoprotein
R1297 T2138 T2134 punct (,glycoprotein
R1298 T2139 T2134 appos Lrhg,glycoprotein
R1299 T2140 T2127 punct ),known
R1300 T2141 T2127 cc and,known
R1301 T2142 T2143 aux has,shown
R1302 T2143 T2127 conj shown,known
R1303 T2144 T2143 auxpass been,shown
R1304 T2145 T2146 aux to,be
R1305 T2146 T2143 xcomp be,shown
R1306 T2147 T2148 det a,marker
R1307 T2148 T2146 attr marker,be
R1308 T2149 T2148 prep of,marker
R1309 T2150 T2151 amod high,venules
R1310 T2151 T2149 pobj venules,of
R1311 T2152 T2151 amod endothelial,venules
R1312 T2153 T2151 punct (,venules
R1313 T2154 T2151 appos HEV,venules
R1314 T2155 T2148 punct ),marker
R1315 T2156 T2157 punct [,24
R1316 T2157 T2148 parataxis 24,marker
R1317 T2158 T2157 punct ],24
R1318 T2159 T2160 dep which,increase
R1319 T2160 T2148 relcl increase,marker
R1320 T2161 T2160 prep in,increase
R1321 T2162 T2161 pobj tissues,in
R1322 T2163 T2160 prep during,increase
R1323 T2164 T2163 pobj inflammation,during
R1324 T2165 T2166 punct [,26
R1325 T2166 T2143 parataxis 26,shown
R1326 T2167 T2166 nummod 25,26
R1327 T2168 T2166 punct ",",26
R1328 T2169 T2166 punct ],26
R1329 T2170 T2127 punct .,known
R1330 T2172 T2173 amod Hematopoietic,transcript
R1331 T2173 T2175 nsubj transcript,is
R1332 T2174 T2173 compound cell,transcript
R1333 T2176 T2173 nummod 1,transcript
R1334 T2177 T2173 punct (,transcript
R1335 T2178 T2173 appos HemT1,transcript
R1336 T2179 T2173 punct ", ",transcript
R1337 T2180 T2181 punct [,27
R1338 T2181 T2173 parataxis 27,transcript
R1339 T2182 T2181 punct ],27
R1340 T2183 T2173 punct ),transcript
R1341 T2184 T2185 det a,marker
R1342 T2185 T2175 attr marker,is
R1343 T2186 T2185 prep of,marker
R1344 T2187 T2188 compound blood,proliferation
R1345 T2188 T2186 pobj proliferation,of
R1346 T2189 T2188 compound cell,proliferation
R1347 T2190 T2175 cc and,is
R1348 T2191 T2192 poss its,expression
R1349 T2192 T2193 nsubj expression,is
R1350 T2193 T2175 conj is,is
R1351 T2194 T2195 advmod strongly,elevated
R1352 T2195 T2193 acomp elevated,is
R1353 T2196 T2193 prep in,is
R1354 T2197 T2198 det the,intestine
R1355 T2198 T2196 pobj intestine,in
R1356 T2199 T2200 nmod B6,mouse
R1357 T2200 T2198 nmod mouse,intestine
R1358 T2201 T2200 nmod CF,mouse
R1359 T2202 T2198 amod small,intestine
R1360 T2203 T2193 punct .,is
R1361 T2205 T2206 compound Serum,A3
R1362 T2206 T2208 nsubj A3,is
R1363 T2207 T2206 compound amyloid,A3
R1364 T2209 T2206 punct (,A3
R1365 T2210 T2206 appos SAA3,A3
R1366 T2211 T2206 punct ", ",A3
R1367 T2212 T2213 punct [,28
R1368 T2213 T2206 parataxis 28,A3
R1369 T2214 T2213 punct ],28
R1370 T2215 T2206 punct ),A3
R1371 T2216 T2217 det an,gene
R1372 T2217 T2208 attr gene,is
R1373 T2218 T2217 amod acute,gene
R1374 T2219 T2217 compound phase,gene
R1375 T2220 T2208 cc and,is
R1376 T2221 T2222 poss its,expression
R1377 T2222 T2223 nsubj expression,is
R1378 T2223 T2208 conj is,is
R1379 T2224 T2222 prep in,expression
R1380 T2225 T2226 nmod villus,cells
R1381 T2226 T2224 pobj cells,in
R1382 T2227 T2226 amod epithelial,cells
R1383 T2228 T2223 acomp increased,is
R1384 T2229 T2223 prep in,is
R1385 T2230 T2231 det the,intestine
R1386 T2231 T2229 pobj intestine,in
R1387 T2232 T2233 compound B6,CF
R1388 T2233 T2231 compound CF,intestine
R1389 T2234 T2223 punct .,is
R1390 T2236 T2237 nsubj Suppressor,is
R1391 T2238 T2236 prep of,Suppressor
R1392 T2239 T2240 compound cytokine,signaling
R1393 T2240 T2238 pobj signaling,of
R1394 T2241 T2240 nummod 3,signaling
R1395 T2242 T2240 punct (,signaling
R1396 T2243 T2240 appos SOCS3,signaling
R1397 T2244 T2240 punct ", ",signaling
R1398 T2245 T2246 punct [,29
R1399 T2246 T2240 parataxis 29,signaling
R1400 T2247 T2246 punct ],29
R1401 T2248 T2237 punct ),is
R1402 T2249 T2250 det an,gene
R1403 T2250 T2237 attr gene,is
R1404 T2251 T2250 amod anti-inflammatory,gene
R1405 T2252 T2253 dep that,interacts
