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PMC:116589 / 138-799 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T177 0-10 sentence denotes Background
T178 0-10 NN denotes Background
T179 10-122 sentence denotes Non-invasive autofluorescent reporters have revolutionized lineage labeling in an array of different organisms.
T180 11-23 JJ denotes Non-invasive
T181 40-49 NNS denotes reporters
T182 24-39 JJ denotes autofluorescent
T183 55-69 VBN denotes revolutionized
T184 50-54 VBP denotes have
T185 70-77 NN denotes lineage
T186 78-86 NN denotes labeling
T187 87-89 IN denotes in
T188 90-92 DT denotes an
T189 93-98 NN denotes array
T190 99-101 IN denotes of
T191 102-111 JJ denotes different
T192 112-121 NNS denotes organisms
T193 121-122 . denotes .
T194 122-296 sentence denotes In recent years green fluorescent protein (GFP) from the bioluminescent jellyfish Aequoria Victoria has gained popularity in mouse transgenic and gene targeting regimes [1].
T195 123-125 IN denotes In
T196 227-233 VBN denotes gained
T197 126-132 JJ denotes recent
T198 133-138 NNS denotes years
T199 139-144 JJ denotes green
T200 157-164 NN denotes protein
T201 145-156 JJ denotes fluorescent
T202 165-166 -LRB- denotes (
T203 166-169 NN denotes GFP
T204 169-170 -RRB- denotes )
T205 171-175 IN denotes from
T206 176-179 DT denotes the
T207 195-204 NN denotes jellyfish
T208 180-194 JJ denotes bioluminescent
T209 205-213 NNP denotes Aequoria
T210 214-222 NNP denotes Victoria
T211 223-226 VBZ denotes has
T212 234-244 NN denotes popularity
T213 245-247 IN denotes in
T214 248-253 NN denotes mouse
T215 254-264 JJ denotes transgenic
T216 284-291 NNS denotes regimes
T217 265-268 CC denotes and
T218 269-273 NN denotes gene
T219 274-283 VBG denotes targeting
T220 292-293 -LRB- denotes [
T221 293-294 CD denotes 1
T222 294-295 -RRB- denotes ]
T223 295-296 . denotes .
T224 296-500 sentence denotes It offers several advantages over conventional gene-based reporters, such as lacZ and alkaline phosphatase, in that its visualization does not require a chromogenic substrate and can be realized in vivo.
T225 297-299 PRP denotes It
T226 300-306 VBZ denotes offers
T227 307-314 JJ denotes several
T228 315-325 NNS denotes advantages
T229 326-330 IN denotes over
T230 331-343 JJ denotes conventional
T231 355-364 NNS denotes reporters
T232 344-348 NN denotes gene
T233 349-354 VBN denotes based
T234 348-349 HYPH denotes -
T235 364-366 , denotes ,
T236 366-370 JJ denotes such
T237 371-373 IN denotes as
T238 374-378 NN denotes lacZ
T239 379-382 CC denotes and
T240 383-391 NN denotes alkaline
T241 392-403 NN denotes phosphatase
T242 403-405 , denotes ,
T243 405-407 IN denotes in
T244 440-447 VB denotes require
T245 408-412 IN denotes that
T246 413-416 PRP$ denotes its
T247 417-430 NN denotes visualization
T248 431-435 VBZ denotes does
T249 436-439 RB denotes not
T250 448-449 DT denotes a
T251 462-471 NN denotes substrate
T252 450-461 JJ denotes chromogenic
T253 472-475 CC denotes and
T254 476-479 MD denotes can
T255 483-491 VBN denotes realized
T256 480-482 VB denotes be
T257 492-494 FW denotes in
T258 495-499 FW denotes vivo
T259 499-500 . denotes .
T260 500-661 sentence denotes We have previously demonstrated the utility and developmental neutrality of enhanced green fluorescent protein (EGFP) in embryonic stem (ES) cells and mice [2].
