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PMC:116589 / 5268-5481 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1611 0-213 sentence denotes The sequence of DsRed1 has recently been modified and optimized for high levels of expression in mammalian cells by the introduction of 144 silent base pair changes corresponding to human codon usage preferences.
T1612 1-4 DT denotes The
T1613 5-13 NN denotes sequence
T1614 42-50 VBN denotes modified
T1615 14-16 IN denotes of
T1616 17-23 NN denotes DsRed1
T1617 24-27 VBZ denotes has
T1618 28-36 RB denotes recently
T1619 37-41 VBN denotes been
T1620 51-54 CC denotes and
T1621 55-64 VBN denotes optimized
T1622 65-68 IN denotes for
T1623 69-73 JJ denotes high
T1624 74-80 NNS denotes levels
T1625 81-83 IN denotes of
T1626 84-94 NN denotes expression
T1627 95-97 IN denotes in
T1628 98-107 JJ denotes mammalian
T1629 108-113 NNS denotes cells
T1630 114-116 IN denotes by
T1631 117-120 DT denotes the
T1632 121-133 NN denotes introduction
T1633 134-136 IN denotes of
T1634 137-140 CD denotes 144
T1635 158-165 NNS denotes changes
T1636 141-147 JJ denotes silent
T1637 153-157 NN denotes pair
T1638 148-152 NN denotes base
T1639 166-179 VBG denotes corresponding
T1640 180-182 IN denotes to
T1641 183-188 JJ denotes human
T1642 189-194 NN denotes codon
T1643 195-200 NN denotes usage
T1644 201-212 NNS denotes preferences
T1645 212-213 . denotes .
R906 T1612 T1613 det The,sequence
R907 T1613 T1614 nsubjpass sequence,modified
R908 T1615 T1613 prep of,sequence
R909 T1616 T1615 pobj DsRed1,of
R910 T1617 T1614 aux has,modified
R911 T1618 T1614 advmod recently,modified
R912 T1619 T1614 auxpass been,modified
R913 T1620 T1614 cc and,modified
R914 T1621 T1614 conj optimized,modified
R915 T1622 T1621 prep for,optimized
R916 T1623 T1624 amod high,levels
R917 T1624 T1622 pobj levels,for
R918 T1625 T1624 prep of,levels
R919 T1626 T1625 pobj expression,of
R920 T1627 T1624 prep in,levels
R921 T1628 T1629 amod mammalian,cells
R922 T1629 T1627 pobj cells,in
R923 T1630 T1621 prep by,optimized
R924 T1631 T1632 det the,introduction
R925 T1632 T1630 pobj introduction,by
R926 T1633 T1632 prep of,introduction
R927 T1634 T1635 nummod 144,changes
R928 T1635 T1633 pobj changes,of
R929 T1636 T1637 amod silent,pair
R930 T1637 T1635 compound pair,changes
R931 T1638 T1637 compound base,pair
R932 T1639 T1635 acl corresponding,changes
R933 T1640 T1639 prep to,corresponding
R934 T1641 T1642 amod human,codon
R935 T1642 T1643 compound codon,usage
R936 T1643 T1644 compound usage,preferences
R937 T1644 T1640 pobj preferences,to
R938 T1645 T1614 punct .,modified

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1254 5-13 SO_EXT:biological_sequence denotes sequence
T1255 42-50 SO_EXT:sequence_alteration_process denotes modified
T1256 84-94 GO:0010467 denotes expression
T1257 98-107 NCBITaxon:40674 denotes mammalian
T1258 108-113 CL_GO_EXT:cell denotes cells
T1259 148-152 CHEBI_SO_EXT:base denotes base
T1260 148-157 SO_EXT:0000028 denotes base pair
T1261 158-165 SO_EXT:sequence_alteration_entity_or_process denotes changes
T1262 183-188 NCBITaxon:9606 denotes human
T1263 189-194 SO_EXT:0000360 denotes codon

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1136 84-94 GO:0010467 denotes expression
T1137 98-107 NCBITaxon:40674 denotes mammalian
T1138 148-157 SO:0000028 denotes base pair
T1139 183-188 NCBITaxon:9606 denotes human
T1140 189-194 SO:0000360 denotes codon