R1406 T2253 T2250 relcl interacts,gene
R1407 T2254 T2253 prep with,interacts
R1408 T2255 T2256 det the,pathway
R1409 T2256 T2254 pobj pathway,with
R1410 T2257 T2258 compound JAK,STAT
R1411 T2258 T2256 compound STAT,pathway
R1412 T2259 T2258 punct -,STAT
R1413 T2260 T2237 cc and,is
R1414 T2261 T2262 poss its,expression
R1415 T2262 T2263 nsubj expression,in
R1416 T2263 T2237 conj in,is
R1417 T2264 T2263 acomp increased,in
R1418 T2265 T2263 prep in,in
R1419 T2266 T2267 det the,intestine
R1420 T2267 T2265 pobj intestine,in
R1421 T2268 T2269 compound B6,CF
R1422 T2269 T2267 compound CF,intestine
R1423 T2270 T2263 punct .,in
R1424 T2272 T2273 nmod Muclin,expression
R1425 T2273 T2284 nsubjpass expression,upregulated
R1426 T2274 T2275 punct (,known
R1427 T2275 T2273 parataxis known,expression
R1428 T2276 T2275 advmod also,known
R1429 T2277 T2275 prep as,known
R1430 T2278 T2277 pobj dmbt1,as
R1431 T2279 T2278 punct ", ",dmbt1
R1432 T2280 T2281 punct [,30
R1433 T2281 T2278 parataxis 30,dmbt1
R1434 T2282 T2281 punct ],30
R1435 T2283 T2275 punct ),known
R1436 T2284 T2286 ccomp upregulated,is
R1437 T2285 T2284 auxpass is,upregulated
R1438 T2287 T2284 prep in,upregulated
R1439 T2288 T2289 det the,intestine
R1440 T2289 T2287 pobj intestine,in
R1441 T2290 T2291 compound B6,CF
R1442 T2291 T2289 compound CF,intestine
R1443 T2292 T2286 punct ;,is
R1444 T2293 T2286 nsubj it,is
R1445 T2294 T2295 det a,glycoprotein
R1446 T2295 T2286 attr glycoprotein,is
R1447 T2296 T2295 compound cell,glycoprotein
R1448 T2297 T2295 compound surface,glycoprotein
R1449 T2298 T2295 acl postulated,glycoprotein
R1450 T2299 T2300 aux to,be
R1451 T2300 T2298 xcomp be,postulated
R1452 T2301 T2302 det an,molecule
R1453 T2302 T2300 attr molecule,be
R1454 T2303 T2302 amod epithelial,molecule
R1455 T2304 T2302 amod protective,molecule
R1456 T2305 T2306 punct [,31
R1457 T2306 T2286 parataxis 31,is
R1458 T2307 T2306 nummod 21,31
R1459 T2308 T2306 punct ",",31
R1460 T2309 T2306 punct ],31
R1461 T2310 T2286 punct .,is
R1462 T2312 T2313 advcl Consistent,increased
R1463 T2314 T2312 prep with,Consistent
R1464 T2315 T2316 amod previous,results
R1465 T2316 T2314 pobj results,with
R1466 T2317 T2313 punct ", ",increased
R1467 T2318 T2313 nsubjpass Mcpt2,increased
R1468 T2319 T2313 auxpass was,increased
R1469 T2320 T2313 prep in,increased
R1470 T2321 T2322 compound CF,mice
R1471 T2322 T2320 pobj mice,in
R1472 T2323 T2322 prep on,mice
R1473 T2324 T2325 det the,background
R1474 T2325 T2323 pobj background,on
R1475 T2326 T2325 compound B6,background
R1476 T2327 T2313 prep by,increased
R1477 T2328 T2329 quantmod over,9-fold
R1478 T2329 T2327 pcomp 9-fold,by
R1479 T2330 T2313 prep compared,increased
R1480 T2331 T2330 prep to,compared
R1481 T2332 T2333 amod wild,type
R1482 T2333 T2331 pobj type,to
R1483 T2334 T2335 punct (,Fig.
R1484 T2335 T2313 parataxis Fig.,increased
R1485 T2336 T2335 nummod 2A,Fig.
R1486 T2337 T2335 punct ),Fig.
R1487 T2338 T2313 punct .,increased
R1488 T2340 T2341 prep By,was
R1489 T2342 T2340 pobj contrast,By
R1490 T2343 T2341 punct ", ",was
R1491 T2344 T2341 expl there,was
R1492 T2345 T2341 neg not,was
R1493 T2346 T2347 det a,difference
R1494 T2347 T2341 attr difference,was
R1495 T2348 T2347 amod significant,difference
R1496 T2349 T2347 prep in,difference
R1497 T2350 T2351 compound Mcpt2,expression
R1498 T2351 T2349 pobj expression,in
R1499 T2352 T2351 prep between,expression
R1500 T2353 T2352 pobj CF,between
R1501 T2354 T2353 cc and,CF
R1502 T2355 T2356 amod wild,type
R1503 T2356 T2353 conj type,CF
R1504 T2357 T2353 prep on,CF
R1505 T2358 T2359 det the,background
R1506 T2359 T2357 pobj background,on
R1507 T2360 T2359 amod mixed,background
R1508 T2361 T2362 punct (,Fig.
R1509 T2362 T2341 parataxis Fig.,was
R1510 T2363 T2362 nummod 2A,Fig.
R1511 T2364 T2362 punct ),Fig.