T261 501-503 PRP denotes We
T262 520-532 VBN denotes demonstrated
T263 504-508 VBP denotes have
T264 509-519 RB denotes previously
T265 533-536 DT denotes the
T266 537-544 NN denotes utility
T267 545-548 CC denotes and
T268 549-562 JJ denotes developmental
T269 563-573 NN denotes neutrality
T270 574-576 IN denotes of
T271 577-585 VBN denotes enhanced
T272 604-611 NN denotes protein
T273 586-591 JJ denotes green
T274 592-603 JJ denotes fluorescent
T275 612-613 -LRB- denotes (
T276 613-617 NN denotes EGFP
T277 617-618 -RRB- denotes )
T278 619-621 IN denotes in
T279 622-631 JJ denotes embryonic
T280 632-636 NN denotes stem
T281 642-647 NNS denotes cells
T282 637-638 -LRB- denotes (
T283 638-640 NN denotes ES
T284 640-641 -RRB- denotes )
T285 648-651 CC denotes and
T286 652-656 NNS denotes mice
T287 657-658 -LRB- denotes [
T288 658-659 CD denotes 2
T289 659-660 -RRB- denotes ]
T290 660-661 . denotes .
R25 T180 T181 amod Non-invasive,reporters
R26 T181 T183 nsubj reporters,revolutionized
R27 T182 T181 amod autofluorescent,reporters
R28 T184 T183 aux have,revolutionized
R29 T185 T186 compound lineage,labeling
R30 T186 T183 dobj labeling,revolutionized
R31 T187 T183 prep in,revolutionized
R32 T188 T189 det an,array
R33 T189 T187 pobj array,in
R34 T190 T189 prep of,array
R35 T191 T192 amod different,organisms
R36 T192 T190 pobj organisms,of
R37 T193 T183 punct .,revolutionized
R38 T195 T196 prep In,gained
R39 T197 T198 amod recent,years
R40 T198 T195 pobj years,In
R41 T199 T200 amod green,protein
R42 T200 T196 nsubj protein,gained
R43 T201 T200 amod fluorescent,protein
R44 T202 T200 punct (,protein
R45 T203 T200 appos GFP,protein
R46 T204 T200 punct ),protein
R47 T205 T200 prep from,protein
R48 T206 T207 det the,jellyfish
R49 T207 T205 pobj jellyfish,from
R50 T208 T207 amod bioluminescent,jellyfish
R51 T209 T210 compound Aequoria,Victoria
R52 T210 T207 appos Victoria,jellyfish
R53 T211 T196 aux has,gained
R54 T212 T196 dobj popularity,gained
R55 T213 T196 prep in,gained
R56 T214 T215 npadvmod mouse,transgenic
R57 T215 T216 amod transgenic,regimes
R58 T216 T213 pobj regimes,in
R59 T217 T215 cc and,transgenic
R60 T218 T219 npadvmod gene,targeting
R61 T219 T215 conj targeting,transgenic
R62 T220 T221 punct [,1
R63 T221 T196 parataxis 1,gained
R64 T222 T221 punct ],1
R65 T223 T196 punct .,gained
R66 T225 T226 nsubj It,offers
R67 T227 T228 amod several,advantages
R68 T228 T226 dobj advantages,offers
R69 T229 T228 prep over,advantages
R70 T230 T231 amod conventional,reporters
R71 T231 T229 pobj reporters,over
R72 T232 T233 npadvmod gene,based
R73 T233 T231 amod based,reporters
R74 T234 T233 punct -,based
R75 T235 T228 punct ", ",advantages
R76 T236 T237 amod such,as
R77 T237 T228 prep as,advantages
R78 T238 T237 pobj lacZ,as
R79 T239 T238 cc and,lacZ
R80 T240 T241 compound alkaline,phosphatase
R81 T241 T238 conj phosphatase,lacZ
R82 T242 T226 punct ", ",offers
R83 T243 T244 mark in,require
R84 T244 T226 advcl require,offers
R85 T245 T244 mark that,require
R86 T246 T247 poss its,visualization
R87 T247 T244 nsubj visualization,require
R88 T248 T244 aux does,require
R89 T249 T244 neg not,require