R1512 T2365 T2341 punct .,was
R1513 T2367 T2368 compound Lrg1,Lrhg
R1514 T2368 T2370 compound Lrhg,expression
R1515 T2369 T2368 punct /,Lrhg
R1516 T2370 T2371 nsubjpass expression,increased
R1517 T2372 T2371 auxpass was,increased
R1518 T2373 T2374 advmod more,20-fold
R1519 T2374 T2371 advmod 20-fold,increased
R1520 T2375 T2374 quantmod than,20-fold
R1521 T2376 T2371 prep in,increased
R1522 T2377 T2378 compound CF,mice
R1523 T2378 T2376 pobj mice,in
R1524 T2379 T2378 prep on,mice
R1525 T2380 T2381 det the,background
R1526 T2381 T2379 pobj background,on
R1527 T2382 T2381 compound B6,background
R1528 T2383 T2371 prep compared,increased
R1529 T2384 T2383 prep to,compared
R1530 T2385 T2386 amod wild,type
R1531 T2386 T2384 pobj type,to
R1532 T2387 T2371 punct ", ",increased
R1533 T2388 T2371 cc but,increased
R1534 T2389 T2390 expl there,was
R1535 T2390 T2371 conj was,increased
R1536 T2391 T2392 det no,difference
R1537 T2392 T2390 attr difference,was
R1538 T2393 T2392 amod significant,difference
R1539 T2394 T2392 prep between,difference
R1540 T2395 T2394 pobj CF,between
R1541 T2396 T2395 cc and,CF
R1542 T2397 T2398 amod wild,type
R1543 T2398 T2395 conj type,CF
R1544 T2399 T2395 prep on,CF
R1545 T2400 T2401 det the,background
R1546 T2401 T2399 pobj background,on
R1547 T2402 T2401 amod mixed,background
R1548 T2403 T2404 punct (,Fig.
R1549 T2404 T2390 parataxis Fig.,was
R1550 T2405 T2404 nummod 2B,Fig.
R1551 T2406 T2404 punct ),Fig.
R1552 T2407 T2390 punct .,was
R1553 T2409 T2410 compound SAA3,mRNA
R1554 T2410 T2411 nsubj mRNA,was
R1555 T2412 T2413 quantmod about,3.5-fold
R1556 T2413 T2414 advmod 3.5-fold,increased
R1557 T2414 T2411 acomp increased,was
R1558 T2415 T2411 prep in,was
R1559 T2416 T2417 compound CF,mice
R1560 T2417 T2415 pobj mice,in
R1561 T2418 T2417 prep on,mice
R1562 T2419 T2420 det the,background
R1563 T2420 T2418 pobj background,on
R1564 T2421 T2420 compound B6,background
R1565 T2422 T2411 punct ", ",was
R1566 T2423 T2411 cc but,was
R1567 T2424 T2411 conj was,was
R1568 T2425 T2424 neg not,was
R1569 T2426 T2427 advmod significantly,different
R1570 T2427 T2424 acomp different,was
R1571 T2428 T2424 prep compared,was
R1572 T2429 T2428 prep to,compared
R1573 T2430 T2431 amod wild,type
R1574 T2431 T2429 pobj type,to
R1575 T2432 T2431 prep on,type
R1576 T2433 T2434 det the,background
R1577 T2434 T2432 pobj background,on
R1578 T2435 T2434 amod mixed,background
R1579 T2436 T2437 punct (,Fig.
R1580 T2437 T2424 parataxis Fig.,was
R1581 T2438 T2437 nummod 2C,Fig.
R1582 T2439 T2437 punct ),Fig.
R1583 T2440 T2411 punct .,was
R1584 T2442 T2443 nsubj SOCS3,was
R1585 T2444 T2445 amod more,2-fold
R1586 T2445 T2447 advmod 2-fold,increased
R1587 T2446 T2445 quantmod than,2-fold
R1588 T2447 T2443 acomp increased,was
R1589 T2448 T2443 prep in,was
R1590 T2449 T2450 compound CF,mice
R1591 T2450 T2448 pobj mice,in
R1592 T2451 T2450 prep on,mice
R1593 T2452 T2453 det the,background
R1594 T2453 T2451 pobj background,on
R1595 T2454 T2453 compound B6,background
R1596 T2455 T2443 prep compared,was
R1597 T2456 T2455 prep to,compared
R1598 T2457 T2458 amod wild,type
R1599 T2458 T2456 pobj type,to
R1600 T2459 T2443 punct ", ",was
R1601 T2460 T2443 cc and,was
R1602 T2461 T2462 prep on,was
R1603 T2462 T2443 conj was,was
R1604 T2463 T2464 det the,background
R1605 T2464 T2461 pobj background,on
R1606 T2465 T2464 amod mixed,background
R1607 T2466 T2467 advmod only,1.5-fold
R1608 T2467 T2468 advmod 1.5-fold,greater
R1609 T2468 T2462 acomp greater,was
R1610 T2469 T2468 prep than,greater
R1611 T2470 T2471 amod wild,type
R1612 T2471 T2469 pobj type,than
R1613 T2472 T2443 punct ", ",was
R1614 T2473 T2443 cc and,was
R1615 T2474 T2475 det the,difference
R1616 T2475 T2476 nsubj difference,was
R1617 T2476 T2443 conj was,was
R1618 T2477 T2476 neg not,was
R1619 T2478 T2476 acomp significant,was
R1620 T2479 T2480 punct (,Fig.
R1621 T2480 T2476 parataxis Fig.,was
R1622 T2481 T2480 nummod 2D,Fig.
R1623 T2482 T2480 punct ),Fig.
R1624 T2483 T2476 punct .,was
R1625 T2485 T2486 nsubjpass Muclin,overexpressed
R1626 T2487 T2486 auxpass is,overexpressed
R1627 T2488 T2489 advmod almost,3-fold
R1628 T2489 T2486 advmod 3-fold,overexpressed
R1629 T2490 T2486 prep in,overexpressed
R1630 T2491 T2492 det the,intestine
R1631 T2492 T2490 pobj intestine,in
R1632 T2493 T2492 compound CF,intestine
R1633 T2494 T2492 prep on,intestine
R1634 T2495 T2496 det the,background
R1635 T2496 T2494 pobj background,on
R1636 T2497 T2496 compound B6,background
R1637 T2498 T2486 punct ", ",overexpressed
R1638 T2499 T2486 cc but,overexpressed
R1639 T2500 T2501 prep on,was
R1640 T2501 T2486 conj was,overexpressed
R1641 T2502 T2503 det the,background
R1642 T2503 T2500 pobj background,on
R1643 T2504 T2503 amod mixed,background
R1644 T2505 T2506 det the,level
R1645 T2506 T2501 nsubj level,was
R1646 T2507 T2506 compound expression,level
R1647 T2508 T2506 prep in,level
R1648 T2509 T2510 compound CF,mice
R1649 T2510 T2508 pobj mice,in
R1650 T2511 T2501 neg not,was
R1651 T2512 T2513 advmod significantly,different
R1652 T2513 T2501 acomp different,was
R1653 T2514 T2513 prep than,different
R1654 T2515 T2516 amod wild,type
R1655 T2516 T2514 pobj type,than
R1656 T2517 T2518 punct (,Fig.
R1657 T2518 T2501 parataxis Fig.,was
R1658 T2519 T2518 nummod 2E,Fig.
R1659 T2520 T2518 punct ),Fig.
R1660 T2521 T2501 punct .,was
R1661 T2523 T2524 advmod Finally,overexpressed
R1662 T2525 T2524 punct ", ",overexpressed
R1663 T2526 T2524 nsubjpass HemT1,overexpressed
R1664 T2527 T2524 auxpass was,overexpressed
R1697 T2561 T2562 prep Because,analyzed
R1698 T2563 T2561 pcomp of,Because
R1699 T2564 T2565 det the,differences
R1700 T2565 T2561 pobj differences,Because
R1701 T2566 T2565 compound gender,differences
R1702 T2567 T2565 prep in,differences
R1703 T2568 T2569 compound body,weight
R1704 T2569 T2567 pobj weight,in
R1705 T2570 T2562 punct ", ",analyzed
R1706 T2571 T2572 det the,data
R1707 T2572 T2562 nsubjpass data,analyzed
R1708 T2573 T2574 compound gene,expression
R1709 T2574 T2572 compound expression,data
R1710 T2575 T2562 auxpass were,analyzed
R1711 T2576 T2562 prep by,analyzed
R1712 T2577 T2576 pobj gender,by
R1713 T2578 T2562 cc but,analyzed
R1714 T2579 T2580 expl there,was
R1715 T2580 T2562 conj was,analyzed
R1716 T2581 T2582 det no,difference
R1717 T2582 T2580 attr difference,was
R1718 T2583 T2582 amod significant,difference
R1719 T2584 T2582 prep between,difference
R1720 T2585 T2584 pobj females,between
R1721 T2586 T2585 cc and,females
R1722 T2587 T2585 conj males,females
R1723 T2588 T2580 punct .,was
R1724 T2590 T2591 prep With,was
R1725 T2592 T2593 det the,number
R1726 T2593 T2590 pobj number,With
R1727 T2594 T2593 amod limited,number
R1728 T2595 T2593 prep of,number
R1729 T2596 T2595 pobj animals,of
R1730 T2597 T2591 punct ", ",was
R1731 T2598 T2591 expl there,was
R1732 T2599 T2591 advmod also,was
R1733 T2600 T2601 det no,evidence
R1734 T2601 T2591 attr evidence,was
R1735 T2602 T2601 prep for,evidence
R1736 T2603 T2602 pobj imprinting,for
R1737 T2604 T2591 punct .,was
R4516 T6752 T6751 prep of,Effect
R4517 T6753 T6754 amod genetic,background
R4518 T6754 T6752 pobj background,of
R4519 T6755 T6751 prep on,Effect
R4520 T6756 T6757 amod inflammatory,expression
R4521 T6757 T6755 pobj expression,on
R4522 T6758 T6757 compound gene,expression
R4523 T6759 T6751 prep in,Effect
R4524 T6760 T6761 nmod CF,mouse
R4525 T6761 T6762 nmod mouse,intestine
R4526 T6762 T6759 pobj intestine,in
R4527 T6763 T6762 amod small,intestine
R4528 T6764 T6751 punct .,Effect
R4529 T6766 T6767 compound RNA,levels
R4530 T6767 T6769 nsubjpass levels,determined
R4531 T6768 T6767 compound expression,levels
R4532 T6770 T6769 auxpass were,determined
R4533 T6771 T6769 prep by,determined
R4534 T6772 T6773 amod quantitative,PCR
R4535 T6773 T6771 pobj PCR,by
R4536 T6774 T6775 amod real,time
R4537 T6775 T6773 compound time,PCR
R4538 T6776 T6775 punct -,time
R4539 T6777 T6773 compound RT,PCR
R4540 T6778 T6773 punct -,PCR
R4541 T6779 T6769 advcl using,determined
R4542 T6780 T6781 npadvmod gene,specific
R4543 T6781 T6783 amod specific,primers
R4544 T6782 T6781 punct -,specific
R4545 T6783 T6779 dobj primers,using
R4546 T6784 T6769 punct .,determined
R4547 T6786 T6787 nsubjpass Data,expressed
R4548 T6788 T6787 auxpass are,expressed
R4549 T6789 T6787 advcl relative,expressed
R4550 T6790 T6789 prep to,relative
R4551 T6791 T6792 compound GAPDH,mRNA
R4552 T6792 T6790 pobj mRNA,to
R4553 T6793 T6792 punct ", ",mRNA
R4554 T6794 T6795 dep which,vary
R4555 T6795 T6792 relcl vary,mRNA
R4556 T6796 T6795 aux does,vary
R4557 T6797 T6795 neg not,vary
R4558 T6798 T6795 prep between,vary
R4559 T6799 T6800 amod wild,type
R4560 T6800 T6801 nmod type,mice
R4561 T6801 T6798 pobj mice,between
R4562 T6802 T6800 cc and,type
R4563 T6803 T6800 conj CF,type
R4564 T6804 T6787 punct .,expressed
R4565 T6806 T6807 nsubj Data,are
R4566 T6808 T6809 nmod means,SEM
R4567 T6809 T6807 attr SEM,are
R4568 T6810 T6809 punct ±,SEM
R4569 T6811 T6807 punct .,are
R4570 T6813 T6814 punct (,*
R4571 T6814 T6815 meta *,0.005
R4572 T6815 T6828 dep 0.005,CF
R4573 T6816 T6814 punct ),*
R4574 T6817 T6815 dep CF,0.005
R4575 T6818 T6817 cc vs,CF
R4576 T6819 T6820 amod wild,type