R90 T250 T251 det a,substrate
R91 T251 T244 dobj substrate,require
R92 T252 T251 amod chromogenic,substrate
R93 T253 T244 cc and,require
R94 T254 T255 aux can,realized
R95 T255 T244 conj realized,require
R96 T256 T255 auxpass be,realized
R97 T257 T258 advmod in,vivo
R98 T258 T255 advmod vivo,realized
R99 T259 T226 punct .,offers
R100 T261 T262 nsubj We,demonstrated
R101 T263 T262 aux have,demonstrated
R102 T264 T262 advmod previously,demonstrated
R103 T265 T266 det the,utility
R104 T266 T262 dobj utility,demonstrated
R105 T267 T266 cc and,utility
R106 T268 T269 amod developmental,neutrality
R107 T269 T266 conj neutrality,utility
R108 T270 T266 prep of,utility
R109 T271 T272 amod enhanced,protein
R110 T272 T270 pobj protein,of
R111 T273 T272 amod green,protein
R112 T274 T272 amod fluorescent,protein
R113 T275 T272 punct (,protein
R114 T276 T272 appos EGFP,protein
R115 T277 T266 punct ),utility
R116 T278 T266 prep in,utility
R117 T279 T280 amod embryonic,stem
R118 T280 T281 nmod stem,cells
R119 T281 T278 pobj cells,in
R120 T282 T280 punct (,stem
R121 T283 T280 appos ES,stem
R122 T284 T281 punct ),cells
R123 T285 T281 cc and,cells
R124 T286 T281 conj mice,cells
R125 T287 T288 punct [,2
R126 T288 T262 parataxis 2,demonstrated
R127 T289 T288 punct ],2
R128 T290 T262 punct .,demonstrated

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T97 78-86 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeling
T98 112-121 NCBITaxon:1 denotes organisms
T99 157-164 CHEBI_PR_EXT:protein denotes protein
T100 180-194 GO:0008218 denotes bioluminescent
T101 195-204 NCBITaxon:6142 denotes jellyfish
T102 205-222 NCBITaxon:6100 denotes Aequoria Victoria
T103 248-253 NCBITaxon:10088 denotes mouse
T104 254-264 SO_EXT:transgenic_entity denotes transgenic
T105 269-273 SO_EXT:0000704 denotes gene
T106 344-348 SO_EXT:0000704 denotes gene
T107 374-378 PR_EXT:000033987 denotes lacZ
T108 383-403 GO_PR_EXT:alkaline_phosphatase denotes alkaline phosphatase
T109 450-461 CHEBI_EXT:75050 denotes chromogenic
T110 604-611 CHEBI_PR_EXT:protein denotes protein
T111 622-631 UBERON:0000922 denotes embryonic
T112 622-636 _FRAGMENT denotes embryonic stem
T113 642-647 CL:0002322 denotes cells
T114 638-640 _FRAGMENT denotes ES
T115 642-647 CL_GO_EXT:cell denotes cells
T116 652-656 NCBITaxon:10088 denotes mice
R5 T113 T112 _lexicallyChainedTo cells,embryonic stem
R6 T113 T114 _lexicallyChainedTo cells,ES

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T57 112-121 NCBITaxon:1 denotes organisms
T58 180-194 GO:0008218 denotes bioluminescent
T59 195-204 NCBITaxon:6142 denotes jellyfish
T60 205-222 NCBITaxon:6100 denotes Aequoria Victoria
T61 248-253 NCBITaxon:10088 denotes mouse
T62 269-273 SO:0000704 denotes gene
T63 344-348 SO:0000704 denotes gene
T64 374-378 PR:000033987 denotes lacZ
T65 450-461 CHEBI:75050 denotes chromogenic
T66 622-631 UBERON:0000922 denotes embryonic
T67 622-636 _FRAGMENT denotes embryonic stem
T68 642-647 CL:0002322 denotes cells
T69 638-640 _FRAGMENT denotes ES
T70 652-656 NCBITaxon:10088 denotes mice
R1 T68 T67 _lexicallyChainedTo cells,embryonic stem
R2 T68 T69 _lexicallyChainedTo cells,ES