R4577 T6820 T6817 conj type,CF
R4578 T6821 T6817 prep on,CF
R4579 T6822 T6823 det the,background
R4580 T6823 T6821 pobj background,on
R4581 T6824 T6823 compound B6,background
R4582 T6825 T6815 punct ", ",0.005
R4583 T6826 T6815 nsubj P,0.005
R4584 T6827 T6815 punct <,0.005
R4585 T6829 T6828 punct ;,CF
R4586 T6830 T6831 punct (,+
R4587 T6831 T6828 meta +,CF
R4588 T6832 T6831 punct ),+
R4589 T6833 T6828 prep on,CF
R4590 T6834 T6835 det the,background
R4591 T6835 T6833 pobj background,on
R4592 T6836 T6835 amod mixed,background
R4593 T6837 T6828 cc vs,CF
R4594 T6838 T6828 conj CF,CF
R4595 T6839 T6838 prep on,CF
R4596 T6840 T6841 det the,background
R4597 T6841 T6839 pobj background,on
R4598 T6842 T6841 compound B6,background
R4599 T6843 T6828 punct ", ",CF
R4600 T6844 T6845 nsubj P,0.05
R4601 T6845 T6828 dep 0.05,CF
R4602 T6846 T6845 punct <,0.05
R4603 T6847 T6845 prep by,0.05
R4604 T6848 T6847 pobj ANOVA,by
R4605 T6849 T6845 prep with,0.05
R4606 T6850 T6851 det a,test
R4607 T6851 T6849 pobj test,with
R4608 T6852 T6851 amod post-hoc,test
R4609 T6853 T6851 poss Tukey,test
R4610 T6854 T6853 case 's,Tukey
R4611 T6855 T6828 punct .,CF
R4612 T6857 T6858 expl There,were
R4613 T6859 T6860 det no,differences
R4614 T6860 T6858 attr differences,were
R4615 T6861 T6860 amod significant,differences
R4616 T6862 T6858 prep for,were
R4617 T6863 T6862 pobj any,for
R4618 T6864 T6863 prep of,any
R4619 T6865 T6866 det the,genes
R4620 T6866 T6864 pobj genes,of
R4621 T6867 T6866 nummod 6,genes
R4622 T6868 T6866 acl comparing,genes
R4623 T6869 T6868 punct : ,comparing
R4624 T6870 T6871 amod wild,type
R4625 T6871 T6872 compound type,mice
R4626 T6872 T6868 dobj mice,comparing
R4627 T6873 T6872 compound B6,mice
R4628 T6874 T6872 cc vs,mice
R4629 T6875 T6876 amod wild,type
R4630 T6876 T6877 nmod type,background
R4631 T6877 T6872 conj background,mice
R4632 T6878 T6877 amod mixed,background
R4633 T6879 T6872 punct ;,mice
R4634 T6880 T6872 cc or,mice
R4635 T6881 T6882 compound CF,mice
R4636 T6882 T6872 conj mice,mice
R4637 T6883 T6882 prep on,mice
R4638 T6884 T6885 det the,background
R4639 T6885 T6883 pobj background,on
R4640 T6886 T6885 amod mixed,background
R4641 T6887 T6882 cc vs,mice
R4642 T6888 T6889 amod wild,type
R4643 T6889 T6882 conj type,mice
R4644 T6890 T6889 prep on,type
R4645 T6891 T6892 det either,background
R4646 T6892 T6890 pobj background,on
R4647 T6893 T6858 punct .,were
R4648 T6895 T6896 expl There,were
R4649 T6897 T6898 quantmod 8,11
R4650 T6898 T6900 nummod 11,samples
R4651 T6899 T6898 punct –,11
R4652 T6900 T6896 attr samples,were
R4653 T6901 T6900 acl analyzed,samples
R4654 T6902 T6901 prep per,analyzed
R4655 T6903 T6902 pobj group,per
R4656 T6904 T6901 prep for,analyzed
R4657 T6905 T6906 det each,gene
R4658 T6906 T6904 pobj gene,for
R4659 T6907 T6896 punct .,were
R1665 T2528 T2529 advmod almost,20-fold
R1666 T2529 T2524 advmod 20-fold,overexpressed
R1667 T2530 T2524 prep in,overexpressed
R1668 T2531 T2532 compound B6,mice
R1669 T2532 T2530 pobj mice,in
R1670 T2533 T2532 compound CF,mice
R1671 T2534 T2524 prep compared,overexpressed
R1672 T2535 T2534 prep to,compared
R1673 T2536 T2537 amod wild,type
R1674 T2537 T2535 pobj type,to
R1675 T2538 T2524 punct ", ",overexpressed
R1676 T2539 T2524 cc and,overexpressed
R1677 T2540 T2541 prep on,was
R1678 T2541 T2524 conj was,overexpressed
R1679 T2542 T2543 det the,background
R1680 T2543 T2540 pobj background,on
R1681 T2544 T2543 amod mixed,background
R1682 T2545 T2546 det the,level
R1683 T2546 T2541 nsubj level,was
R1684 T2547 T2546 compound CF,level
R1685 T2548 T2546 compound expression,level
R1686 T2549 T2541 neg not,was
R1687 T2550 T2551 advmod statistically,different
R1688 T2551 T2541 acomp different,was
R1689 T2552 T2551 prep from,different
R1690 T2553 T2554 amod wild,type
R1691 T2554 T2552 pobj type,from
R1692 T2555 T2556 punct (,Fig.
R1693 T2556 T2541 parataxis Fig.,was
R1694 T2557 T2556 nummod 2F,Fig.
R1695 T2558 T2556 punct ),Fig.
R1696 T2559 T2541 punct .,was

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T1842 175-190 UBERON:0002108 denotes small intestine
T1843 228-235 SO_EXT:0000704 denotes genetic
T1845 270-282 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammatory
T1846 283-289 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T1847 290-295 SO_EXT:0000704 denotes genes
T1848 321-323 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T1849 348-352 SO_EXT:0000704 denotes gene
T1850 348-363 GO:0010467 denotes gene expression
T1851 365-375 GO:0010467 denotes Expression
T1852 393-398 SO_EXT:0000704 denotes genes
T1853 415-424 SO_EXT:wild_type_entity_or_quality denotes wild type
T1854 432-436 NCBITaxon:10088 denotes mice
T1855 454-461 SO_EXT:0000704 denotes genetic
T1856 475-484 CL:0000097 denotes Mast cell
T1857 475-495 PR_EXT:000010903 denotes Mast cell protease 2
T1858 480-484 CL_GO_EXT:cell denotes cell
T1859 485-493 GO_EXT:0008233 denotes protease
T1860 497-502 PR_EXT:000010903 denotes Mcpt2
T1861 509-515 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T1862 519-533 GO_PATO_RO_EXT:developmental_differentiation_process_or_quality denotes differentiated
T1863 534-544 CL:0000097 denotes mast cells
T1864 539-544 CL_GO_EXT:cell denotes cells
T1865 554-564 CL:0000097 denotes mast cells
T1866 559-564 CL_GO_EXT:cell denotes cells
T1867 596-601 NCBITaxon:10088 denotes mouse
T1868 602-611 UBERON:0000160 denotes intestine
T1869 613-620 CHEBI_SO_EXT:leucine denotes Leucine
T1870 613-641 PR_EXT:000009913 denotes Leucine-rich α2 glycoprotein
T1871 629-641 CHEBI:17089 denotes glycoprotein
T1872 643-647 PR_EXT:000009913 denotes Lrg1
T1873 660-666 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T1874 670-685 GO_RO_EXT:developmental_differentiation_process denotes differentiating
T1875 686-697 CL:0000775 denotes neutrophils
T1876 736-741 NCBITaxon:10088 denotes mouse
T1877 742-751 UBERON:0000160 denotes intestine
T1878 762-766 SO_EXT:0000704 denotes gene
T1879 784-791 CHEBI_SO_EXT:leucine denotes leucine
T1880 784-831 PR_EXT:000009913 denotes leucine-rich high endothelial cell glycoprotein
T1881 802-813 UBERON:0001986 denotes endothelial
T1882 802-818 CL:0000115 denotes endothelial cell
T1883 814-818 CL_GO_EXT:cell denotes cell
T1884 819-831 CHEBI:17089 denotes glycoprotein
T1885 833-837 PR_EXT:000009913 denotes Lrhg
T1886 866-872 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T1887 881-892 UBERON:0001986 denotes endothelial
T1888 893-900 UBERON:0001979 denotes venules
T1889 930-937 UBERON:0000479 denotes tissues
T1890 945-957 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammation
T1891 967-980 GO:0030097 denotes Hematopoietic
T1892 967-985 CL:0000988 denotes Hematopoietic cell
T1893 981-985 CL_GO_EXT:cell denotes cell
T1894 986-996 SO_EXT:0000673 denotes transcript
T1895 1018-1024 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T1896 1028-1033 UBERON:0000178 denotes blood
T1897 1028-1038 CL:0000081 denotes blood cell
T1898 1034-1038 CL_GO_EXT:cell denotes cell
T1899 1034-1052 GO:0008283 denotes cell proliferation
T1900 1061-1071 GO:0010467 denotes expression
T1901 1106-1111 NCBITaxon:10088 denotes mouse
T1902 1112-1127 UBERON:0002108 denotes small intestine
T1903 1129-1134 UBERON:0001977 denotes Serum
T1904 1129-1145 PR_EXT:000015919 denotes Serum amyloid A3
T1905 1135-1142 CHEBI:60425 denotes amyloid
T1906 1147-1151 PR_EXT:000015919 denotes SAA3
T1907 1165-1176 GO:0006953 denotes acute phase
T1908 1177-1181 SO_EXT:0000704 denotes gene
T1909 1190-1200 GO:0010467 denotes expression
T1910 1204-1210 GO_UBERON_EXT:villus denotes villus
T1911 1204-1221 UBERON:0013636 denotes villus epithelial
T1912 1211-1227 CL:0000066 denotes epithelial cells
T1913 1222-1227 CL_GO_EXT:cell denotes cells
T1914 1254-1263 UBERON:0000160 denotes intestine
T1915 1265-1299 PR_EXT:000015394 denotes Suppressor of cytokine signaling 3
T1916 1279-1287 GO_EXT:0005125 denotes cytokine
T1917 1279-1297 GO:0019221 denotes cytokine signaling
T1918 1301-1306 PR_EXT:000015394 denotes SOCS3
T1919 1325-1337 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammatory
T1920 1338-1342 SO_EXT:0000704 denotes gene
T1921 1367-1370 PR_EXT:000025748 denotes JAK
T1922 1367-1383 GO:0007259 denotes JAK-STAT pathway
T1923 1371-1375 PR_EXT:000001933 denotes STAT
T1924 1392-1402 GO:0010467 denotes expression
T1925 1429-1438 UBERON:0000160 denotes intestine
T1926 1440-1446 PR_EXT:000006534 denotes Muclin
T1927 1462-1467 PR_EXT:000006534 denotes dmbt1
T1928 1475-1485 GO:0010467 denotes expression
T1929 1489-1500 GO_EXT:positive_regulation denotes upregulated
T1930 1514-1523 UBERON:0000160 denotes intestine
T1931 1533-1537 CL_GO_EXT:cell denotes cell
T1932 1533-1545 GO:0009986 denotes cell surface
T1933 1546-1558 CHEBI:17089 denotes glycoprotein
T1934 1579-1589 UBERON:0000483 denotes epithelial
T1935 1601-1609 CHEBI:36357 denotes molecule
T1936 1653-1658 PR_EXT:000010903 denotes Mcpt2
T1937 1679-1683 NCBITaxon:10088 denotes mice
T1938 1732-1741 SO_EXT:wild_type_entity_or_quality denotes wild type
T1939 1808-1813 PR_EXT:000010903 denotes Mcpt2
T1940 1814-1824 GO:0010467 denotes expression
T1941 1840-1849 SO_EXT:wild_type_entity_or_quality denotes wild type
T1942 1885-1889 PR_EXT:000009913 denotes Lrg1
T1943 1890-1894 PR_EXT:000009913 denotes Lrhg
T1944 1895-1905 GO:0010467 denotes expression
T1945 1944-1948 NCBITaxon:10088 denotes mice
T1946 1982-1991 SO_EXT:wild_type_entity_or_quality denotes wild type
T1947 2048-2057 SO_EXT:wild_type_entity_or_quality denotes wild type
T1948 2093-2097 PR_EXT:000015919 denotes SAA3
T1949 2098-2102 CHEBI_SO_EXT:mRNA denotes mRNA
T1950 2138-2142 NCBITaxon:10088 denotes mice
T1951 2213-2222 SO_EXT:wild_type_entity_or_quality denotes wild type
T1952 2258-2263 PR_EXT:000015394 denotes SOCS3
T1953 2301-2305 NCBITaxon:10088 denotes mice
T1954 2339-2348 SO_EXT:wild_type_entity_or_quality denotes wild type
T1955 2409-2418 SO_EXT:wild_type_entity_or_quality denotes wild type
T1956 2470-2476 PR_EXT:000006534 denotes Muclin
T1957 2484-2493 GO:0010467 denotes expressed
T1958 2518-2527 UBERON:0000160 denotes intestine
T1959 2582-2592 GO:0010467 denotes expression
T1960 2605-2609 NCBITaxon:10088 denotes mice
T1961 2647-2656 SO_EXT:wild_type_entity_or_quality denotes wild type
T1962 2691-2700 GO:0010467 denotes expressed
T1963 2725-2729 NCBITaxon:10088 denotes mice
T1964 2742-2751 SO_EXT:wild_type_entity_or_quality denotes wild type
T1965 2788-2798 GO:0010467 denotes expression
T1966 2842-2851 SO_EXT:wild_type_entity_or_quality denotes wild type
T1967 3625-3629 UBERON_EXT:body denotes body
T1968 3642-3646 SO_EXT:0000704 denotes gene
T1969 3642-3657 GO:0010467 denotes gene expression
T1970 3735-3742 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females
T1971 3747-3752 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes males
T1972 3781-3788 NCBITaxon:33208 denotes animals
T1973 3821-3831 GO:0071514 denotes imprinting
T6728 2883-2890 SO_EXT:0000704 denotes genetic
T6729 2905-2917 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammatory
T6730 2918-2922 SO_EXT:0000704 denotes gene
T6731 2918-2933 GO:0010467 denotes gene expression
T6732 2940-2945 NCBITaxon:10088 denotes mouse
T6733 2946-2961 UBERON:0002108 denotes small intestine
T6734 2963-2966 CHEBI_SO_EXT:RNA denotes RNA
T6735 2967-2977 GO:0010467 denotes expression
T6736 3027-3029 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T6737 3040-3044 SO_EXT:0000704 denotes gene
T6738 3054-3061 SO_EXT:0000112 denotes primers
T6739 3094-3099 GO_PR_EXT:glyceraldehyde_3_phosphate_dehydrogenase denotes GAPDH
T6740 3100-3104 CHEBI_SO_EXT:mRNA denotes mRNA
T6741 3134-3143 SO_EXT:wild_type_entity_or_quality denotes wild type
T6742 3151-3155 NCBITaxon:10088 denotes mice
T6743 3189-3198 SO_EXT:wild_type_entity_or_quality denotes wild type
T6744 3394-3399 SO_EXT:0000704 denotes genes
T6745 3411-3420 SO_EXT:wild_type_entity_or_quality denotes wild type
T6746 3424-3428 NCBITaxon:10088 denotes mice
T6747 3432-3441 SO_EXT:wild_type_entity_or_quality denotes wild type
T6748 3466-3470 NCBITaxon:10088 denotes mice
T6749 3498-3507 SO_EXT:wild_type_entity_or_quality denotes wild type
T6750 3582-3586 SO_EXT:0000704 denotes gene
T1836 3-7 NCBITaxon:10088 denotes mice
T1837 45-55 GO:0010467 denotes expression
T1838 59-71 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammatory
T1839 72-79 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes markers
T1840 109-113 NCBITaxon:10088 denotes mice
T1841 155-167 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammation
T1844 256-266 GO:0010467 denotes expression

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T1824 2470-2476 PR:000006534 denotes Muclin
T1741 3-7 NCBITaxon:10088 denotes mice
T1742 45-55 GO:0010467 denotes expression
T1743 109-113 NCBITaxon:10088 denotes mice
T1744 175-190 UBERON:0002108 denotes small intestine
T1745 228-235 SO:0000704 denotes genetic
T1746 256-266 GO:0010467 denotes expression
T1747 290-295 SO:0000704 denotes genes
T1748 348-352 SO:0000704 denotes gene
T1749 348-363 GO:0010467 denotes gene expression
T1750 365-375 GO:0010467 denotes Expression
T1751 393-398 SO:0000704 denotes genes
T1752 432-436 NCBITaxon:10088 denotes mice
T1753 454-461 SO:0000704 denotes genetic
T1754 475-484 CL:0000097 denotes Mast cell
T1755 475-495 PR:000010903 denotes Mast cell protease 2
T1756 497-502 PR:000010903 denotes Mcpt2
T1757 534-544 CL:0000097 denotes mast cells
T1758 554-564 CL:0000097 denotes mast cells
T1759 596-601 NCBITaxon:10088 denotes mouse
T1760 602-611 UBERON:0000160 denotes intestine
T1761 613-641 PR:000009913 denotes Leucine-rich α2 glycoprotein
T1762 629-641 CHEBI:17089 denotes glycoprotein
T1763 643-647 PR:000009913 denotes Lrg1
T1764 686-697 CL:0000775 denotes neutrophils
T1765 736-741 NCBITaxon:10088 denotes mouse
T1766 742-751 UBERON:0000160 denotes intestine
T1767 762-766 SO:0000704 denotes gene
T1768 784-831 PR:000009913 denotes leucine-rich high endothelial cell glycoprotein
T1769 802-813 UBERON:0001986 denotes endothelial
T1770 802-818 CL:0000115 denotes endothelial cell
T1771 819-831 CHEBI:17089 denotes glycoprotein
T1772 833-837 PR:000009913 denotes Lrhg
T1773 881-892 UBERON:0001986 denotes endothelial
T1774 893-900 UBERON:0001979 denotes venules
T1775 930-937 UBERON:0000479 denotes tissues
T1776 967-980 GO:0030097 denotes Hematopoietic
T1777 967-985 CL:0000988 denotes Hematopoietic cell
T1778 986-996 SO:0000673 denotes transcript
T1779 1028-1033 UBERON:0000178 denotes blood
T1780 1028-1038 CL:0000081 denotes blood cell
T1781 1034-1052 GO:0008283 denotes cell proliferation
T1782 1061-1071 GO:0010467 denotes expression
T1783 1106-1111 NCBITaxon:10088 denotes mouse
T1784 1112-1127 UBERON:0002108 denotes small intestine
T1785 1129-1134 UBERON:0001977 denotes Serum
T1786 1129-1145 PR:000015919 denotes Serum amyloid A3
T1787 1135-1142 CHEBI:60425 denotes amyloid
T1788 1147-1151 PR:000015919 denotes SAA3
T1789 1165-1176 GO:0006953 denotes acute phase
T1790 1177-1181 SO:0000704 denotes gene
T1791 1190-1200 GO:0010467 denotes expression
T1792 1204-1221 UBERON:0013636 denotes villus epithelial
T1793 1211-1227 CL:0000066 denotes epithelial cells
T1794 1254-1263 UBERON:0000160 denotes intestine
T1795 1265-1299 PR:000015394 denotes Suppressor of cytokine signaling 3
T1796 1279-1297 GO:0019221 denotes cytokine signaling
T1797 1301-1306 PR:000015394 denotes SOCS3
T1798 1338-1342 SO:0000704 denotes gene
T1799 1367-1370 PR:000025748 denotes JAK
T1800 1367-1383 GO:0007259 denotes JAK-STAT pathway
T1801 1371-1375 PR:000001933 denotes STAT
T1802 1392-1402 GO:0010467 denotes expression
T1803 1429-1438 UBERON:0000160 denotes intestine
T1804 1440-1446 PR:000006534 denotes Muclin
T1805 1462-1467 PR:000006534 denotes dmbt1
T1806 1475-1485 GO:0010467 denotes expression
T1807 1514-1523 UBERON:0000160 denotes intestine
T1808 1533-1545 GO:0009986 denotes cell surface
T1809 1546-1558 CHEBI:17089 denotes glycoprotein
T1810 1579-1589 UBERON:0000483 denotes epithelial
T1811 1601-1609 CHEBI:36357 denotes molecule
T1812 1653-1658 PR:000010903 denotes Mcpt2
T1813 1679-1683 NCBITaxon:10088 denotes mice
T1814 1808-1813 PR:000010903 denotes Mcpt2
T1815 1814-1824 GO:0010467 denotes expression
T1816 1885-1889 PR:000009913 denotes Lrg1
T1817 1890-1894 PR:000009913 denotes Lrhg
T1818 1895-1905 GO:0010467 denotes expression
T1819 1944-1948 NCBITaxon:10088 denotes mice
T1820 2093-2097 PR:000015919 denotes SAA3
T1821 2138-2142 NCBITaxon:10088 denotes mice
T1822 2258-2263 PR:000015394 denotes SOCS3
T1823 2301-2305 NCBITaxon:10088 denotes mice
T1825 2484-2493 GO:0010467 denotes expressed
T1826 2518-2527 UBERON:0000160 denotes intestine
T1827 2582-2592 GO:0010467 denotes expression
T1828 2605-2609 NCBITaxon:10088 denotes mice
T1829 2691-2700 GO:0010467 denotes expressed
T1830 2725-2729 NCBITaxon:10088 denotes mice
T1831 2788-2798 GO:0010467 denotes expression
T1832 3642-3646 SO:0000704 denotes gene
T1833 3642-3657 GO:0010467 denotes gene expression
T1834 3781-3788 NCBITaxon:33208 denotes animals
T1835 3821-3831 GO:0071514 denotes imprinting
T6715 2883-2890 SO:0000704 denotes genetic
T6716 2918-2922 SO:0000704 denotes gene
T6717 2918-2933 GO:0010467 denotes gene expression
T6718 2940-2945 NCBITaxon:10088 denotes mouse
T6719 2946-2961 UBERON:0002108 denotes small intestine
T6720 2967-2977 GO:0010467 denotes expression
T6721 3040-3044 SO:0000704 denotes gene
T6722 3054-3061 SO:0000112 denotes primers
T6723 3151-3155 NCBITaxon:10088 denotes mice
T6724 3394-3399 SO:0000704 denotes genes
T6725 3424-3428 NCBITaxon:10088 denotes mice
T6726 3466-3470 NCBITaxon:10088 denotes mice
T6727 3582-3586 SO:0000704 denotes gene